Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01646 and RBAM_009820
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:19
# Commandline: needle
# -asequence dna-align/BSNT_01646___yhdT.1.9828.seq
# -bsequence dna-align/RBAM_009820___yhdT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01646___yhdT-RBAM_009820___yhdT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01646___yhdT-RBAM_009820___yhdT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01646___yhdT
# 2: RBAM_009820___yhdT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1440
# Identity: 1079/1440 (74.9%)
# Similarity: 1079/1440 (74.9%)
# Gaps: 105/1440 ( 7.3%)
# Score: 4071.5
#
#
#=======================================
BSNT_01646___ 1 ATGGACGATATTGACAGTCTGATTTTAATTGGCGTGCTCATTGCTTTAAC 50
||||||||||||||||||.||||||||||.||.|||||||||||.|||||
RBAM_009820__ 1 ATGGACGATATTGACAGTTTGATTTTAATCGGTGTGCTCATTGCGTTAAC 50
BSNT_01646___ 51 CGCGTTTTTCGTTGCAAGCGAGTTTGCGATTGTTAGAGTGAGGAGATCCA 100
.||.||||||||.||.||.||.||||||||.||.||||||||.|||||||
RBAM_009820__ 51 GGCATTTTTCGTGGCGAGTGAATTTGCGATCGTCAGAGTGAGAAGATCCA 100
BSNT_01646___ 101 GAATAGATCAGCTTATCACAGAAGGAAACAAACGGGCGATACTCGCAAGG 150
||||.||||||||.||..|||||||.||||.|||||||.|.|||||||.|
RBAM_009820__ 101 GAATCGATCAGCTCATTTCAGAAGGGAACAGACGGGCGGTGCTCGCAAAG 150
BSNT_01646___ 151 CGTGTCATTACAGATTTGGATGAATATTTATCCGCATCCCAGCTGGGCAT 200
|||.|||||||.|||.|.|||||.|||||||||||.||.|||||.|||||
RBAM_009820__ 151 CGTATCATTACGGATCTTGATGAGTATTTATCCGCCTCGCAGCTTGGCAT 200
BSNT_01646___ 201 TACATTGACATCAATCGGGCTTGGCGTACTGGGTGAGCCGGCCTTTGAAC 250
||||.|.|||||.||||||||.|||||||||||.|||||.||.|||||||
RBAM_009820__ 201 TACACTCACATCCATCGGGCTCGGCGTACTGGGAGAGCCTGCATTTGAAC 250
BSNT_01646___ 251 GGCTGCTGCATCCACTGTTTGAACCGCTCGGCTTGCCAGACT--CGGTTT 298
||.||||.|||||..||||| |..|||.|| .|.|| |||.||
RBAM_009820__ 251 GGATGCTTCATCCTGTGTTT------CAGGGCATG--GGGCTGCCGGATT 292
BSNT_01646___ 299 CACATGC--AGCCT-------CTTTTGCAGTCGCGTACGGCTTGATCACG 339
| ||| |||.| |||||||.|..||||||||..||||.|||
RBAM_009820__ 293 C---TGCTGAGCATGTGATTGCTTTTGCTGCGGCGTACGGGCTGATTACG 339
BSNT_01646___ 340 TTCCTGCACGTTGTTGTAGGTGAACTGGCCCCGAAAACGGTCGCGATTCA 389
||.|||||.||.||.||.|||||.||.||.||.||||||||.||||||||
RBAM_009820__ 340 TTTCTGCATGTCGTCGTCGGTGAGCTTGCGCCTAAAACGGTTGCGATTCA 389
BSNT_01646___ 390 AAAGGCAGAACAGCTGACTTTACTGATAGCGGGCCCTTTGCGTTTATTTT 439
|||.||.|||.|||||||.|||..|||.||.||.||..|.||.|||||||
RBAM_009820__ 390 AAAAGCGGAAAAGCTGACGTTATGGATTGCCGGACCGCTTCGGTTATTTT 439
BSNT_01646___ 440 ATTTGCTCCTGTTTCCGTTTATTTGGATCCTCAATGGATCGGCGCGGCTT 489
|..||.||.||||.||||||||||||.|.||.||.||.||.|||.|..||
RBAM_009820__ 440 ACGTGTTCATGTTCCCGTTTATTTGGGTGCTGAACGGCTCCGCGAGAATT 489
BSNT_01646___ 490 TTATGCGGGATGTTCGGTTTGAAGCCTGCGTCAGAACATGATGGTTCCCA 539
.|...|||..||..|||.||.|||||.||.||.||.|||||.||.|||||
RBAM_009820__ 490 CTGACCGGTTTGGCCGGATTAAAGCCGGCATCTGAGCATGAAGGCTCCCA 539
BSNT_01646___ 540 TTCTGAGGAAGAACTCAGGATGCTGTTATCTGAGAGTTTAAAAAACGGAG 589
.|||||.|||||.||..||||.|||.|.||.||.||||||||||||||||
RBAM_009820__ 540 CTCTGAAGAAGAGCTGCGGATCCTGCTGTCAGAAAGTTTAAAAAACGGAG 589
BSNT_01646___ 590 AGATTAATCCGTCTGAATATAAATATGTGAATAAGATTTTTGAATTTGAT 639
|.||.||||||||||||||||.||.|||||||||.||||||||.||||||
RBAM_009820__ 590 AAATCAATCCGTCTGAATATACATTTGTGAATAAAATTTTTGATTTTGAT 639
BSNT_01646___ 640 AATCGGATCGCCAAAGAAATTATGATACCGCGGAAGGAAATGGCTGCTGT 689
||||||||||||||.|||||.|||||.|||.|.||.|||||.||.|||||
RBAM_009820__ 640 AATCGGATCGCCAAGGAAATCATGATCCCGAGAAAAGAAATCGCGGCTGT 689
BSNT_01646___ 690 GTCAACTGAGAT-GACGATGGCCGAGATGCTTGAAGTCATGCTGAAGGAA 738
.||.|||||.|| |||| ||.|.||.||||||||..|.||||||||.||.
