Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01689 and RBAM_010130

See Amino acid alignment / Visit BSNT_01689 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence dna-align/BSNT_01689___yhaQ.1.9828.seq
#    -bsequence dna-align/RBAM_010130___yhaQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01689___yhaQ-RBAM_010130___yhaQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01689___yhaQ-RBAM_010130___yhaQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01689___yhaQ
# 2: RBAM_010130___yhaQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 904
# Identity:     715/904 (79.1%)
# Similarity:   715/904 (79.1%)
# Gaps:          14/904 ( 1.5%)
# Score: 2782.5
# 
#
#=======================================

BSNT_01689___      1 GTGCTTACAATTGATCACGTAACGAAGACATTTGG-AGATTATAAAGCCG     49
                     ||||||||||||||..||||||||||.|||||.|| ||.|| ||..||.|
RBAM_010130__      1 GTGCTTACAATTGAAAACGTAACGAAAACATTCGGCAGCTT-TACCGCTG     49

BSNT_01689___     50 TTGACGGATTGGACTTAGATATTCCGGAACAGCAAATGTTCGGTTTATTA     99
                     |||||...|||.||.|..|.||.||.|||..|.||||||||||..|..|.
RBAM_010130__     50 TTGACAATTTGAACCTGCAAATACCTGAAAGGGAAATGTTCGGGCTCCTC     99

BSNT_01689___    100 GGCGCAAACGGAGCGGGAAAAACAACGACGTTTCGCATGATCCTAGGATT    149
                     |||||||||||.|||||||||||.|||||.|||||.|||||..||||..|
RBAM_010130__    100 GGCGCAAACGGCGCGGGAAAAACGACGACCTTTCGGATGATTTTAGGTCT    149

BSNT_01689___    150 ATTAAGCATTACGGA-GGGCTCA-ATCAGCTGG-AAGGGCCGTCCTGTGA    196
                     .||||||.|.||.|| |||  || ||||.|||| ||||||.| ||.||.|
RBAM_010130__    150 TTTAAGCCTGACTGACGGG--CATATCACCTGGAAAGGGCAG-CCGGTCA    196

BSNT_01689___    197 ATTATCATATCAGCAACAAAATCGGTTATCTGCCGGAAGAGCGGGGCCTT    246
                     |||||...|||||..|.||||||||.|||||.||||||||||||||.||.
RBAM_010130__    197 ATTATTCCATCAGTGAAAAAATCGGCTATCTCCCGGAAGAGCGGGGGCTG    246

BSNT_01689___    247 TATCCGAAAATGAAGGTAAGGGATCAGCTCGTCTATCTTGCCAGATTAAA    296
                     |||||||||.|||||||.||.||.|||||.||||||||.||.||||||||
RBAM_010130__    247 TATCCGAAAGTGAAGGTGAGTGACCAGCTTGTCTATCTGGCGAGATTAAA    296

BSNT_01689___    297 AGGGATGGAGAAGCGAGAGGCTGTAAAAGAGCTCGGGACATGGCTTGAAC    346
                     |||.||||..||...||||||.|.||||||||||..|||||||||.||.|
RBAM_010130__    297 AGGAATGGGCAAAAAAGAGGCGGAAAAAGAGCTCATGACATGGCTCGAGC    346

BSNT_01689___    347 GCTTCAATATTACAGATTACGAGAATAAGAAGGTGGAAGAGCTTTCGAAG    396
                     |.|||...||||||||||||.||||||||||.||.||||||||.|||||.
RBAM_010130__    347 GGTTCGGCATTACAGATTACAAGAATAAGAAAGTCGAAGAGCTGTCGAAA    396

BSNT_01689___    397 GGGAATCAGCAGAAAATCCAATTCATTTCGGCAGTTTTGCATAAGCCGGA    446
                     ||.||.||||||||||||||||||||||||||.||..||||||||||.||
RBAM_010130__    397 GGAAACCAGCAGAAAATCCAATTCATTTCGGCCGTCCTGCATAAGCCTGA    446

BSNT_01689___    447 GCTGCTTATTCTTGATGAACCTTTCAGCGGCCTGGACCCTGTCAATGTTG    496
                     .|||||.|||||.|||||||||||||||||.||.||.||.||.|||||.|
RBAM_010130__    447 ACTGCTGATTCTCGATGAACCTTTCAGCGGTCTTGATCCGGTGAATGTCG    496

BSNT_01689___    497 AGCTGCTAAAAGAGGCTGTGATCTCGCTGAAAAACAGCGGCGTTTCTATT    546
                     |||||||.|||||.||.||.||.||..|||||||||||||||||||.||.
RBAM_010130__    497 AGCTGCTGAAAGAAGCGGTTATTTCTTTGAAAAACAGCGGCGTTTCCATC    546

BSNT_01689___    547 TTATTTTCAAGCCATCGGATGGAACATGTGGAGGAGCTTTGTGAGAACCT    596
                     .|.|||||||||||.||.|||||.||||||||.||.|||||||||||..|
RBAM_010130__    547 GTTTTTTCAAGCCACCGAATGGAGCATGTGGAAGAACTTTGTGAGAATTT    596

BSNT_01689___    597 TTGCATATTGCAGAAAGGAAAACCGGTTGTACAAGGCAAGCTGAAGGAGA    646
                     .|||||..|.|||||.||||||||.||.||.||||||||.|||||.||.|
RBAM_010130__    597 GTGCATTCTCCAGAAGGGAAAACCCGTCGTTCAAGGCAATCTGAAAGACA    646

BSNT_01689___    647 TCAAGCGTTCTTTCGGTAAAAAGAATGTTACCATTCACTCCGATGACGAT    696
                     |.|||||.||||||||.|||||.|||||.|||.||||.||.|||||.||.
RBAM_010130__    647 TTAAGCGGTCTTTCGGCAAAAAAAATGTCACCGTTCATTCAGATGATGAC    696

BSNT_01689___    697 CTGCGCTTTTTGCAGTCCCATGAAGGCATTCTTCAATGGAAGGAAACGGC    746
                     ||..|||||||..|..|.|||||||||.|..|..|||||||||||||...
RBAM_010130__    697 CTCAGCTTTTTAAAAACGCATGAAGGCGTCGTGAAATGGAAGGAAACAAA    746

BSNT_01689___    747 AGACGGCGTCAAGCTGCAGATTGCCAATGAAGACATTTCTCAAGAGATTT    796
                     .|||||..|||..||||||.|.||.||||||....|||||||.||.||||
RBAM_010130__    747 TGACGGAATCAGACTGCAGGTCGCGAATGAACCGGTTTCTCAGGATATTT    796

BSNT_01689___    797 T---TGCTATGCTCCAAGGAAAAGGGTTTATCAGAAAGTTTGAGCTTGAA    843
                     |   .||   |||.|||||.|||||.|||||..|.|||||.||..|.|||
RBAM_010130__    797 TCCGGGC---GCTGCAAGGGAAAGGTTTTATACGGAAGTTCGAATTGGAA    843

BSNT_01689___    844 GAGCCGTCACTGCATGATATTTTTATAGAAAAGGTGGGGGCCGTCTATGA    893
                     ||||||||||||||||||||||||||||||||||||||||||||.|||||
RBAM_010130__    844 GAGCCGTCACTGCATGATATTTTTATAGAAAAGGTGGGGGCCGTATATGA    893

BSNT_01689___    894 ATAA    897
                     ||||
RBAM_010130__    894 ATAA    897


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