Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01690 and RBAM_010140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_01690___yhaP.1.9828.seq
# -bsequence dna-align/RBAM_010140___yhaP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01690___yhaP-RBAM_010140___yhaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01690___yhaP-RBAM_010140___yhaP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01690___yhaP
# 2: RBAM_010140___yhaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity: 951/1305 (72.9%)
# Similarity: 951/1305 (72.9%)
# Gaps: 90/1305 ( 6.9%)
# Score: 3340.5
#
#
#=======================================
BSNT_01690___ 1 ATGAATAAATTTTGGATCATGCTTTCTCATACATACAAAAATAAGATTAT 50
|||||||||||||||||.|||||.|.|||||||||.|||||.||.||...
RBAM_010140__ 1 ATGAATAAATTTTGGATTATGCTGTTTCATACATATAAAAACAAAATCGC 50
BSNT_01690___ 51 GGCAAAATCCTTTATTATTTCGACTGTCATCACGGTGCTGCTTGTTTTAG 100
|.||||.||.||.|||||||||||.|.|||.||.||..|..|.||.||||
RBAM_010140__ 51 GACAAAGTCATTCATTATTTCGACCGCCATTACCGTTTTATTAGTATTAG 100
BSNT_01690___ 101 TTGTAACGAATCTGGAGTCGATCATTTCTTTGTTTCAA---GGTGACGAT 147
..||.||.||.|||.|.|||||.||.||..|||||||| |.|||||
RBAM_010140__ 101 CGGTGACCAACCTGCAATCGATTATATCCGTGTTTCAATCGGATGACG-- 148
BSNT_01690___ 148 GCGAAAG-AAAAAATCGCCGTTGTTGATGAAACAAACGAATTATATCCGG 196
|.||| |..|||||||.||..||||||||||...||...|.||.||||
RBAM_010140__ 149 --GCAAGCAGCAAATCGCGGTGATTGATGAAACGGGCGGGCTGTACCCGG 196
BSNT_01690___ 197 TTTTTTCTAAGCAGCTGAAAGCGGTGGATACTGACGGCGATCT---TGAT 243
..|||.|.||.|||||.|||||||.||||||.|||...||||| .|..
RBAM_010140__ 197 CGTTTGCAAAACAGCTTAAAGCGGCGGATACAGACAATGATCTGCAGGCA 246
BSNT_01690___ 244 GTGAAGCTGTCGAAGCAATCGGAGGATGAGGTCACAAAGCAAGTCAAAGA 293
|||.| |.|||||.|.||.||..|.||.|.|..|||||..||||||||
RBAM_010140__ 247 GTGGA---GACGAAGGAGTCCGAAAAAGATGCCGTAAAGCGTGTCAAAGA 293
BSNT_01690___ 294 ---TGAATCACTCGATGGCATGCTCATCATCAAACGAGATGAAAAAGGGA 340
||||| ..||.||..||.|.|||||||.||.||||.|||||||.|
RBAM_010140__ 294 CGGTGAAT---GGGACGGACTGTTTATCATCAGACAAGATCAAAAAGGAA 340
BSNT_01690___ 341 CCATTTCAGGAACATATAAAGCGTTAACGATTTCTGATGAA--AGCACGT 388
|.||..|||||.|.||.||||||.|.||.|||||||||||| || |||
RBAM_010140__ 341 CGATAACAGGAGCCTACAAAGCGCTGACCATTTCTGATGAATCAG--CGT 388
BSNT_01690___ 389 ATCAAAC-GCTGCAGCAGGCGCTGACGCAAACCAAAACAGCTGTCGGAAC 437
|| |||| .||..|||||||..|.||.||.||.|||||.|||||.|.|||
RBAM_010140__ 389 AT-AAACTTCTCAAGCAGGCTTTAACCCAGACAAAAACCGCTGTTGAAAC 437
BSNT_01690___ 438 AGCGGAGCTCGGCGTGTC-GCAGGAAACGATTAGCAGCCTTTA---TGCG 483
.||..||||||||.|.|| ||||.|||.| |.||||||||.|| |.||
RBAM_010140__ 438 CGCCAAGCTCGGCATTTCGGCAGAAAAAG-TCAGCAGCCTCTACACTCCG 486
BSNT_01690___ 484 CCCGTTACTGTGG--GGCAG--AAG--GCGCTGAAAGAAGGGGCAAAGTC 527
|| || |.||| ||| ||||||.||.|||||||.||.||
RBAM_010140__ 487 CC---------GGAAGTCAGCAAAGACGCGCTGGAAAAAGGGGCGAAATC 527
BSNT_01690___ 528 TGAGGAAGAGCTTGGCCAGACGGTA---GGGCTTGTTTACATTATGCTGT 574
|||||||||||||||.|| |||| ||||||||.|||||.|||||||
RBAM_010140__ 528 TGAGGAAGAGCTTGGTCA---GGTAATGGGGCTTGTATACATCATGCTGT 574
BSNT_01690___ 575 TCGTCATTTATTTTTCGGTGATTATGTATGCCAGCATGATTGCGATGGAG 624
|.|||||.||.||.||.||.||.|||||.||.|||||||||||||||||.
