Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01665 and RBAM_009950
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:20
# Commandline: needle
# -asequence dna-align/BSNT_01665___yheH.1.9828.seq
# -bsequence dna-align/RBAM_009950___yheH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01665___yheH-RBAM_009950___yheH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01665___yheH-RBAM_009950___yheH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01665___yheH
# 2: RBAM_009950___yheH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2099
# Identity: 1493/2099 (71.1%)
# Similarity: 1493/2099 (71.1%)
# Gaps: 154/2099 ( 7.3%)
# Score: 5133.5
#
#
#=======================================
BSNT_01665___ 1 ATGAAAATAGGAAAAACGTTATGGAGATACGCACTTCTTTATCGAAAATT 50
|||||.|..||.|.||..|||||||..|||||.||||..|||...||..|
RBAM_009950__ 1 ATGAAGACCGGGAGAAGATTATGGAATTACGCGCTTCAATATAAGAAGCT 50
BSNT_01665___ 51 GCTGATCA----CAGCCGTCCTTTTGCTAACTGTTGCCGTCGGTGCAGAA 96
|||||| | |.|.||||| ||||.|.|.||||.|||||..|.||.
RBAM_009950__ 51 GCTGAT-ATGGGCGGTCGTCC---TGCTCATTATTGCGGTCGGCACTGAG 96
BSNT_01665___ 97 CTGACTGGGCCCTTTATTGGCAAAAAAATGATAGACGACCATATCCTCGG 146
|||||.||.||.|||||.||.|||||||||||.||||||||.||.|||||
RBAM_009950__ 97 CTGACCGGCCCGTTTATCGGAAAAAAAATGATTGACGACCACATTCTCGG 146
BSNT_01665___ 147 CATTGAGAAAACATGGTATGAAG---CTGCGGAAAAAGATAAAAATGCCG 193
||||||.|||||||||..|.||| |||||| |.|||......||||
RBAM_009950__ 147 CATTGAAAAAACATGGGTTAAAGCCTCTGCGG---ACGATCCGGGCGCCG 193
BSNT_01665___ 194 TTCAGTTTCACGGCGTC-TCA-TATGTCAGAGAGGACCGATTGCAGGAGC 241
||||.||| |||.|.| |.| ||||||||.|||||||| ||
RBAM_009950__ 194 -TCAGGTTC-CGGGGGCATGATTATGTCAGGGAGGACCG---------GC 232
BSNT_01665___ 242 CTGTTTCAAA----------AGCAAA-----AGAAGCGCATATTTATCAA 276
||||| | |||| |||.|||||.|||||||||
RBAM_009950__ 233 -----TCAAACCGGGGGCGGA-CAAAACCGGAGAGGCGCACATTTATCAA 276
BSNT_01665___ 277 GTGGGAATGGCGTTCTATTTTGTTGATCAGGCTGTCAGCTTCGACGGGAA 326
||.||...||..|.||||||||||||.|...|.|||||.||.|||||.||
RBAM_009950__ 277 GTCGGTGCGGGCTACTATTTTGTTGACCGTCCCGTCAGTTTTGACGGAAA 326
BSNT_01665___ 327 TAGAACGGTTTCTGACGGGAAGCTGACGATCACAAAAGG-AGACAAGAGC 375
..|..||||.||||||||...||||||.||..||||.|| |.|.|| |||
RBAM_009950__ 327 CCGTTCGGTGTCTGACGGCCGGCTGACAATATCAAACGGTAAAGAA-AGC 375
