Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01653 and RBAM_009870
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:19
# Commandline: needle
# -asequence dna-align/BSNT_01653___yhdY.1.9828.seq
# -bsequence dna-align/RBAM_009870___yhdY.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01653___yhdY-RBAM_009870___yhdY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01653___yhdY-RBAM_009870___yhdY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01653___yhdY
# 2: RBAM_009870___yhdY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1145
# Identity: 835/1145 (72.9%)
# Similarity: 835/1145 (72.9%)
# Gaps: 58/1145 ( 5.1%)
# Score: 2902.0
#
#
#=======================================
BSNT_01653___ 1 ---ATGCCGGATTATCTGCAGCAGTATTTTACGCTTGATAACATCATACA 47
|||.|..|.|.||.| ||| |.||||||.|||||..|.||..|.||
RBAM_009870__ 1 ATGATGACACAATTTCAG-AGC--TTTTTTACTCTTGACCATATTTTGCA 47
BSNT_01653___ 48 AATCGGCATCAGCTTGGCGATTTT-GCTGGTGTTTCTTATACTGAGAAAA 96
.|||.|.||||||.|.|..||||| || ||..|||||..|..||||||||
RBAM_009870__ 48 GATCAGTATCAGCATCGGAATTTTAGC-GGCTTTTCTCGTTTTGAGAAAA 96
BSNT_01653___ 97 -TTATTCACAAGATATTTCTTTAACTTGCTTTTTAATTTGACAAACCGGC 145
|..||..||| |||.||.|||.|..|..|||..||.|||.|.|||..||
RBAM_009870__ 97 CTGTTTGTCAA-ATACTTTTTTCAGCTCATTTACAAATTGGCGAACAAGC 145
BSNT_01653___ 146 CGAAAACAGAAATTTTTAAACAGGTGGTTCTGGCGTTTGATAAGCCGGCC 195
|||||||.||.||.||.||||||.|.|...|.||||||||.|||||||||
RBAM_009870__ 146 CGAAAACCGACATATTCAAACAGATTGCCGTAGCGTTTGACAAGCCGGCC 195
BSNT_01653___ 196 AGATGGTTTTTTGTTGCCCTTGGGCTGTTTTTAGCGATCCGGTATTCACC 245
|||||||||||.||.||.||.||.||.|||||.|||||...||||||.||
RBAM_009870__ 196 AGATGGTTTTTCGTGGCGCTGGGTCTATTTTTGGCGATTGAGTATTCGCC 245
BSNT_01653___ 246 GTTTTTAGATGAGCAAATACCGGTCA---TCAGCAAAATATACCGCTCAC 292
|||||||||.|.|||.|| ||.|| |||..|||.|.||||||||.|
RBAM_009870__ 246 GTTTTTAGACGGGCAGAT---GGACATTGTCAAAAAATTGTACCGCTCTC 292
BSNT_01653___ 293 TGATTGTGGCGCTCTTGTGCTGGGGTCTTTGTAATTTGACCGCAACATCG 342
||||.||.|||||..|...||||||.|||||.|||.||||..|..|.||.
RBAM_009870__ 293 TGATCGTTGCGCTGATCGCCTGGGGGCTTTGCAATCTGACATCGGCGTCT 342
BSNT_01653___ 343 TCGTTTATCTTCCATAAGGTGAATCAGCGCTTCGAGCTTGACATGGATGA 392
||||||.|.||.|||||.||.|||||||||||.||||||||.||||||||
RBAM_009870__ 343 TCGTTTTTATTTCATAAAGTCAATCAGCGCTTTGAGCTTGATATGGATGA 392
BSNT_01653___ 393 CATTCTGGCCCCGTTTTTATCCAAATTGCTCCGTTTTGTGATCATTGCGC 442
||||.||||.||||||||||||||..||||.||.|||||.||..|.||||
RBAM_009870__ 393 CATTTTGGCGCCGTTTTTATCCAAGGTGCTGCGCTTTGTCATTCTCGCGC 442
BSNT_01653___ 443 TCAGTGTCAGTGTGATCGCTCAGGAATTCAATTATGATGTCAACGGATTT 492
||||.||||||||||||||.||||||||||||||||||||.|||||.||.
