Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01664 and RBAM_009940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:20
# Commandline: needle
# -asequence dna-align/BSNT_01664___yheI.1.9828.seq
# -bsequence dna-align/RBAM_009940___yheI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01664___yheI-RBAM_009940___yheI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01664___yheI-RBAM_009940___yheI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01664___yheI
# 2: RBAM_009940___yheI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1794
# Identity: 1324/1794 (73.8%)
# Similarity: 1324/1794 (73.8%)
# Gaps: 72/1794 ( 4.0%)
# Score: 4726.0
#
#
#=======================================
BSNT_01664___ 1 ATGTTTTCAGTTTTGAAAAAGCTTGGCTGGTTTTTTAAGGCGTACTGGCT 50
.|||||.|.||.||.||||||||.|..|||||||||||.||.||.|||||
RBAM_009940__ 1 TTGTTTACTGTATTAAAAAAGCTCGCATGGTTTTTTAAAGCCTATTGGCT 50
BSNT_01664___ 51 GCGCTATACGATTGCGATTGTCCTTTTATTAGCAGTCAATGTCATTGAAA 100
|||||||||||..||||||||.||.|||||....||.|||||||||||||
RBAM_009940__ 51 GCGCTATACGACAGCGATTGTTCTGTTATTGATTGTGAATGTCATTGAAA 100
BSNT_01664___ 101 TGTTTCCGCCTAAGCTCTTGGGGAACGCCATAGATGATATGAAAGCAGGG 150
|||||||||||||.||..|.||.|||||.|||||.||||||||.||.||.
RBAM_009940__ 101 TGTTTCCGCCTAAACTTCTCGGTAACGCGATAGACGATATGAAGGCGGGC 150
BSNT_01664___ 151 GCATTTACTGCGGAA-----GGGCTGCTGTTTTATATCGGTATCTTTTTT 195
|..||||| || |||.||||||||||.||..||.|.|||.|.
RBAM_009940__ 151 GTGTTTAC-----AAAAAGCGGGATGCTGTTTTACATATGTGTATTTCTC 195
BSNT_01664___ 196 GTGCTGACGGCGGCCGTGTATATCATGTCTTATTTTTGGATGCATCAGCT 245
|...|.|||||.|||||.|||.|..|||||||||||||||||.|||||||
RBAM_009940__ 196 GCATTAACGGCAGCCGTCTATTTACTGTCTTATTTTTGGATGTATCAGCT 245
BSNT_01664___ 246 GTTTGGCGGAGCGAATCTGATGGAGAAAATTCTTCGTACGAAGCTGATGG 295
.||.|||||.||||||.|.||||||||.|||||.|||.|.||||||||||
RBAM_009940__ 246 TTTCGGCGGGGCGAATGTCATGGAGAAGATTCTCCGTTCAAAGCTGATGG 295
BSNT_01664___ 296 ---GGCATTTGCTGACT----ATGTCGCCGCCGTTTTATGAAAAAAACCG 338
|||.| || |||||.|||||||||||.||.|||.||.|
RBAM_009940__ 296 GAAGGCTT-------CTTCAAATGTCACCGCCGTTTTACGAGAAATACAG 338
BSNT_01664___ 339 AACAGGCGATTTAATGGCACGAGGGACAAATGATCTT-CAGGCCGTCAGT 387
|||.||||||||||||||.||.||||||||||| ||| ||||||||||||
RBAM_009940__ 339 AACGGGCGATTTAATGGCGCGGGGGACAAATGA-CTTGCAGGCCGTCAGT 387
BSNT_01664___ 388 TTAACCACAGGGTTTGGCATCTTGACGTTAGTTGATTCTACGATGTTTAT 437
.|.||.||.||.||.||..||||.|||.|.||||||||.|||||||.|||
RBAM_009940__ 388 ATGACGACGGGCTTCGGGGTCTTAACGCTCGTTGATTCAACGATGTATAT 437
BSNT_01664___ 438 GATGACGATCTTTTTGACAATGGGGTTTTTGATCAGCTGGAAGCTGACCT 487
|.|||||||.|||||||||||||||.||.|.|||||||||||||||||.|
RBAM_009940__ 438 GCTGACGATATTTTTGACAATGGGGCTTCTCATCAGCTGGAAGCTGACAT 487
BSNT_01664___ 488 TTGCCGCCATTATCCCGCTTCCAGTCATGGCGATTGCAATCAGTCTATAT 537
|||||||.|||||.|||||.||..|.||||||..|||..||||.||.||.