BSNT_01665___ 376 CGGGCATATGCTGCCGAAAAGCTGACTAAG-CAGGAACTTTTCCAGTTCT 424
.||.|||||.|.||| |..|..|.|..||| |||||..||||.||.||.|
RBAM_009950__ 376 AGGTCATATCCCGCC-ATTACGTTATCAAGACAGGAGATTTTTCAATTTT 424
BSNT_01665___ 425 ATCAGCCGGAAATAAAGGGAATGGTGTTAC--TGATCTGCC-TGTATGGG 471
|.|..||.||||||||.|||.||.|| || ||| |.||| |.||.|.|
RBAM_009950__ 425 ACCGTCCCGAAATAAAAGGATTGCTG--ACGTTGA-CCGCCATTTACGCG 471
BSNT_01665___ 472 GGCTTGCTTGTGTTTTCGGTATTCTTTCAATACGGACAGCATTATCTGCT 521
||..||||..|||||||.||||..|||||.|||||.||||||||||||||
RBAM_009950__ 472 GGACTGCTCATGTTTTCCGTATGTTTTCATTACGGCCAGCATTATCTGCT 521
BSNT_01665___ 522 GCAGATGAGCGCCAATCGGATTATTCAAAAGATGAGGCAGGACGTGTTTT 571
|||||||.|.||.||.|||||.||.||....|||||||||||.||.||||
RBAM_009950__ 522 GCAGATGGGAGCGAACCGGATCATACAGCGCATGAGGCAGGATGTATTTT 571
BSNT_01665___ 572 CGCACATACAGAGTATGCCGATTCGCTATTTTGACAACCTTCCGGCCGGA 621
|.|||||.||||..||||||||.|||||.|||||.||.||.||.||||||
RBAM_009950__ 572 CACACATTCAGAAAATGCCGATCCGCTACTTTGATAATCTGCCTGCCGGA 621
BSNT_01665___ 622 AAAGTCGTTGCGCGGATTACCAATGATACGGAGGCTATCAGGGATTTATA 671
||||||||.||.||.|||||.|||||.||.||.||..|||||||||||||
RBAM_009950__ 622 AAAGTCGTGGCCCGCATTACGAATGACACAGAAGCGGTCAGGGATTTATA 671
BSNT_01665___ 672 TGTCACAGTGCTTTCAACATTTGTGACAAGCGGAATCTATATGTTCGGGA 721
|||.||.|||||.||.||||||.|.||||||||..|.||||||.||||.|
RBAM_009950__ 672 TGTAACGGTGCTGTCGACATTTATCACAAGCGGCGTTTATATGCTCGGCA 721
BSNT_01665___ 722 TATTCACGGCTTTGTTTCTGCTTGATGTGAAGCTTG----CGTTTGTATG 767
|.||.|||||..|||||.|||||||.||.|.|||.| ||||||..||
RBAM_009950__ 722 TTTTTACGGCGCTGTTTATGCTTGACGTCAGGCTGGCCGCCGTTTGCCTG 771
BSNT_01665___ 768 TCTGGCAATTGTGCCGATTATCTGGCTGTGGTCTGTCATATACCGGAGAT 817
||| |||.|.||||||.|...|.|.|||||.||..|.|||||.|.||
RBAM_009950__ 772 -CTG---ATTATTCCGATTTTAATGATCTGGTCGGTTGTGTACCGCAAAT 817
BSNT_01665___ 818 ----ATGCGTCATATTACAACCAAAAAATCCGCTCGATCAACAGTGACAT 863
||.|||| |.|||||||||||||||.||.||.||||||.||||
RBAM_009950__ 818 ACGCATCCGTC----TTCAACCAAAAAATCCGTTCCATTAACAGTAACAT 863
BSNT_01665___ 864 TAACGCAAAAATGAATGAGTCAATTCAAGGCATGACCATTATTCAGGCTT 913
.||.||.||||||||.||.||.||||||||.|||.|.|||||||||||.|
RBAM_009950__ 864 CAATGCGAAAATGAACGAATCCATTCAAGGAATGCCGATTATTCAGGCGT 913
BSNT_01665___ 914 TCCGCCATCAAAAGGAAACAATGAGAGAATTTGAGGAATTAAATGAATCA 963
||||||...||||||||||.||||..||||||||.|||||.||||||.|.
