Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01655 and RBAM_009890

See Amino acid alignment / Visit BSNT_01655 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:19
# Commandline: needle
#    -asequence dna-align/BSNT_01655___yheN.1.9828.seq
#    -bsequence dna-align/RBAM_009890___yheN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01655___yheN-RBAM_009890___yheN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01655___yheN-RBAM_009890___yheN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01655___yheN
# 2: RBAM_009890___yheN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 891
# Identity:     622/891 (69.8%)
# Similarity:   622/891 (69.8%)
# Gaps:          84/891 ( 9.4%)
# Score: 1957.5
# 
#
#=======================================

BSNT_01655___      1 ATGCGACAA-ACGAGAGGAGAAGCTTCTCCTTCTGCAG-TTTCGCTTGCT     48
                     ||||| ||| ||.|.||.||..|||||.|||||| |.| ||||..|.|||
RBAM_009890__      1 ATGCG-CAACACAAAAGAAGGTGCTTCCCCTTCT-CTGTTTTCATTGGCT     48

BSNT_01655___     49 TTTAAATTTGCAAGTTTAGCAGTTTTATGTGTGCTGCTTTTGCTTATGGT     98
                     ||||||.||.|.||||||||||||||.||.|..||||||.||.|.||.||
RBAM_009890__     49 TTTAAACTTACGAGTTTAGCAGTTTTGTGCGGACTGCTTCTGGTAATCGT     98

BSNT_01655___     99 GATTTTGGGTTATTCCAACAGTT-------CAACGAAAGCAAAGGAAGTC    141
                     .||..||||.||||||    |.|       |||  |||.|||| .|.|||
RBAM_009890__     99 CATAATGGGATATTCC----GCTTCCGCCGCAA--AAAACAAA-CAGGTC    141

BSNT_01655___    142 ACTGTCACAACTAACGGACAGCTTCGAGATGAGAAG--GAAAGCCTTAAG    189
                     ||.||.||..|.|||||.||||||||.|||  ||||  ||||||||...|
RBAM_009890__    142 ACCGTGACCGCAAACGGGCAGCTTCGGGAT--GAAGCAGAAAGCCTGCGG    189

BSNT_01655___    190 CTGAAAAACGACTCCCCCG--ATCTGCTGATAAAACATCTGCAGACAAAG    237
                     ||||||||.||.||.||||  ||||  |.||.||||||.||||||.|.||
RBAM_009890__    190 CTGAAAAATGATTCTCCCGACATCT--TAATGAAACATTTGCAGAGAGAG    237

BSNT_01655___    238 CAGGA--CATGGGAGATAAAACGGTTTACTTAACCTTCGATGACGGCCCG    285
                     |..||  || |||| |.||||||||.||.|||||||||||.|||||.|||
RBAM_009890__    238 CGTGACCCA-GGGA-AAAAAACGGTATATTTAACCTTCGACGACGGGCCG    285

BSNT_01655___    286 TCAGCCTTTAC--AACCCGCTTGCTCGATGTACTGA----AAA--GCGCT    327
                     ||..|.|.|||  || |.|| ||.|..|||||.|||    |||  |||| 
RBAM_009890__    286 TCTCCATATACTGAA-CAGC-TGTTGAATGTATTGAAGGCAAATGGCGC-    332

BSNT_01655___    328 GATGTAAAAGCGACGTTTTTTATGCTGTCACCGCGGATGAACGAATTCAA    377
                          |||.||.||.|||||||||||...||||||||||||.|..|..||
RBAM_009890__    333 -----AAAGGCCACTTTTTTTATGCTTGAACCGCGGATGAAAGCCTATAA    377

BSNT_01655___    378 GCAGGCTGTGAAAAGAGCAGAA-AAGGAAGGCCACGCACTCGGTTTACAT    426
                     |||..|.|||.||||||| ||| .|||||||...|||.|||||..|.||.
RBAM_009890__    378 GCATTCCGTGCAAAGAGC-GAAGCAGGAAGGAATCGCGCTCGGCCTGCAC    426

BSNT_01655___    427 GGCGTTACCCACAATAA-CAGATTGTTCTATCAAACACCTACATCTCCGC    475
                     |||||.||.|||.|||| || ..||||.|||||||||||.|||||.||||
RBAM_009890__    427 GGCGTGACGCACGATAATCA-CCTGTTTTATCAAACACCGACATCACCGC    475

BSNT_01655___    476 TAAAAGAAATGCAGGAGGCGCGTGACACGCTGCAGGACATTACAGG-TTA    524
                     |.||.|||||||||.|||..||.||.||.||..|||..||.||.|| .||
RBAM_009890__    476 TGAACGAAATGCAGCAGGGACGCGATACACTCGAGGCAATCACCGGAGTA    525

BSNT_01655___    525 TAAAACCGCTCTTGTCAGAACGCCCTACGGAAGCAAGCCGTCACTAAC--    572
                      |||||.|.||||.||.|.|||||.|||||.||.||.||||||.|.||  
RBAM_009890__    526 -AAAACGGATCTTATCCGCACGCCTTACGGCAGTAAACCGTCATTGACGG    574

BSNT_01655___    573 ---CCCCTCACAAATCCGCAATCTTGAGAAAGACGGTTTTGTGTACTGGG    619
                        ||     ||.||....|||||.||.||||.|||.||.||||||||||
RBAM_009890__    575 ATGCC-----CAGATTAAGAATCTCGAAAAAGGCGGATTCGTGTACTGGG    619

BSNT_01655___    620 ATTGGACGATTGACAGCATG--GACTGGAAATACCGAAATTCAAAGTATG    667
                     |.||||||||.|||||  ||  ||||||||.|||..|||..||..|||.|
RBAM_009890__    620 ACTGGACGATAGACAG--TGAAGACTGGAAGTACAAAAACACACGGTACG    667

BSNT_01655___    668 TGACGGCCGTGTTAGAGCAGCTTGAAAATATGGAACAAAGC--TCTT---    712
                     ||.|||..||.||..|.|||||.|.|.||.|||   |||||  ||.|   
RBAM_009890__    668 TGCCGGAAGTATTGAATCAGCTCGCATATTTGG---AAAGCGTTCATACG    714

BSNT_01655___    713 --CAGGCCGCCCGAATGTGATTCTCATGCATGATCTTCCCGCCACCGTAA    760
                       ||||||||    ||||.|||.|.|||||.|||||.||.||.||.||..
RBAM_009890__    715 AGCAGGCCGC----ATGTCATTTTAATGCACGATCTGCCTGCGACGGTGT    760

BSNT_01655___    761 ACGCGCTGCCGGTACTAATCAATAAATTAAAAGAAAAAGGCTATTCCTTC    810
                     ||||..|||||...||.|||.|.|||.|.||||...|.|||||.|||||.
RBAM_009890__    761 ACGCTTTGCCGAGCCTGATCCAAAAACTGAAAGCCCAGGGCTACTCCTTT    810

BSNT_01655___    811 GGAGTGTTAGA-GGA-CACAATGGTTCCTGTTCATGAATAA    849
                     |..|| ||.|| ||| || ||||.||||.||.|||||||||
RBAM_009890__    811 GATGT-TTTGACGGATCA-AATGATTCCCGTCCATGAATAA    849


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01655 and RBAM_009890

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