RBAM_009940__ 488 TTGCCGCGATTATTCCGCTGCCGATAATGGCGGCTGCGGTCAGCCTGTAC 537
BSNT_01664___ 538 GGAAGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGC 587
||||..||.||.||||||||||||||.||.||.||..|.||.|||||..|
RBAM_009940__ 538 GGAAAAAAGATCCATGAGCGGTTTACGGAAGCGCAGGATGCTTTCGGATC 587
BSNT_01664___ 588 GCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCG 637
..|.|||||||..||||||||.||.||.||.|||||.|||||.||.||.|
RBAM_009940__ 588 ATTAAATGACAAGGTGCTGGAGTCGGTATCCGGCGTTCGGGTCATCCGGG 637
BSNT_01664___ 638 CGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCT 687
|.|..||.|||||||.|||.|||||..|||||||...|||.||||||||.
RBAM_009940__ 638 CTTTCGTACAGGAAAAAAATGATGTCAGCCGGTTCGGTGATATGACCGCG 687
BSNT_01664___ 688 GATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGA 737
|||||.|||.|||||||.|||||.|||||.|||||.||||||||.|||||
RBAM_009940__ 688 GATGTATATGAGAAAAACATGAAGGTGGCGTTTATCGATTCACTTTTTGA 737
BSNT_01664___ 738 GCCGACGGTGAAACTGCTTGTCGGCGCAAGCTATCTGATTGGGCTCGGCT 787
.|||||.||||||||.||.||||||...||||||||.||.||.|||||||
RBAM_009940__ 738 ACCGACTGTGAAACTTCTCGTCGGCCTCAGCTATCTCATCGGTCTCGGCT 787
BSNT_01664___ 788 ACGGAGCGTTTCTTGTATTCCGGAACGAGCTGACGCTTGGAGAGTTAGTG 837
||||.||.|.|||.||.||.|..|||..|||||||||.||||||.|.||.
RBAM_009940__ 788 ACGGCGCTTATCTCGTTTTTCAAAACCGGCTGACGCTGGGAGAGCTGGTA 837
BSNT_01664___ 838 TCCTTTAACGTTTATCTCGGCATGATGATTTGGCCGATGTTTGCAATCGG 887
||.||||||||.||||||||.||||||||.||||||||||||||.|||||
RBAM_009940__ 838 TCGTTTAACGTGTATCTCGGAATGATGATCTGGCCGATGTTTGCGATCGG 887
BSNT_01664___ 888 TGAACTCATTAACGTGATGCAGCGCGGCAATGCGTCATTAGACCGGGTAA 937
.|||.|.||.||..|.|||||||||||.|||||.||.||.||.||.||.|
RBAM_009940__ 888 AGAATTAATCAATATTATGCAGCGCGGAAATGCCTCCTTGGATCGTGTCA 937
BSNT_01664___ 938 ATGAAACTCTTTCTTATGAAACGGATGTGACAGATCCAAAACAGCCCGCT 987
||||.||.|||||.|||||..|.||.|||||||..||.||.||.|||||.
RBAM_009940__ 938 ATGAGACGCTTTCCTATGAGCCAGACGTGACAGGACCCAAGCACCCCGCC 987
BSNT_01664___ 988 G--ATCTTAAAGAGCCTGGAGATATCGTTTTCAGTCATGTCAGCTTT-AC 1034
| ||| ||.|||||.||...|.|.|||||....||.||.| |||| ||
RBAM_009940__ 988 GGCATC--AAGGAGCCCGGGCGTCTTGTTTTTGAACAAGTGA-CTTTCAC 1034
BSNT_01664___ 1035 ATATCCAAGCTCAACAAGTGACAATC---TTCAGGATATTTCATTTACGG 1081
.|||||.|||..|.| |.|||...| ||| .|||.|.||.|||.|.|
RBAM_009940__ 1035 GTATCCGAGCGGAGC--GGGACCGGCGGTTTC-TGATGTATCTTTTTCCG 1081
BSNT_01664___ 1082 TGCGAAAAGGGCAGACTGTCGGGATTGCAGGTAAAACCGGGAGCGGAAAA 1131
|...||||||||||||..||||.||.|..||.||.||.||.||||||||.