RBAM_010140__ 575 TTGTCATCTACTTCTCAGTTATCATGTACGCAAGCATGATTGCGATGGAA 624
BSNT_01690___ 625 GTCGCTACAGAAAAATCTTCGCGAGTTATGGAAATCCTGATCTCAAGTAT 674
||.||.||.||||||||.||.||.||.||||||||..|.||.|||||.||
RBAM_010140__ 625 GTGGCGACGGAAAAATCGTCCCGCGTCATGGAAATTTTAATTTCAAGCAT 674
BSNT_01690___ 675 GCCGCCGATCCAGCAAATGTTTGCAAAGCTGCTTGGTATCGGGCTTGTCG 724
|||||||||.|||||.||||||||.||.|||.|.|||||||.|||.||.|
RBAM_010140__ 675 GCCGCCGATTCAGCAGATGTTTGCCAAACTGTTCGGTATCGCGCTCGTGG 724
BSNT_01690___ 725 GGATCACACAGCTTGCTATTATTATAGGAGCCGGCTCTCTGTCGCTTAAG 774
|||||||||||.||||..|..|.||.|..||.||.|.|||.||.||.|||
RBAM_010140__ 725 GGATCACACAGTTTGCGGTGCTGATTGCGGCGGGTTATCTCTCACTGAAG 774
BSNT_01690___ 775 CTGAAC---CAAAAGAGCGAAACGGCTTC----ATCTGTCGGCGGATTCC 817
|||||| ||||| .||..||.|.|| |||.|| |.|||.|
RBAM_010140__ 775 CTGAACCCTCAAAA---TGATGCGTCGTCGCCGATCAGT----GCATTTC 817
BSNT_01690___ 818 TTAATCTGACCGACGT----ATCTGCAACCACTGTCATCTATGCTGTCAT 863
|.|||.|.||.||.|| .||| |.||..|..|||||||||||||
RBAM_010140__ 818 TCAATTTTACGGATGTTCCCGTCT----CGACGATAGTCTATGCTGTCAT 863
BSNT_01690___ 864 TTTCTTTTTGCTCGGATACTTTTTGTACGCGACACTTGCCGCGTTTCTCG 913
|||||.|||||||||.||.|||.|.||||||||.||||||||||||||||
RBAM_010140__ 864 TTTCTATTTGCTCGGCTATTTTCTTTACGCGACGCTTGCCGCGTTTCTCG 913
BSNT_01690___ 914 GCAGTGTCGTCAGCAGAATAGAGGACGTGCAGCAAACGA-TCACGCCGAT 962
|||||||.||||||.|.|||||||||||.|||||.|||| ||| ||||||
RBAM_010140__ 914 GCAGTGTTGTCAGCCGGATAGAGGACGTACAGCAGACGATTCA-GCCGAT 962
BSNT_01690___ 963 GACGCTTTTGGTTGTCGCCGGTTTTATGATCGCGATGTTCGGTTT---GA 1009
|....||||.||.||.||.||||||||||||||.||||||||..| .|
RBAM_010140__ 963 GGTTTTTTTAGTCGTGGCAGGTTTTATGATCGCCATGTTCGGCATCGGCA 1012
BSNT_01690___ 1010 ATGCGCCTGACGCAGGATTTATTACGGTAACTTCGTTTATTCCGTTCTTT 1059
|| ||||||||.||.||||||||.||.||.||.|..||||||||.||.
RBAM_010140__ 1013 AT---CCTGACGCCGGTTTTATTACCGTTACATCTTACATTCCGTTTTTC 1059
BSNT_01690___ 1060 ACGCCAATGATTATGTTCCTGCGCGTCGGCATGCTTGATATTCCGTTCTG 1109
|||||.|||||||||||..|.||||||||.|||||.|||||.|||||.||
RBAM_010140__ 1060 ACGCCGATGATTATGTTTTTACGCGTCGGGATGCTCGATATCCCGTTTTG 1109
BSNT_01690___ 1110 GCAGGCGGCTGTCGGAATCGGAATCACACTGCTCACCATTGTCATACT-- 1157
||||||.||.|.||||||||...|.|||||||||||.||.||.|| ||
RBAM_010140__ 1110 GCAGGCTGCGGCCGGAATCGCCCTGACACTGCTCACTATCGTGAT-CTTT 1158
BSNT_01690___ 1158 --GGCCGTTATCGGCGCCAGAATTTATAAAGGCGGTGTATTAATTTACGG 1205
|||.| |||||||.|.||||||.||||||||.||.||.||||||||
RBAM_010140__ 1159 GCGGCGG---TCGGCGCGAAAATTTACAAAGGCGGCGTTTTGATTTACGG 1205
BSNT_01690___ 1206 CAATTCAAGCGCGTTCAAAGCGATCAAACAAGCGCTACGTTTAGCGAAAA 1255
.||..|.||||..|||||||||||||||||||||||.||..|..|.||||
RBAM_010140__ 1206 AAACGCCAGCGGATTCAAAGCGATCAAACAAGCGCTGCGCATCTCCAAAA 1255
BSNT_01690___ 1256 ACTGA 1260
|.|.|
RBAM_010140__ 1256 AATAA 1260
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