Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01683 and RBAM_010090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_01683___yhaU.1.9828.seq
# -bsequence dna-align/RBAM_010090___yhaU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01683___yhaU-RBAM_010090___yhaU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01683___yhaU-RBAM_010090___yhaU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01683___yhaU
# 2: RBAM_010090___yhaU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1224
# Identity: 947/1224 (77.4%)
# Similarity: 947/1224 (77.4%)
# Gaps: 15/1224 ( 1.2%)
# Score: 3603.5
#
#
#=======================================
BSNT_01683___ 1 ATGGACCATCTTGTATTTGAAGTCGGAACTGCACTTGTCCTTGTGGCAAT 50
|||||||||||.||||||||||||||.||.||..|.||.||||||||.||
RBAM_010090__ 1 ATGGACCATCTCGTATTTGAAGTCGGTACGGCGTTAGTTCTTGTGGCTAT 50
BSNT_01683___ 51 CGCCAGTGTGATCGCCAATAAAATTAAATTTTCGATTATTCCGTTTCTGA 100
.||.|||||.||||||||||||||||||||.|||||.||.||.||.||||
RBAM_010090__ 51 TGCGAGTGTCATCGCCAATAAAATTAAATTCTCGATCATCCCCTTCCTGA 100
BSNT_01683___ 101 TTGTGCTGGGAATGCTTGTTGGACCGCACGCGCCTAAAATGGGGATTATT 150
|..|..|.||||||||.||.||.|||||||||||..||..|||.||.|||
RBAM_010090__ 101 TCATTTTAGGAATGCTCGTCGGGCCGCACGCGCCCCAAGCGGGCATCATT 150
BSNT_01683___ 151 GATCTAACATTTATTCAAAGCAGTGAAATCATCGAGTTTTTCGGGCGAAT 200
||.||.||.|||||..|||||.|.|||.|.||.||.||||||||.||.||
RBAM_010090__ 151 GACCTGACGTTTATCGAAAGCCGGGAAGTGATTGAATTTTTCGGACGGAT 200
BSNT_01683___ 201 GGGCGTACTGTTCCTCCTCTTCTATCTCGGACTCGAATTCTCTGTCGGGA 250
||||||.||||||||||||||.||.|||||.||.||||||||.|||||.|
RBAM_010090__ 201 GGGCGTCCTGTTCCTCCTCTTTTACCTCGGGCTTGAATTCTCGGTCGGAA 250
BSNT_01683___ 251 AGTTAATCAAATCAGGAAAATCAATCGCGGTCGGCGGGACGATTTATATT 300
|.|||.|||||||.|||...||.|||||.|.||||||.||||||||||||
RBAM_010090__ 251 AATTAGTCAAATCCGGACGTTCTATCGCCGCCGGCGGAACGATTTATATT 300
BSNT_01683___ 301 TTGATTAACTTCAGCCTCGGACTGCTTTACGGGTTTATCACCGGATTTTC 350
.|||||||.|||||..|.||.|||.|.|||||.||||||||.||.|||||
RBAM_010090__ 301 CTGATTAATTTCAGTTTAGGGCTGATCTACGGCTTTATCACAGGCTTTTC 350
BSNT_01683___ 351 CTTTCTGGAAGTCCTCATCCTCGCAGGCGTCATCACAATCTCGTCAAGTG 400
||||.|||||||.||..|..|.||.|||||||||||.||.||.|||||.|
RBAM_010090__ 351 CTTTTTGGAAGTGCTTGTATTGGCGGGCGTCATCACGATATCATCAAGCG 400
BSNT_01683___ 401 CGATTGTCGCAAAAGTGCTCGTTGATTTAAAAAGAACCGCCAATCCGGAA 450
|.|||||||||||.|||||.||.||.|||||..|.||.||||||||||||
RBAM_010090__ 401 CCATTGTCGCAAAGGTGCTTGTCGACTTAAAGCGCACGGCCAATCCGGAA 450
BSNT_01683___ 451 ACCGAATTGATTCTCGGCATCATCATGTTTGAAGATATTTTCCTTGCCGT 500
||.||..||||||||||||||||.||||||||.|||||.||.||.||.||
RBAM_010090__ 451 ACGGAGCTGATTCTCGGCATCATTATGTTTGAGGATATCTTTCTGGCGGT 500
BSNT_01683___ 501 ATATCTGTCCGTTGTTTCCGGGCTTGTGCTAGGTGATGCGACATCCGTAG 550
.||..|||||||.||||||||||||||.||.||.||.|||||.||.||.|
RBAM_010090__ 501 TTACTTGTCCGTCGTTTCCGGGCTTGTTCTGGGAGACGCGACGTCTGTCG 550
BSNT_01683___ 551 GGAGTGCACTCTTGTCCATTTTGATCGCCTTCGGTTATATGCTGCTGTTT 600
|..|.||.||..||||.||..|||||||.|||||.|||||||||||||||
RBAM_010090__ 551 GAGGCGCGCTGATGTCAATCGTGATCGCTTTCGGATATATGCTGCTGTTT 600
BSNT_01683___ 601 TTTATCGCAGCAAGAAAACTCCCGCCGCTGTTGAACAAACTGTTGGACAT 650
||.||.||.||..|||||.|.|||||.|||.|||||||.|||.|.||.||
RBAM_010090__ 601 TTCATTGCCGCTCGAAAATTGCCGCCTCTGCTGAACAAGCTGCTTGATAT 650
BSNT_01683___ 651 TCGCTCAAACGAAGTGTTTATTATCGTCATTTTCGCAGCACTCTTTTTTA 700
.||.||||||||.||.|||...||||||||||||||.||.||||||||.|
RBAM_010090__ 651 CCGTTCAAACGAGGTATTTGCCATCGTCATTTTCGCCGCGCTCTTTTTCA 700
BSNT_01683___ 701 TCGCCGGGTTTTCAGAGACGATTCATGTAGCAGAAGCAATCGGCGCGCTG 750
|.|||||.|||||.||.|||||||||||.||.|||||.|||||||||||.
