Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01684 and RBAM_010100

See Amino acid alignment / Visit BSNT_01684 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence dna-align/BSNT_01684___yhaT.1.9828.seq
#    -bsequence dna-align/RBAM_010100___yhaT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01684___yhaT-RBAM_010100___yhaT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01684___yhaT-RBAM_010100___yhaT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01684___yhaT
# 2: RBAM_010100___yhaT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 498
# Identity:     401/498 (80.5%)
# Similarity:   401/498 (80.5%)
# Gaps:           0/498 ( 0.0%)
# Score: 1617.0
# 
#
#=======================================

BSNT_01684___      1 TTGAATATTAAAGAAAACGATCTGCCGGGCATCGGCAAAAAGTTTGAAAT     50
                     .|||||||||||||||||||||||||.||.|||||.|||||.||.|||||
RBAM_010100__      1 ATGAATATTAAAGAAAACGATCTGCCCGGTATCGGGAAAAAATTCGAAAT     50

BSNT_01684___     51 CGAAACAAGAAGCCACGAAAAAATGACGATTATCATTCATGATGACGGAA    100
                     ||||||.||||..||.||||||||||||||.|||||||||||||||||.|
RBAM_010100__     51 CGAAACGAGAAATCATGAAAAAATGACGATCATCATTCATGATGACGGCA    100

BSNT_01684___    101 GAAGGGAAATTTACCGGTTTAATGACCGGGACCCGGATGAGCTTCTTTCA    150
                     |..|||||||||||.|.|||.|||||||.|||||.|||||||||||..||
RBAM_010100__    101 GGCGGGAAATTTACAGATTTGATGACCGCGACCCTGATGAGCTTCTGGCA    150

BSNT_01684___    151 AATATTTCATTGGATGATTCTGAAGCAAGGCAAATTGCAGCTATTCTCGG    200
                     |..||||||.|.||||||.|.||||||||.||.||||||||.|||.||||
RBAM_010100__    151 AGCATTTCACTTGATGATGCGGAAGCAAGACAGATTGCAGCGATTATCGG    200

BSNT_01684___    201 GGGCATGGTCTATAAACCGCAAGCTCTGGAGTCCATCGAAATGGCCTTCA    250
                     .||.|||||.|||||||||||.||.||.||.||.||.||||||||.||||
RBAM_010100__    201 CGGTATGGTGTATAAACCGCAGGCGCTTGAATCGATTGAAATGGCGTTCA    250

BSNT_01684___    251 GCGATCTGATTATTGAATGGTTTAAGGTCGAAAAAGGCGCCAAATCGATC    300
                     .||||||||||||.|||||||||||.||.||||||||.||.|||.||...
RBAM_010100__    251 ACGATCTGATTATCGAATGGTTTAAAGTTGAAAAAGGGGCAAAAGCGGCA    300

BSNT_01684___    301 GGGCGCACACTCGGAGAGCTTGATGTCCGCCAGAATTACGATGTCACTGT    350
                     |||||.||.|||||.||.||.|||||.||.|||||.||.||.||.||.||
RBAM_010100__    301 GGGCGGACGCTCGGCGAACTGGATGTGCGTCAGAACTATGACGTGACGGT    350

BSNT_01684___    351 GATTGCCATTATCAAACACAACCAGGAAAAGCTCCTAAATCCCGGAGCCG    400
                     .||.|||||.||.||.||.||||||.|||||||..||||.||.||.||.|
RBAM_010100__    351 CATCGCCATCATTAAGCATAACCAGAAAAAGCTTTTAAACCCGGGCGCTG    400

BSNT_01684___    401 ATTCGATTATTGAAGAAAATGACACCCTTGTCCTCTCAGGTGAGAGAAAG    450
                     |||||.|..||||||.|||.||.||.||.||||||||||||||.||||||
RBAM_010100__    401 ATTCGCTCCTTGAAGCAAACGATACACTCGTCCTCTCAGGTGAAAGAAAG    450

BSNT_01684___    451 CATCTGAAGAAACTGATTCACGATTTTCTTTCTGGAGAGGGCGTGTGA    498
                     |||.||||.||.|||||.||.||.||.||.||..||||.||.||||||
RBAM_010100__    451 CATTTGAAAAAGCTGATCCAAGACTTCCTCTCCAGAGACGGAGTGTGA    498


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.