RBAM_009820__ 690 TTCCACTGATATGGACG-TGCCGGAAATGCTTGATATGATGCTGAAAGAC 738
BSNT_01646___ 739 AAATACACGCGCTGGCCAGTCACAGATGGAGACAAAGACAGTGTGATCGG 788
|||||.|||||||||||.||.||.||.||.||||||||||||||.|||||
RBAM_009820__ 739 AAATATACGCGCTGGCCCGTAACGGACGGGGACAAAGACAGTGTCATCGG 788
BSNT_01646___ 789 TTTGGTCAATACGAAGCATTTGTTTTCTGATTTGCTGTTTATGACAGAAG 838
..||.||||||||||||||.|.|||||.|||.||||||||||||||||||
RBAM_009820__ 789 CATGATCAATACGAAGCATCTCTTTTCAGATCTGCTGTTTATGACAGAAG 838
BSNT_01646___ 839 AAGAACGAATGAAGATGACG-ATCCATC----CGTATGTGAGGCCGGTCA 883
|.||| .|||..||.| ||||||| |.||.||..|.|||||.|
RBAM_009820__ 839 ATGAA-----AAAGCGGAAGTATCCATCACGTCATACGTCCGCCCGGTGA 883
BSNT_01646___ 884 TCGAAGTGATTGAAACGATCCCGGTTCATGACTTGCTGATTAAAATGCAG 933
|.|||||.||.||.|||||||||.|.||.|||.|||||||.|||||||||
RBAM_009820__ 884 TTGAAGTCATCGAGACGATCCCGATACACGACCTGCTGATAAAAATGCAG 933
BSNT_01646___ 934 CGCGAGCGCATTCATATGGCTATATTGTCGGATGAATACGGAGGAACCTC 983
.|.||.||.||||||.||||.||||||||.|||||||||||.|||||.||
RBAM_009820__ 934 AGAGAACGGATTCATTTGGCGATATTGTCTGATGAATACGGCGGAACGTC 983
BSNT_01646___ 984 GGGACTTGTGACGACAGAGGATATTCTTGAGGAAATTGTCGGAGAGATCA 1033
.||.|||||||||||.||.||.||.|||||.|||||.|||||.||.||||
RBAM_009820__ 984 CGGTCTTGTGACGACCGAAGACATCCTTGAAGAAATCGTCGGCGATATCA 1033
BSNT_01646___ 1034 GAGATGAATTTGATGAAGATGAACAGCCGCTGATCCAAAAGCTTGGCGAC 1083
||||.|||||||||||.||.||||||||||.|||.||||||||...|||.
RBAM_009820__ 1034 GAGACGAATTTGATGAGGACGAACAGCCGCAGATTCAAAAGCTGTCCGAA 1083
BSNT_01646___ 1084 GGCCATTATGTGATGGATGGAAAGGTTCGGATCGATCAGGTGAA-CAGCC 1132
.|||||||||||.||||.||||||||||||||.||||||||||| || .|
RBAM_009820__ 1084 CGCCATTATGTGCTGGACGGAAAGGTTCGGATTGATCAGGTGAATCA-TC 1132
BSNT_01646___ 1133 TTCTTGGCGCATCGATTCAAGAAGACGTCGATACGATCGGCGG------G 1176
||||.||||||..||||.||||.||.|||||.||||||||||| |
RBAM_009820__ 1133 TTCTCGGCGCAGGGATTGAAGAGGAAGTCGACACGATCGGCGGTCTTGTG 1182
BSNT_01646___ 1177 CTGATATTAAAAGAAAACATCGATATTGA------GGCTGGTGAATCCAT 1220
||| |||.|.| ||||||| .||.|||||.||.||
RBAM_009820__ 1183 CTG-----AAACGGA-------ATATTGACATCTGTGCGGGTGAGTCGAT 1220
BSNT_01646___ 1221 TCGCATCGG-------------TTCATATACGATAAAGGTGCTGAAGATG 1257
.|..||.|| .|||||| || ||| |||
RBAM_009820__ 1221 ACAAATAGGGGGATACACTGCCCTCATAT----TA--------GAA-ATG 1257
BSNT_01646___ 1258 GACGGCCGATTAATCAAGCAAATCGATATAAAAGAAGAA----GCCAGCA 1303
||||||||.||.||.||.||..|.||..|.||||||||| ||| ||
RBAM_009820__ 1258 GACGGCCGGTTTATTAAACAGCTTGAACTCAAAGAAGAACAGGGCC-GC- 1305
BSNT_01646___ 1304 ACACAACCGG--GATTACGGCGC-----ACCACAAGCTGCCGCTGCCTGA 1346
|||| |.|.|.||..| |||.|.|||||||..|||||||
RBAM_009820__ 1306 ------CCGGGCGGTCAGGGTACAATAAACCGCCAGCTGCCCGTGCCTGA 1349
BSNT_01646___ 1347 GCCTGTGATGCTGAACAGTGCAACCTTGAGCGAGAAATAA 1386
..|.||.|||||..|.|..||||||||||||||.||||||
RBAM_009820__ 1350 AACGGTCATGCTTCATAACGCAACCTTGAGCGAAAAATAA 1389
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