Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01666 and RBAM_009960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:20
# Commandline: needle
# -asequence dna-align/BSNT_01666___yheG.1.9828.seq
# -bsequence dna-align/RBAM_009960___yheG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01666___yheG-RBAM_009960___yheG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01666___yheG-RBAM_009960___yheG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01666___yheG
# 2: RBAM_009960___yheG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 678
# Identity: 436/678 (64.3%)
# Similarity: 436/678 (64.3%)
# Gaps: 114/678 (16.8%)
# Score: 1297.5
#
#
#=======================================
BSNT_01666___ 1 ATGAAAATCGCTTTATTAGGAGCCAGCGGCCGCGTCGGACAAGCCTTTTT 50
|||||.|||||||||.|.|||||.|..||..|.||||||||.||.|||.|
RBAM_009960__ 1 ATGAACATCGCTTTACTCGGAGCAACGGGAAGAGTCGGACAGGCTTTTAT 50
BSNT_01666___ 51 AACACAAGCTGCAGCAGATGAAAGAT-------TTGATATTTTCGCTCTG 93
||.|.|||| ||| ||||.|| |.||.||.||||||||.
RBAM_009960__ 51 AAAAGAAGC----GCA---GAAACATGGACACATGGAGATATTCGCTCTT 93
BSNT_01666___ 94 ATCAGAT----CTCAACA-TGCTGATTTTCCCCTTTC-AAAAGACAGAAC 137
.|||||| |..|||| |.| |||||.||.| ||||.||| ||.
RBAM_009960__ 94 GTCAGATCAGCCGGAACAGTCC-----TTCCCATTCCTAAAAAACA-AAT 137
BSNT_01666___ 138 CATCATGGGGAACGC----CCGCCGCTTAGAAGATGTGAAAAA----AAT 179
|||.|..|||||.|| |.||.| |||||||| || |.|
RBAM_009960__ 138 CATAACAGGGAATGCGAGGCGGCGG----GAAGATGT----AAGCCGATT 179
BSNT_01666___ 180 AATGGAGAATGCTGA---AATCGTGATCAGCTGTCTAGGCACAGATGGTG 226
.||....||.||.|| |.||||| ||||||||.|||||.||.||||
RBAM_009960__ 180 GATTTCCAAAGCGGATACAGTCGTG---AGCTGTCTCGGCACGGACGGTG 226
BSNT_01666___ 227 ATGATACCTTGTCAACTGCTATGGCACACATTCTCTCCGCTATGGAGGAA 276
|.||||||.|.|||||.||||||.|.||.||..| || |
RBAM_009960__ 227 ACGATACCCTTTCAACCGCTATGACCCATATAAT-----------AG--A 263
BSNT_01666___ 277 CAGCAT--------ATCA-----AACGGCTTATTACGATCGGCACCGCAG 313
|||||| |||| |.||.||.||||||||||||||.||.|
RBAM_009960__ 264 CAGCATGAAACGGCATCATGTTCAGCGTCTGATTACGATCGGCACGGCGG 313
BSNT_01666___ 314 GGATCCTAGATTCCCG--ATATGAACCGGGGAAATACCGGTTTGAAACAA 361
|.|||||..|.||.|| .|||| ||.|...|||||||.||||||.|..
RBAM_009960__ 314 GTATCCTTCAATCACGGCTTATG--CCTGATCAATACCGATTTGAATCGG 361
BSNT_01666___ 362 ATGAATCGAAACG-AAAGCAGACCCGCGCAGCCAAGGAGCATGCAAAAGT 410
..|||||.||||| |||.|| ||..|.||.||.|||||.||.||....||
RBAM_009960__ 362 CAGAATCAAAACGAAAATCA-ACAAGAGCCGCAAAGGAACACGCCCGCGT 410
BSNT_01666___ 411 ATACGAAATGCT-----TAAAGAATCATCATTAGACTGGACAATCATCTG 455
|||||||||||| .|.||.||| |.||||||||.||||||||
RBAM_009960__ 411 ATACGAAATGCTGCTGGCAGAGGATC-----TTGACTGGACGATCATCTG 455
BSNT_01666___ 456 CCCCACTTACCTCCCGGACGGAACAGCAACCGGCGTTTA-----TCGTAC 500
.|||||.|||||.||.||||||...||..||||.||||| |||.||
RBAM_009960__ 456 TCCCACCTACCTTCCTGACGGAGATGCTGCCGGAGTTTACCGGTTCGAAC 505
BSNT_01666___ 501 -GGAGCGTAACGTTTTGCCTGAGGGCGGCAC---AAGCATTTCGGTCGGC 546
|||.|| |.|| |||||.|.||||.| ||.|| |.|||||.
RBAM_009960__ 506 AGGATCG---CCTT---CCTGAAGACGGCGCTGAAATCA---CCGTCGGA 546
BSNT_01666___ 547 GATACTGCGGACTTTTTATATCGTGAGCTCGTTACAG---GTGAGTATGT 593
||.||.|||.|||||.|.||.||||||||..| ||| | .|||.|||
RBAM_009960__ 547 GACACGGCGCACTTTCTGTACCGTGAGCTGAT--CAGCCCG-CAGTTTGT 593
BSNT_01666___ 594 CGGATACCGTGTCGGACTGGCTTATTGA 621
|.||.|.||.||.|||||||||||.|||
RBAM_009960__ 594 CAGAAAACGGGTGGGACTGGCTTACTGA 621
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