RBAM_009950__ 914 TCCGCCGCGAAAAGGAAACGATGAAGGAATTTGAAGAATTGAATGAAGCT 963
BSNT_01665___ 964 CATTTT---TATTTCCAA-AACAGGATGCTGAATTTAAACTCCTTAATGT 1009
|||||| ||| || ||||..||||||...|||||.|||.|.||||
RBAM_009950__ 964 CATTTTCGCTAT----AAGAACAAAATGCTGTCCTTAAATTCCCTCATGT 1009
BSNT_01665___ 1010 CCCATAATTTGGTCAATGTCATCCGCAATCTTGCGTTCGTCTGTCTGATC 1059
||||.|.|.|.||||||||..|.||||||||.|||||.|||.|.||||||
RBAM_009950__ 1010 CCCACAGTCTTGTCAATGTGTTGCGCAATCTGGCGTTTGTCGGGCTGATC 1059
BSNT_01665___ 1060 TGGCATTTTGGCGGTGCGAGCCTGAATGCGGCCGGGATTGTTTCTATCGG 1109
|||.||||.||.||.|||||.||||.|||||||||.||||||||.|||||
RBAM_009950__ 1060 TGGTATTTCGGAGGCGCGAGTCTGAGTGCGGCCGGAATTGTTTCAATCGG 1109
BSNT_01665___ 1110 TGTGCTGTACGCGTTTGTCGATTATTTGAACCGGTTATTTCAGCCGATCA 1159
|||..|.|||||||||||.||||||||.|||||.||.||.||||||.|.|
RBAM_009950__ 1110 TGTTTTATACGCGTTTGTTGATTATTTAAACCGTTTGTTCCAGCCGGTTA 1159
BSNT_01665___ 1160 CAGGCATCGTCAATCAGTTTTCAAAGCTGGAGCTTGCAAGGGTCTCCGCC 1209
|.||.||.|||||.||.|||||||||||.||..|.||..|.|||||.|||
RBAM_009950__ 1160 CGGGGATTGTCAACCAATTTTCAAAGCTTGAATTGGCCCGTGTCTCTGCC 1209
BSNT_01665___ 1210 GGGCGTGTTTTTGAACTGCTTGAAGAAAAGAATACGGAAGAACCGGGTGA 1259
|...|.||.||.||.||..|..|.||..||.|.|||||||||
RBAM_009950__ 1210 GCCAGAGTATTCGAGCTTTTACAGGAGGAGGAAACGGAAGAA-------- 1251
BSNT_01665___ 1260 ACCGGCGAAGGAGCGCGCGCTG------GGGCGG--------GTTGAATT 1295
|||||.||.|.|||.| .||||| ||.|||||
RBAM_009950__ 1252 ------GAAGGCGCTCCCGCAGACAGAAAGGCGGAAGGGACAGTGGAATT 1295
BSNT_01665___ 1296 TCGTGATGTGTCATTTGCGTATCAAGAAGGTGAAGAGGTATTAAAGCGTA 1345
.||.|||||.||.||||.|||||.|.|.||.||||||||..|.||.|..|
RBAM_009950__ 1296 CCGCGATGTATCTTTTGGGTATCGAAAGGGAGAAGAGGTGCTGAAACACA 1345
BSNT_01665___ 1346 TTTCCTTTACTGCGCAAAAAGGCGAAACCGTAGCGCTCGTCGGCCATACC 1395
|...||||||.||..|||||||.||.||.||.||.||||||||||||||.
RBAM_009950__ 1346 TCAGCTTTACAGCTGAAAAAGGAGAGACGGTCGCCCTCGTCGGCCATACG 1395
BSNT_01665___ 1396 GGATCAGGAAAAAGCTCGATTTTGAATCTGCTGTTTCGTTTTTATGATGC 1445
||.||.||.||||||||.|||||||||||.|||||.||||||||||||||
RBAM_009950__ 1396 GGGTCCGGCAAAAGCTCCATTTTGAATCTTCTGTTCCGTTTTTATGATGC 1445
BSNT_01665___ 1446 GCAAAAAGGTGATGTCTTAATTGATGGA----AAAAGCATTTACAACATG 1491
.||||||||.|||.| |.||.|||| ||||||||.|||..||||
RBAM_009950__ 1446 CCAAAAAGGAGATAT----ACTGCTGGACGATAAAAGCATATACGGCATG 1491
BSNT_01665___ 1492 TCAAGACAGGAACTCAGATCCCATATGGGCATTGTGCTTCAGGACCCGTA 1541
||.||.|||||.||.||.||.|||||||||||||||||.||.||||||||
RBAM_009950__ 1492 TCGAGGCAGGAGCTGAGGTCGCATATGGGCATTGTGCTGCAAGACCCGTA 1541
BSNT_01665___ 1542 -CTTATTCTCGGGTACAATCGGATCTAACGTAAGTCTGGATGA----CGA 1586
||| ||||||||.||.|||||.||.||.||.|..||.||||| ||.