RBAM_009870__ 443 TCAGCGTCAGTGTGATCGCGCAGGAATTCAATTATGATGTAAACGGGTTC 492
BSNT_01653___ 493 GTAGCGGGCCTTGGTCTTGGCGGACTGGCTTTTGCGCTTGCCGCGAAGGA 542
||.||.||.||.||.|||||||||.||||.||.||||||||.||.||.||
RBAM_009870__ 493 GTGGCCGGACTCGGACTTGGCGGATTGGCCTTCGCGCTTGCGGCTAAAGA 542
BSNT_01653___ 543 TACCATCAGCAACTTCTTTGGCGGTATTATCATTATTACTGAAAAGCCGT 592
|||.|||||.||.||.||.|||||.||||||||.|||||.||||||||||
RBAM_009870__ 543 TACGATCAGTAATTTTTTCGGCGGCATTATCATCATTACGGAAAAGCCGT 592
BSNT_01653___ 593 TTACAATTGGTGACTGGGTGGAGACGTCGACAGTAACAGGATCAGTCGAG 642
||||.||.||.||||||||.||||||||..|.|||||.||....||.||.
RBAM_009870__ 593 TTACGATCGGCGACTGGGTCGAGACGTCATCTGTAACGGGGGGCGTTGAA 642
BSNT_01653___ 643 GATATTACCTTTAGGAGCACGAGATTCAGAACAGCACAGGGGGCGCTTGT 692
|||||.||.||..|.|||||.||.|||.|.||.||.||||||||||||||
RBAM_009870__ 643 GATATCACATTCCGAAGCACAAGGTTCCGCACGGCGCAGGGGGCGCTTGT 692
BSNT_01653___ 693 AACGGTCCCGAACTCTACGCTGTCGATGGAAGCGATCACGAACTGGACAA 742
.||.||.||.||.||.||||||||.||||||||.|||||.||||||||.|
RBAM_009870__ 693 TACCGTGCCCAATTCAACGCTGTCCATGGAAGCCATCACAAACTGGACGA 742
BSNT_01653___ 743 GAATGACTAAACGCCAGATTACGTTTTCCATCCATGTGTCCTACGCTACG 792
|.|||||.||.||||||.|.|||||||||.|.|.|||.||.||.||.|||
RBAM_009870__ 743 GGATGACGAAGCGCCAGGTCACGTTTTCCGTTCGTGTTTCTTATGCGACG 792
BSNT_01653___ 793 CCGATTGAGAACCTT--GAACGCTCCATTCATTC---TCTCAGAACAATG 837
|||||| ||.|.|| ||.||.|.|| ||| | .||||||..||||
RBAM_009870__ 793 CCGATT--GATCGTTTAGAGCGGTGCA-TCA--CAAGGCTCAGAGAAATG 837
BSNT_01653___ 838 C-TCTTAGAGCATGAGGGCGTTGATAATGAAACAATCATGGTCAACTTTG 886
| ||.| ||.|||||.|||||..||.||||.||.||.|||||.|||||||
RBAM_009870__ 838 CTTCGT-GAACATGAAGGCGTGCATGATGATACGATTATGGTTAACTTTG 886
BSNT_01653___ 887 ATACGTTTGCCGACAGCTACTACAATTTATTTTTTAACTTCTATACAAAA 936
|...||||||.||||||||.||.|||.|.|||||.|||||.||.|||||.
RBAM_009870__ 887 ACGTGTTTGCGGACAGCTATTATAATCTGTTTTTCAACTTTTACACAAAG 936
BSNT_01653___ 937 ACGACAGTTTGGGCTGAAAACCTTAATATTAGA-------GAGGATATCA 979
||.|..||.|||||.||||.| ||.|| .|||||||||
RBAM_009870__ 937 ACCATCGTCTGGGCGGAAAGC-------TTGGACGTGCGGCAGGATATCA 979
BSNT_01653___ 980 ACTATAAAATTATTGAGATTTTAGGTGCAGAAGGTGTCCAGTTTGCATAT 1029
||......||||||||.|||||.|.||..|||||.||..|.||.||.|||
RBAM_009870__ 980 ACCGCCGGATTATTGATATTTTTGCTGAGGAAGGCGTGGAATTCGCCTAT 1029
BSNT_01653___ 1030 CCCGGCCA-AATGGTTGTT-GTCAAGC--AAAAG-CACGAAAGCGACCCA 1074
||.||||| |||| |.|| ||.||.| ||||| ||||| .||.||.
RBAM_009870__ 1030 CCGGGCCAGAATG--TATTCGTAAAACAGAAAAGCCACGA---TGATCCG 1074
BSNT_01653___ 1075 TTCCAGGTGA---ATCTAAATAAAGAGGAAAAGGAACGGGCTTAA 1116
.|.||.|||| ||| ||...|..|||||.||||||||.|||
RBAM_009870__ 1075 GTTCATGTGAAGGATC---ATTCCGGAGAAAAAGAACGGGCATAA 1116
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