Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01666 and RBAM_009960

See Amino acid alignment / Visit BSNT_01666 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:20
# Commandline: needle
#    -asequence dna-align/BSNT_01666___yheG.1.9828.seq
#    -bsequence dna-align/RBAM_009960___yheG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01666___yheG-RBAM_009960___yheG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01666___yheG-RBAM_009960___yheG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01666___yheG
# 2: RBAM_009960___yheG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 678
# Identity:     436/678 (64.3%)
# Similarity:   436/678 (64.3%)
# Gaps:         114/678 (16.8%)
# Score: 1297.5
# 
#
#=======================================

BSNT_01666___      1 ATGAAAATCGCTTTATTAGGAGCCAGCGGCCGCGTCGGACAAGCCTTTTT     50
                     |||||.|||||||||.|.|||||.|..||..|.||||||||.||.|||.|
RBAM_009960__      1 ATGAACATCGCTTTACTCGGAGCAACGGGAAGAGTCGGACAGGCTTTTAT     50

BSNT_01666___     51 AACACAAGCTGCAGCAGATGAAAGAT-------TTGATATTTTCGCTCTG     93
                     ||.|.||||    |||   ||||.||       |.||.||.||||||||.
RBAM_009960__     51 AAAAGAAGC----GCA---GAAACATGGACACATGGAGATATTCGCTCTT     93

BSNT_01666___     94 ATCAGAT----CTCAACA-TGCTGATTTTCCCCTTTC-AAAAGACAGAAC    137
                     .||||||    |..|||| |.|     |||||.||.| ||||.||| ||.
RBAM_009960__     94 GTCAGATCAGCCGGAACAGTCC-----TTCCCATTCCTAAAAAACA-AAT    137

BSNT_01666___    138 CATCATGGGGAACGC----CCGCCGCTTAGAAGATGTGAAAAA----AAT    179
                     |||.|..|||||.||    |.||.|    ||||||||    ||    |.|
RBAM_009960__    138 CATAACAGGGAATGCGAGGCGGCGG----GAAGATGT----AAGCCGATT    179

BSNT_01666___    180 AATGGAGAATGCTGA---AATCGTGATCAGCTGTCTAGGCACAGATGGTG    226
                     .||....||.||.||   |.|||||   ||||||||.|||||.||.||||
RBAM_009960__    180 GATTTCCAAAGCGGATACAGTCGTG---AGCTGTCTCGGCACGGACGGTG    226

BSNT_01666___    227 ATGATACCTTGTCAACTGCTATGGCACACATTCTCTCCGCTATGGAGGAA    276
                     |.||||||.|.|||||.||||||.|.||.||..|           ||  |
RBAM_009960__    227 ACGATACCCTTTCAACCGCTATGACCCATATAAT-----------AG--A    263

BSNT_01666___    277 CAGCAT--------ATCA-----AACGGCTTATTACGATCGGCACCGCAG    313
                     ||||||        ||||     |.||.||.||||||||||||||.||.|
RBAM_009960__    264 CAGCATGAAACGGCATCATGTTCAGCGTCTGATTACGATCGGCACGGCGG    313

BSNT_01666___    314 GGATCCTAGATTCCCG--ATATGAACCGGGGAAATACCGGTTTGAAACAA    361
                     |.|||||..|.||.||  .||||  ||.|...|||||||.||||||.|..
RBAM_009960__    314 GTATCCTTCAATCACGGCTTATG--CCTGATCAATACCGATTTGAATCGG    361

BSNT_01666___    362 ATGAATCGAAACG-AAAGCAGACCCGCGCAGCCAAGGAGCATGCAAAAGT    410
                     ..|||||.||||| |||.|| ||..|.||.||.|||||.||.||....||
RBAM_009960__    362 CAGAATCAAAACGAAAATCA-ACAAGAGCCGCAAAGGAACACGCCCGCGT    410

BSNT_01666___    411 ATACGAAATGCT-----TAAAGAATCATCATTAGACTGGACAATCATCTG    455
                     ||||||||||||     .|.||.|||     |.||||||||.||||||||
RBAM_009960__    411 ATACGAAATGCTGCTGGCAGAGGATC-----TTGACTGGACGATCATCTG    455

BSNT_01666___    456 CCCCACTTACCTCCCGGACGGAACAGCAACCGGCGTTTA-----TCGTAC    500
                     .|||||.|||||.||.||||||...||..||||.|||||     |||.||
RBAM_009960__    456 TCCCACCTACCTTCCTGACGGAGATGCTGCCGGAGTTTACCGGTTCGAAC    505

BSNT_01666___    501 -GGAGCGTAACGTTTTGCCTGAGGGCGGCAC---AAGCATTTCGGTCGGC    546
                      |||.||   |.||   |||||.|.||||.|   ||.||   |.|||||.
RBAM_009960__    506 AGGATCG---CCTT---CCTGAAGACGGCGCTGAAATCA---CCGTCGGA    546

BSNT_01666___    547 GATACTGCGGACTTTTTATATCGTGAGCTCGTTACAG---GTGAGTATGT    593
                     ||.||.|||.|||||.|.||.||||||||..|  |||   | .|||.|||
RBAM_009960__    547 GACACGGCGCACTTTCTGTACCGTGAGCTGAT--CAGCCCG-CAGTTTGT    593

BSNT_01666___    594 CGGATACCGTGTCGGACTGGCTTATTGA    621
                     |.||.|.||.||.|||||||||||.|||
RBAM_009960__    594 CAGAAAACGGGTGGGACTGGCTTACTGA    621


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