RBAM_009950__ 1542 TCTT-TTCTCGGGCACGATCGGCTCCAATGTGACACTCGATGATCAGCGT 1590
BSNT_01665___ 1587 A---------AGAATGACTGAAGAAGAAATAAAAAATGCACTGCGGCAAG 1627
| ||.| |.|.|||||| ||.||.||.||||
RBAM_009950__ 1591 ATTTCTTTGGAGCA-GGCGGAAGAA------------GCGCTTCGCCAAG 1627
BSNT_01665___ 1628 TCGGTGCTG--AGCCTCTTCTTAAGAAGCTTCCGAAGGGCATTAATGAGC 1675
||||.||.| || ||||||..|....||.|||||||||||.|..||||
RBAM_009950__ 1628 TCGGCGCCGCAAG--TCTTCTGCAATCCCTGCCGAAGGGCATCAGAGAGC 1675
BSNT_01665___ 1676 CCGTGATTGAAAAAGGCAGCACGCTATCCTCTGGAGAGCGGCAGTTAATT 1725
||||.|..|||||||||.||||.||.|||||.||..||||.|||.|.|||
RBAM_009950__ 1676 CCGTTACCGAAAAAGGCGGCACACTGTCCTCAGGCCAGCGTCAGCTGATT 1725
BSNT_01665___ 1726 TCTTTCGCTAGAGCTTTGGCGTTTGATCCCGCGATCTTGATTTTAGATGA 1775
|||||.||.|||||..|.|.|||.|||||.||.||.||.|||||.|||||
RBAM_009950__ 1726 TCTTTTGCAAGAGCGCTTGTGTTCGATCCGGCCATTTTAATTTTGGATGA 1775
BSNT_01665___ 1776 GGCAACGGCGCATATTGATACAGAGACAGAGGCCGTGATCCAGAAGGCGC 1825
|||.||||||||.|||||.||.||.|||||.||.||.||.||.||.||||
RBAM_009950__ 1776 GGCGACGGCGCACATTGACACCGAAACAGAAGCAGTCATTCAAAAAGCGC 1825
BSNT_01665___ 1826 TTGATGTCGTCAAACAAGGACGCACCACCTTCGTCATCGCTCACCGGCTT 1875
|..|.|||||..||.||||.|||||.||.||..|.|||||.||.||||||
RBAM_009950__ 1826 TGCAAGTCGTTCAAGAAGGGCGCACGACATTTATTATCGCCCATCGGCTT 1875
BSNT_01665___ 1876 TCAACAATCAGAAATGCTGATCAGATTTTGGTTCTTGATAAAGGAGAAAT 1925
||.||.||||||.|.||.||.||||||.|.||.||.||.||.||....||
RBAM_009950__ 1876 TCCACGATCAGACACGCAGACCAGATTCTCGTGCTGGAAAAGGGCCGCAT 1925
BSNT_01665___ 1926 TGTTGAGAGAGGGAA-CCACGAGGAATTGATGGCATTAGAAGGCCGATAT 1974
|.|||| |.|||||| |||.||.|||||.|||||...|.|.||.|..||.
RBAM_009950__ 1926 TATTGA-AAAGGGAAGCCATGACGAATTAATGGCGCAAAAGGGGCAGTAC 1974
BSNT_01665___ 1975 TATCAAATGTATGAACTGCA-AAAGGGACAGAAACATTCCATTGCATAA 2022
.|.||||||||||||.|||| |||||.||.|..| |.|||...|..|||
RBAM_009950__ 1975 CACCAAATGTATGAATTGCAGAAAGGAACGGCGA-AGTCCGCGGTGTAA 2022
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