Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01691 and RBAM_010150
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_01691___yhaO.1.9828.seq
# -bsequence dna-align/RBAM_010150___yhaO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01691___yhaO-RBAM_010150___yhaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01691___yhaO-RBAM_010150___yhaO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01691___yhaO
# 2: RBAM_010150___yhaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1302
# Identity: 874/1302 (67.1%)
# Similarity: 874/1302 (67.1%)
# Gaps: 153/1302 (11.8%)
# Score: 2824.5
#
#
#=======================================
BSNT_01691___ 1 ATGTTGACTGATCTAACCTTTATTCATGCGGCAGATCTTCATCTTGACAG 50
.||.|||||||.||.|||||||||||.||.||.||.|||||.|||||
RBAM_010150__ 1 ---ATGGCTGATCTGACGTTTATTCATGCCGCTGACCTGCATCTGGACAG 47
BSNT_01691___ 51 CCCGTTTTACGGGATATCGCATCTGCCGGAGCCGATTTTTGCCCGGATTA 100
||||||||||||.||.|||.|||||||.||.|||.|.|.|||.||.||||
RBAM_010150__ 48 CCCGTTTTACGGCATTTCGAATCTGCCTGAACCGGTATATGCGCGTATTA 97
BSNT_01691___ 101 AAGAAAGCACGTTTGCA-AGCGTGAGACATATGATAGACGCCGCAGTGAG 149
||||||||||.||| || |||||..|.|...|||..||||..|||.|..|
RBAM_010150__ 98 AAGAAAGCACATTT-CACAGCGTCCGCCGACTGACGGACGGGGCACTCCG 146
BSNT_01691___ 150 AGAGCACGTTGATTTCATTTTGCTGGCGGGAGATCTGTTTGATGAAGCCA 199
.|||||.|..||||||.|..||||..||||.|||||||||||.|||||||
RBAM_010150__ 147 GGAGCAGGCAGATTTCGTGCTGCTTTCGGGGGATCTGTTTGACGAAGCCA 196
BSNT_01691___ 200 ATCGAAGCTTAAAGGCTCAGCTCTTTTTGAAAAAACAGTTTGAAAGACT- 248
|..||||.|||||.||.|||||.|||||||.||||||||||...|||.|
RBAM_010150__ 197 ACAGAAGTTTAAAAGCCCAGCTGTTTTTGAGAAAACAGTTTACGAGATTA 246
BSNT_01691___ 249 CAGAGAGTGCGGGATTTC--GGTATACGTCATCTTTGGGAATCACGATCA 296
|||..|| .||||.|| .||.|.||||||.||.||.||.||.|||||
RBAM_010150__ 247 CAGGAAG---CGGATATCCAAGTGTTCGTCATATTCGGCAACCATGATCA 293
BSNT_01691___ 297 TCTTGGCGGGGAGTGGACGCCGATTGAATGGCCTGAGAATGTCCATATTT 346
|.|.|||||..||||||||||||||||||||||.||.|||||.|||||.|
RBAM_010150__ 294 TTTGGGCGGTAAGTGGACGCCGATTGAATGGCCGGAAAATGTACATATCT 343
BSNT_01691___ 347 TTTCGTCCGCTGTTCCAGAAGAAAAATCGTTTTTTAAAGAAGGCAG---- 392
|..|.||.|.|...||.||.||||||||.||.|||||| ||.|.||
RBAM_010150__ 344 TCACCTCGGATACACCGGAGGAAAAATCTTTCTTTAAA-AACGGAGAGCT 392
BSNT_01691___ 393 -GCGCATAGCAAGCATTTACGGCTTCAGCTATCAAGCAAG-AGCAGTGAC 440
||| ||||||||.|||||.|.|||||||||.|.||| ||| ||.||
RBAM_010150__ 393 TGCG----GCAAGCATATACGGATGCAGCTATCAGGAAAGAAGC-GTAAC 437
BSNT_01691___ 441 GGAAAACCAAGCCGCCCGCTATCGGAGATCAACTGA----CGCACCGTTT 486
||..||.||.||.|||||.||.|||| ||.||| |||.||.|.|
RBAM_010150__ 438 GGTCAATCAGGCGGCCCGTTACCGGA----AAATGACCGGCGCGCCTTAT 483
BSNT_01691___ 487 CATATCGGCATGCTCCACGGCACGCTGTCAGGATCTGAAGGACACGATCC 536
||||||||||||||||||||||.|.|.||||||.|.|||||.||.||.||
RBAM_010150__ 484 CATATCGGCATGCTCCACGGCATGTTATCAGGAGCGGAAGGGCATGACCC 533
BSNT_01691___ 537 GTATTGCCCGTTTACACATGACGACCTCGTGAAAAGCGGGATGGATTATT 586
|||.|||||||||||..|.||.|||||.|..||||||||.||||||||.|
RBAM_010150__ 534 GTACTGCCCGTTTACGAAAGAAGACCTTGAAAAAAGCGGCATGGATTACT 583
BSNT_01691___ 587 GGGCGCTTGGCCATATACATAAACGCCAGGTTCTATCTGCCGAGCATCCG 636
|||||||.||.||.||.||||||||.||||||||.||.|||.|||||||.