RBAM_009940__ 1082 TAGAAAAAGGGCAGACACTCGGCATCGTCGGGAAGACGGGAAGCGGAAAG 1131
BSNT_01664___ 1132 ACGACAATTATTAAGCAGCTTTTGCGCCAGTATCCTCTAGGTGAAGGGAG 1181
|||||.||.|||||||||||.|||||..|.|||||.|..||.| .|||||
RBAM_009940__ 1132 ACGACGATCATTAAGCAGCTGTTGCGTGAATATCCGCCCGGCG-CGGGAG 1180
BSNT_01664___ 1182 C-ATTACATTTTCAGGTGTACCGATTCAGCAAATCCCTCTTGACCGTCTC 1230
| ||.||.|||.||||.||.|||||||||.|.||.||.|||||....|||
RBAM_009940__ 1181 CAATCACGTTTACAGGCGTTCCGATTCAGGAGATTCCGCTTGAGGAGCTC 1230
BSNT_01664___ 1231 CGCGGATGGATCGGATATGTGCCTCAGGATCATTTACTGTTTTCACGGAC 1280
|||||.||||||||.||||||||.|||||||||.|..|.||||||..|||
RBAM_009940__ 1231 CGCGGGTGGATCGGCTATGTGCCGCAGGATCATATTTTATTTTCAAAGAC 1280
BSNT_01664___ 1281 TGTAAAAGAAAATATTTTATACGGAAAACAGGATGCAACTGATAAAGAGG 1330
|||||||||.|||.|..|.|||||....|||||||||| |..||||||
RBAM_009940__ 1281 TGTAAAAGAGAATCTGCTTTACGGCCGGCAGGATGCAA---ACGAAGAGG 1327
BSNT_01664___ 1331 --TTCAGCA-AGCCATTGCCGAA----GCACATTTTGAAAAAGATTTGCA 1373
.||.||| .|| ||.||| ||.|||||||||||.|||.|...
RBAM_009940__ 1328 AAATCGGCAGTGC----GCTGAAAGATGCGCATTTTGAAAACGATATCGG 1373
BSNT_01664___ 1374 CATGC-TTCCGTCCGGTCTGGAGACAATGGTCGGTGAAAAAGGCGTGGCA 1422
||||| ||||| .|||.||.|||||..|.|||||.||.||.|||||.||.
RBAM_009940__ 1374 CATGCTTTCCG-ACGGGCTTGAGACGCTTGTCGGCGAGAAGGGCGTAGCG 1422
BSNT_01664___ 1423 CTGTCAGGCGGACAGAAACAAAGAATTTCGATTGCGAGAGCACTCATGGC 1472
||.||.||||||||.||.||..|.||.||.|||||||||||.||..||.|
RBAM_009940__ 1423 CTCTCTGGCGGACAAAAGCAGCGCATCTCAATTGCGAGAGCGCTTTTGAC 1472
BSNT_01664___ 1473 GAATCCGGAAATCTTGATTCTGGATGATTCACTTTCCGCTGTAGATGCCA 1522
..||||.||.||..|.||..|.||||||||.|||||.||.|||||.||.|
RBAM_009940__ 1473 CGATCCTGACATTCTCATATTAGATGATTCGCTTTCTGCCGTAGACGCGA 1522
BSNT_01664___ 1523 AAACAGAGGCTGCAATTATCAAGAACATCAG-AGAAAACCGCAAAGG--A 1569
||||.||.||.||.||.||..|.|.||||.| |.|||||.|| || .
RBAM_009940__ 1523 AAACGGAAGCCGCCATCATTGACAGCATCCGTAAAAAACGGC---GGCAT 1569
BSNT_01664___ 1570 AAAACGACATTTATTTTGACGCACCGATTATCCGCGGTTGAGCACGCTGA 1619
|||||.||..||||....||.|||||..|.||.||.|||||.|||||.||
RBAM_009940__ 1570 AAAACAACGATTATCACCACCCACCGGCTCTCGGCAGTTGAACACGCAGA 1619
BSNT_01664___ 1620 CCTGATCCTTGTGATGGACGGCGGC-----GTCATTGTTGAGAGAGGCAC 1664
.||.||.||.||.|||||.|..||| ||| |||.||||||||
RBAM_009940__ 1620 TCTCATTCTCGTCATGGATGAAGGCCGGGTGTC-----TGAAAGAGGCAC 1664
BSNT_01664___ 1665 GCATCAAGAACTGCTGGCCAATAATGGGTGGTACCGGGAACAATATGAAA 1714
|||.|..||.|||.||||..|.||.||.|||||.||..||||||||||.|
RBAM_009940__ 1665 GCACCGGGAGCTGTTGGCGCAGAACGGCTGGTATCGAAAACAATATGAGA 1714
BSNT_01664___ 1715 GACAGCAGCTGTTCACTGCGGAAGAAGGGGGAGCAGGGGCATGA 1758
|.||||||||||.|.||...|||||||||||..|.||.||||||
RBAM_009940__ 1715 GGCAGCAGCTGTCCTCTCTTGAAGAAGGGGGGACGGGCGCATGA 1758
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