RBAM_010090__ 701 TTGCCGGCTTTTCCGAAACGATTCATGTCGCTGAAGCGATCGGCGCGCTC 750
BSNT_01683___ 751 CTGCTCGGTTTGGTCTTTTCAGAAACAGAGCATTCCGATAGGATTGAACA 800
.|||||||..|.||.|||||.||.||.|..|||||.||.||||||||.||
RBAM_010090__ 751 TTGCTCGGACTCGTGTTTTCGGAGACGGCCCATTCTGACAGGATTGAGCA 800
BSNT_01683___ 801 CCTCGTTGTTCCGTTTCGCGACTTCTTCGGTTCGATGTTCTTTTTCAGCT 850
.||.||.||.|||||.||.|||||.|||||..|.|||||.||.|||||||
RBAM_010090__ 801 TCTTGTCGTGCCGTTCCGTGACTTTTTCGGGGCCATGTTTTTCTTCAGCT 850
BSNT_01683___ 851 TCGGCCTCAGTATCGATCCGTTTTCGCTTGGTGAAGCGGTTTGGCTTGCG 900
||||.|||||.||.|||||||||||.||.||.||.|||||.||||||||.
RBAM_010090__ 851 TCGGTCTCAGCATTGATCCGTTTTCACTCGGAGATGCGGTATGGCTTGCC 900
BSNT_01683___ 901 TTGGGTGCAGTGATTTTGACCATTCTGGGAAATTTTATCGCCGGAATGGT 950
.|.||.||.||..|..||||.|||...|||||.|||||.|||||.|||.|
RBAM_010090__ 901 CTCGGCGCCGTTCTGCTGACGATTGCCGGAAACTTTATTGCCGGCATGAT 950
BSNT_01683___ 951 GGCAGGACGACGCGCAGGGCTTTCTCATAAGGCTTCATCGAATATCGGGC 1000
.||.||.||.||.||.||||||||||||||.||.||.||.||||||||||
RBAM_010090__ 951 CGCCGGGCGCCGGGCGGGGCTTTCTCATAAAGCATCGTCTAATATCGGGC 1000
BSNT_01683___ 1001 TGACGATCGTATCGCGGGGAGAATTTTCGATTATCGTTGCGAATCTCGGA 1050
||||.||.||.||.||.||.|||||.||.||||||||.||.||||||||.
RBAM_010090__ 1001 TGACCATTGTGTCACGCGGCGAATTCTCCATTATCGTCGCAAATCTCGGC 1050
BSNT_01683___ 1051 ATAGCCGGCGGACTGTCAGC--CACATTAAAGCCGTTTGCCGCATTATAT 1098
||.||||||||.|||||.|| ||| ||||| ||.||.|||||.||||||
RBAM_010090__ 1051 ATCGCCGGCGGCCTGTCCGCTTCAC-TTAAA-CCTTTCGCCGCCTTATAT 1098
BSNT_01683___ 1099 GTCCTCATTCTGGCGATTTTGGGACCGCTTG-TCACAAAGGAATCAAAAC 1147
||..|.||.|||||.||.||.|| ||..||| ||||.||.|||||.||.|
RBAM_010090__ 1099 GTTTTGATACTGGCCATCTTCGG-CCCTTTGCTCACGAAAGAATCGAAGC 1147
BSNT_01683___ 1148 GAATTTACCGCTTGCTGAACAAGGTATTTAAATGGAA---GCCTGATGTT 1194
|.||.||.|.|.||.||||||..||.||.|||||||| ||||||....
RBAM_010090__ 1148 GGATATATCTCCTGTTGAACAGCGTGTTCAAATGGAAGACGCCTGAAAAG 1197
BSNT_01683___ 1195 CAGCCCGCAAAAAAACAGGGATAA 1218
.|| |||||.||| ..||||
RBAM_010090__ 1198 AAG-CCGCAGAAA-----TCATAA 1215
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