RBAM_010150__ 584 GGGCGCTCGGACACATTCATAAACGGCAGGTTCTGTCCGCCCAGCATCCC 633
BSNT_01691___ 637 GCAGTCATTTACCCGGGAAACACGCAAGCACGCCATATAAAGGAGACGGG 686
||.|.|||||||||.||.||.|..|||||.||.|||.||||.||.||.||
RBAM_010150__ 634 GCCGCCATTTACCCCGGGAATATTCAAGCCCGGCATTTAAAAGAAACCGG 683
BSNT_01691___ 687 AGATAAAGGTTATTATCTCGTTCATGTGACAAACGGAGATATATCTTATG 736
...|||.||||||||||||||.|..|.|.|||||||.||.||.||||..|
RBAM_010150__ 684 GCCTAAGGGTTATTATCTCGTCCGGGCGGCAAACGGTGAGATGTCTTGGG 733
BSNT_01691___ 737 AATTTCAGAG-AGCGCATGATGTCCTGTGGGA--AAAAGCGGCGGTTGAT 783
|| ||||.|| ||||||||||||..|.||||| ||| |||||
RBAM_010150__ 734 AA-TTCAAAGAAGCGCATGATGTGTTATGGGAGGAAA--------TTGAT 774
BSNT_01691___ 784 GTG-------ACGGAGGCAAAGAATATGACAGCCCTCTTCCAAATGGTGG 826
.|| .|||| ||..|..||||||| ..|.||||..||.|..|.
RBAM_010150__ 775 CTGGATATCTCCGGA-GCTGAACATATGAC--TTCACTTCTGAAAGCCGC 821
BSNT_01691___ 827 A--GGACACGTT-TTCGAAGCT-----GCGGAAAAAGGGGAGCCCTGTTT 868
| |||.||.|| |.|| ||| |||| .|||..||||.|..|
RBAM_010150__ 822 ATCGGATACATTCTCCG--GCTTGCGCGCGG----CGGGCCGCCCGGCAT 865
BSNT_01691___ 869 GTGTAAGGCTTGTTTTACAAGGGACGGCGCCGGAATGGCTGCT------- 911
||||.|||||.||..|.|..||..||||||| |.|||
RBAM_010150__ 866 GTGTCAGGCTGGTGCTTCGCGGCGCGGCGCC-------CCGCTTTTGGAC 908
BSNT_01691___ 912 GGAGGCGCCAAAAGGCACCTTGGATGAGTTTCTTGAAGCTCTTCAGGAAC 961
|||||||||...|||.|.|..|||.|||.|||||...|||.|.|||||..
RBAM_010150__ 909 GGAGGCGCCCGCAGGTATCGCGGAGGAGCTTCTTTCCGCTTTACAGGAGG 958
BSNT_01691___ 962 AAGAAGCGGAAGAGGAACATTTCGTTTGGCCTCTT--------AGATTGG 1003
||||.||.|||||||||..||||||.|||||.||| .|||.||
RBAM_010150__ 959 AAGAGGCCGAAGAGGAATGTTTCGTCTGGCCGCTTGCGCTTGAGGATCGG 1008
BSNT_01691___ 1004 AC-GATGAGACAGAAAACGAAGCAAACCTAACAAACCTTGATCCTTTTTT 1052
|| |||||.|||||.|.|| .||...|| |||||.|||||
RBAM_010150__ 1009 ACGGATGAAACAGACACCG-TGCCGCCC-----------GATCCGTTTTT 1046
BSNT_01691___ 1053 ----TGGCGGTTTATTTGAAGACATTGATCGCAGCGATCTGTCAGAC--- 1095
.||| |..||.|.|||||.||.|...||| |||||
RBAM_010150__ 1047 AAAAGGGC----TCCTTCAGGACATAGAACAATGCG------CAGACATG 1086
BSNT_01691___ 1096 ------GTGCTGGAAGGGCTTGAGCGGCATCCAGTGTA-------TAGAA 1132
||..|.||||..||||||||.|||||.||.|| .|||.
RBAM_010150__ 1087 AGCGGTGTATTTGAAGCCCTTGAGCGTCATCCCGTATACCGGCGTCAGAT 1136
BSNT_01691___ 1133 GG---CACGCGGACCGGTTTAGCCAAGAGGAGGTAAAGGAAATAAAAGAG 1179
|| || ||||...|.||.|||.||..|||.||.||...|
RBAM_010150__ 1137 GGCTTCA----------TTTACAGATGAAGAGATACTGGATATTAAGCGG 1176
BSNT_01691___ 1180 CAGGCACA----GATATTATTGAAAAGACAGCTTAAGGTGCTTGATACAT 1225
|||||.|| | |.||.|.|.|.|||.|.||||.||||.|.|.||
RBAM_010150__ 1177 CAGGCTCAAGCCG----TTTTAAGACGCCAGATGAAGGAGCTTCAGAGAT 1222
BSNT_01691___ 1226 GA 1227
||
RBAM_010150__ 1223 GA 1224
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