Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01689 and RBAM_010130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_01689___yhaQ.1.9828.seq
# -bsequence dna-align/RBAM_010130___yhaQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01689___yhaQ-RBAM_010130___yhaQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01689___yhaQ-RBAM_010130___yhaQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01689___yhaQ
# 2: RBAM_010130___yhaQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 904
# Identity: 715/904 (79.1%)
# Similarity: 715/904 (79.1%)
# Gaps: 14/904 ( 1.5%)
# Score: 2782.5
#
#
#=======================================
BSNT_01689___ 1 GTGCTTACAATTGATCACGTAACGAAGACATTTGG-AGATTATAAAGCCG 49
||||||||||||||..||||||||||.|||||.|| ||.|| ||..||.|
RBAM_010130__ 1 GTGCTTACAATTGAAAACGTAACGAAAACATTCGGCAGCTT-TACCGCTG 49
BSNT_01689___ 50 TTGACGGATTGGACTTAGATATTCCGGAACAGCAAATGTTCGGTTTATTA 99
|||||...|||.||.|..|.||.||.|||..|.||||||||||..|..|.
RBAM_010130__ 50 TTGACAATTTGAACCTGCAAATACCTGAAAGGGAAATGTTCGGGCTCCTC 99
BSNT_01689___ 100 GGCGCAAACGGAGCGGGAAAAACAACGACGTTTCGCATGATCCTAGGATT 149
|||||||||||.|||||||||||.|||||.|||||.|||||..||||..|
RBAM_010130__ 100 GGCGCAAACGGCGCGGGAAAAACGACGACCTTTCGGATGATTTTAGGTCT 149
BSNT_01689___ 150 ATTAAGCATTACGGA-GGGCTCA-ATCAGCTGG-AAGGGCCGTCCTGTGA 196
.||||||.|.||.|| ||| || ||||.|||| ||||||.| ||.||.|
RBAM_010130__ 150 TTTAAGCCTGACTGACGGG--CATATCACCTGGAAAGGGCAG-CCGGTCA 196
BSNT_01689___ 197 ATTATCATATCAGCAACAAAATCGGTTATCTGCCGGAAGAGCGGGGCCTT 246
|||||...|||||..|.||||||||.|||||.||||||||||||||.||.
RBAM_010130__ 197 ATTATTCCATCAGTGAAAAAATCGGCTATCTCCCGGAAGAGCGGGGGCTG 246
BSNT_01689___ 247 TATCCGAAAATGAAGGTAAGGGATCAGCTCGTCTATCTTGCCAGATTAAA 296
|||||||||.|||||||.||.||.|||||.||||||||.||.||||||||
RBAM_010130__ 247 TATCCGAAAGTGAAGGTGAGTGACCAGCTTGTCTATCTGGCGAGATTAAA 296
BSNT_01689___ 297 AGGGATGGAGAAGCGAGAGGCTGTAAAAGAGCTCGGGACATGGCTTGAAC 346
|||.||||..||...||||||.|.||||||||||..|||||||||.||.|
RBAM_010130__ 297 AGGAATGGGCAAAAAAGAGGCGGAAAAAGAGCTCATGACATGGCTCGAGC 346
BSNT_01689___ 347 GCTTCAATATTACAGATTACGAGAATAAGAAGGTGGAAGAGCTTTCGAAG 396
|.|||...||||||||||||.||||||||||.||.||||||||.|||||.
RBAM_010130__ 347 GGTTCGGCATTACAGATTACAAGAATAAGAAAGTCGAAGAGCTGTCGAAA 396
BSNT_01689___ 397 GGGAATCAGCAGAAAATCCAATTCATTTCGGCAGTTTTGCATAAGCCGGA 446
||.||.||||||||||||||||||||||||||.||..||||||||||.||
RBAM_010130__ 397 GGAAACCAGCAGAAAATCCAATTCATTTCGGCCGTCCTGCATAAGCCTGA 446
BSNT_01689___ 447 GCTGCTTATTCTTGATGAACCTTTCAGCGGCCTGGACCCTGTCAATGTTG 496
.|||||.|||||.|||||||||||||||||.||.||.||.||.|||||.|
RBAM_010130__ 447 ACTGCTGATTCTCGATGAACCTTTCAGCGGTCTTGATCCGGTGAATGTCG 496
BSNT_01689___ 497 AGCTGCTAAAAGAGGCTGTGATCTCGCTGAAAAACAGCGGCGTTTCTATT 546
|||||||.|||||.||.||.||.||..|||||||||||||||||||.||.
RBAM_010130__ 497 AGCTGCTGAAAGAAGCGGTTATTTCTTTGAAAAACAGCGGCGTTTCCATC 546
BSNT_01689___ 547 TTATTTTCAAGCCATCGGATGGAACATGTGGAGGAGCTTTGTGAGAACCT 596
.|.|||||||||||.||.|||||.||||||||.||.|||||||||||..|
RBAM_010130__ 547 GTTTTTTCAAGCCACCGAATGGAGCATGTGGAAGAACTTTGTGAGAATTT 596
BSNT_01689___ 597 TTGCATATTGCAGAAAGGAAAACCGGTTGTACAAGGCAAGCTGAAGGAGA 646
.|||||..|.|||||.||||||||.||.||.||||||||.|||||.||.|
RBAM_010130__ 597 GTGCATTCTCCAGAAGGGAAAACCCGTCGTTCAAGGCAATCTGAAAGACA 646
BSNT_01689___ 647 TCAAGCGTTCTTTCGGTAAAAAGAATGTTACCATTCACTCCGATGACGAT 696
|.|||||.||||||||.|||||.|||||.|||.||||.||.|||||.||.
RBAM_010130__ 647 TTAAGCGGTCTTTCGGCAAAAAAAATGTCACCGTTCATTCAGATGATGAC 696
BSNT_01689___ 697 CTGCGCTTTTTGCAGTCCCATGAAGGCATTCTTCAATGGAAGGAAACGGC 746
||..|||||||..|..|.|||||||||.|..|..|||||||||||||...
RBAM_010130__ 697 CTCAGCTTTTTAAAAACGCATGAAGGCGTCGTGAAATGGAAGGAAACAAA 746
BSNT_01689___ 747 AGACGGCGTCAAGCTGCAGATTGCCAATGAAGACATTTCTCAAGAGATTT 796
.|||||..|||..||||||.|.||.||||||....|||||||.||.||||
RBAM_010130__ 747 TGACGGAATCAGACTGCAGGTCGCGAATGAACCGGTTTCTCAGGATATTT 796
BSNT_01689___ 797 T---TGCTATGCTCCAAGGAAAAGGGTTTATCAGAAAGTTTGAGCTTGAA 843
| .|| |||.|||||.|||||.|||||..|.|||||.||..|.|||
RBAM_010130__ 797 TCCGGGC---GCTGCAAGGGAAAGGTTTTATACGGAAGTTCGAATTGGAA 843
BSNT_01689___ 844 GAGCCGTCACTGCATGATATTTTTATAGAAAAGGTGGGGGCCGTCTATGA 893
||||||||||||||||||||||||||||||||||||||||||||.|||||
RBAM_010130__ 844 GAGCCGTCACTGCATGATATTTTTATAGAAAAGGTGGGGGCCGTATATGA 893
BSNT_01689___ 894 ATAA 897
||||
RBAM_010130__ 894 ATAA 897
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