Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01662 and RBAM_009930

See Amino acid alignment / Visit BSNT_01662 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:20
# Commandline: needle
#    -asequence dna-align/BSNT_01662___nhaX.1.9828.seq
#    -bsequence dna-align/RBAM_009930___nhaX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01662___nhaX-RBAM_009930___nhaX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01662___nhaX-RBAM_009930___nhaX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01662___nhaX
# 2: RBAM_009930___nhaX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 581
# Identity:     382/581 (65.7%)
# Similarity:   382/581 (65.7%)
# Gaps:          82/581 (14.1%)
# Score: 1364.5
# 
#
#=======================================

BSNT_01662___      0 --------------------------------------------------      0
                                                                       
RBAM_009930__      1 ATGCAGGTTTTACATTTCTGCCATTCGGGTATTGTAAAACAAACCTTTTT     50

BSNT_01662___      1 ----------GTGAGAAGGATGTTCCATGCTGACCGTATCATTGTTGCGT     40
                               .||||...||||||.||.||.|||||..|.||.|..||.|
RBAM_009930__     51 TACTGAAAGGATGAGGCCGATGTTTCACGCGGACCGGTTGATAGCAGCTT    100

BSNT_01662___     41 TTGACGGAAGTGAAAATAGTAAGAAAGCGCTTCAGACAGCCATTGATCTT     90
                     |||||||||||||..|||||||.||||||||.||.|.||||||.||.|||
RBAM_009930__    101 TTGACGGAAGTGATGATAGTAAAAAAGCGCTCCAAAAAGCCATAGACCTT    150

BSNT_01662___     91 GCTAAAACCGTAAATGCCGCTATTACCGTCGCCCATT--CACATGATATG    138
                     .|.|||||..|..|.||.|.|.|.||.||||..||||  ||||    |||
RBAM_009930__    151 TCAAAAACATTTCACGCGGATTTAACGGTCGTACATTCCCACA----ATG    196

BSNT_01662___    139 --AAAGACAATCAGACCGTCATCGACCCGCCCAGACCCGCAGCTGAGGCA    186
                       |||||.|..|.|||..|..|.||.||.||.||.||.|.|||.|..|||
RBAM_009930__    197 CAAAAGATACCCGGACGATTGTTGATCCCCCGAGGCCGGGAGCCGGAGCA    246

BSNT_01662___    187 AGCTATATCAGCGGAGGCATGACAAGTGTTCCTGATCCGCT---GATATC    233
                     |..||||||.||||.||.||..||||.||||||||.|||||   ||   |
RBAM_009930__    247 ACGTATATCGGCGGCGGGATTGCAAGCGTTCCTGACCCGCTCCAGA---C    293

BSNT_01662___    234 GGATGTAACATCACCTGAGCCAATGATCTATGAAGACCGTACGGAAGAAG    283
                     |||...||..||.|||||.||.|||||.|||||||||||||||||||||.
RBAM_009930__    294 GGAAAGAATCTCCCCTGATCCGATGATTTATGAAGACCGTACGGAAGAAA    343

BSNT_01662___    284 TCATCGCCGAAGCAAGAATGATGCTGAATGAACAGCAGGCAGAT----GG    329
                     ||.|.||.|||||.||||||.||    ||||||..|||.|||||    ||
RBAM_009930__    344 TCGTTGCGGAAGCGAGAATGCTG----ATGAACGACAGCCAGATTGACGG    389

BSNT_01662___    330 AGATATCGATATATTAGAAGGCGATCCGGCTGAATCAATTATCGAGCATG    379
                     .||||||||.||.||||||||.|||||.|||||..|.|||||||||||||
RBAM_009930__    390 GGATATCGACATTTTAGAAGGTGATCCCGCTGATGCCATTATCGAGCATG    439

BSNT_01662___    380 CAAACCGCATTTCTGCCGATATGATCGTAACCGGAAGCAGAGACCAAAAC    429
                     |..||||.||.||.||.|||.|||||||.|..||.|||.|.|||||.|||
RBAM_009930__    440 CCGACCGTATATCGGCGGATTTGATCGTCATGGGGAGCCGGGACCAGAAC    489

BSNT_01662___    430 AGGCTGAAAAAGCTAATATTCGGAAGTGTAAGTGAAAAGCTTTCAGCGAA    479
                     |||||||||||.||..||||||||||.||.||||||||.||.|||.||||
RBAM_009930__    490 AGGCTGAAAAAACTTTTATTCGGAAGCGTCAGTGAAAAACTGTCATCGAA    539

BSNT_01662___    480 ATCGGATATACCCGTCCTGATTGTAAAGTGA    510
                     |||.|||||.|||||.|||||.|||||.|.|
RBAM_009930__    540 ATCCGATATTCCCGTGCTGATCGTAAAATAA    570


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.