Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01641 and RBAM_009780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:18
# Commandline: needle
# -asequence dna-align/BSNT_01641___yhdP.1.9828.seq
# -bsequence dna-align/RBAM_009780___yhdP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01641___yhdP-RBAM_009780___yhdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01641___yhdP-RBAM_009780___yhdP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01641___yhdP
# 2: RBAM_009780___yhdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1343
# Identity: 1108/1343 (82.5%)
# Similarity: 1108/1343 (82.5%)
# Gaps: 16/1343 ( 1.2%)
# Score: 4618.0
#
#
#=======================================
BSNT_01641___ 1 TTGGACATAGTGAATTTGATTTTAGTTGCTGTTTTAATCGCCCTGACGGC 50
||||||||.|||||||||||||||||.||.|||||||||||.||||||||
RBAM_009780__ 1 TTGGACATTGTGAATTTGATTTTAGTCGCGGTTTTAATCGCGCTGACGGC 50
BSNT_01641___ 51 ATTTTTCGTGGCATCTGAGTTTGCCATTATCAGAATCAGAGGCTCACGGA 100
|||||||||.||||||||||||||.||.|||||||||||||||||||||.
RBAM_009780__ 51 ATTTTTCGTAGCATCTGAGTTTGCGATAATCAGAATCAGAGGCTCACGGG 100
BSNT_01641___ 101 TCGATCAGCTGATCGCGGAAGGAAATAAAGCAGCAATAGCCGTAAAAAAA 150
|.||.|||||.||.||.||||||||||||||.|||||.|..||.||||||
RBAM_009780__ 101 TTGACCAGCTTATAGCAGAAGGAAATAAAGCCGCAATCGGTGTCAAAAAA 150
BSNT_01641___ 151 GTGACCACGCATCTTGATGAATATTTATCTGCGTGTCAGCTCGGAATTAC 200
||||||||||||.|.|||||.||||||||.|||||.||||||||.||.||
RBAM_009780__ 151 GTGACCACGCATTTAGATGAGTATTTATCGGCGTGCCAGCTCGGCATAAC 200
BSNT_01641___ 201 ATTGACTTCCATCGGATTAGGGGTTTTAGGTGAATCAACGATCGAAAGGC 250
|||||||||||||||..|.||.||.|||||.|||||||||||.|||.|..
RBAM_009780__ 201 ATTGACTTCCATCGGTCTTGGTGTCTTAGGCGAATCAACGATTGAACGCT 250
BSNT_01641___ 251 TGCTTCACCCGCTTTTCGTCCAA--ATGAACGTTCCAGGTTCCCTTTCAC 298
|||||||.||||||||| .||| ||.|||||.|||.|.||..|.||.|
RBAM_009780__ 251 TGCTTCATCCGCTTTTC--ACAAAGATAAACGTACCAAGCTCATTATCGC 298
BSNT_01641___ 299 ATGTCATATCGTTTATTTTTGCGTATGCCATTATCACGTTCTTACACGTT 348
||.|.||.||.||||||.|.||.|||||.||.||.||.|||||||||||.
RBAM_009780__ 299 ATATTATTTCATTTATTCTCGCCTATGCGATCATTACATTCTTACACGTG 348
BSNT_01641___ 349 GTTGTCGGAGAACTTGCACCTAAGACAGTCGCTATCCAAAAGGCGGAAGC 398
||.||.|||||..|.||.||.||.||||||||.|||||.||.||||||||
RBAM_009780__ 349 GTCGTGGGAGAGTTGGCGCCGAAAACAGTCGCCATCCAGAAAGCGGAAGC 398
BSNT_01641___ 399 AGTGTCTATGCTGTTTGCGAAACCGCTGATTTGGTTTTACCGCATCGCGT 448
.||.||.|||||||||.||||||||||.||||||||||||||||||..||
RBAM_009780__ 399 CGTTTCAATGCTGTTTTCGAAACCGCTCATTTGGTTTTACCGCATCATGT 448
BSNT_01641___ 449 TCCCATTCATTTGGCTTTTGAACAATTCCGCACGGTTATTGACCAAAGCA 498
||||.||.||.||||||.|||||||.|||||.||..|.||.||.||..|.
RBAM_009780__ 449 TCCCGTTTATCTGGCTTCTGAACAACTCCGCCCGTCTTTTAACGAAGACG 498
BSNT_01641___ 499 TTTGGCCTGGAGACCGTTTCAGAAAACGAACTGGCTCACTCAGAAGAAGA 548
||.||.||||||||.||.||.|||||.||.||.||.|||||.||||||||
RBAM_009780__ 499 TTCGGTCTGGAGACGGTGTCTGAAAATGAGCTTGCCCACTCTGAAGAAGA 548
BSNT_01641___ 549 GCTGCGAATCATTTTGTCTGAAAGCTATAAAAGCGGTGAAATCAACCAAT 598
||||||.||||||||.||.|||||||||||||||||||||||||||||.|
RBAM_009780__ 549 GCTGCGCATCATTTTATCGGAAAGCTATAAAAGCGGTGAAATCAACCAGT 598
BSNT_01641___ 599 CAGAGTTTAAATATGTGAATAAAATCTTTGAATTTGACGACAGGCTCGCG 648
|.||.||||||||.|||||.|||||||||||||||||||||||.||.||.
RBAM_009780__ 599 CTGAATTTAAATACGTGAACAAAATCTTTGAATTTGACGACAGACTTGCA 648
BSNT_01641___ 649 AAAGAAATTATGATTCCGCGGACCGAAATTGTCAGCCTTCCGCATGATAT 698
||||||||.|||||||||||.||.|||||.|||||.||.|||||||||||
RBAM_009780__ 649 AAAGAAATCATGATTCCGCGTACGGAAATCGTCAGTCTGCCGCATGATAT 698
BSNT_01641___ 699 CAAGATTTCTGAAATGATGGACATCATTCAGATTGAAAAATATACCCGCT 748
|||.||||||||||||||||||||||||||||||||||||||||||||.|
RBAM_009780__ 699 CAAAATTTCTGAAATGATGGACATCATTCAGATTGAAAAATATACCCGGT 748
BSNT_01641___ 749 ACCCTGTGGAAGAGGGCGATAAAGATAACATTATCGGGGTTATTAACATT 798
|||||||.||||||||.||.||||||||.||||||||.||||||||||||
RBAM_009780__ 749 ACCCTGTCGAAGAGGGTGACAAAGATAATATTATCGGCGTTATTAACATT 798
BSNT_01641___ 799 AAAGAAGTGCTGACAGCCTGCATAAGCGGTGAGGTATCTGTTGATTCCAC 848
||||||||||||||.||||||||.|||||.||.|||||.||.||.||..|
RBAM_009780__ 799 AAAGAAGTGCTGACCGCCTGCATCAGCGGCGAAGTATCAGTCGACTCGCC 848
BSNT_01641___ 849 CATTTCTCAATTCGTCAACCCGATCATTCATGTCATTGAATCTGCGCCGA 898
.|||.|..|.||.|||||.||||||||.|||||.|||||.||.||.||||
RBAM_009780__ 849 GATTACCGATTTTGTCAATCCGATCATCCATGTGATTGAGTCGGCACCGA 898
BSNT_01641___ 899 TCCAAGACCTGCTTGTCAAAATGCAAAAAGAGAGGGTCCACATGGCCATT 948
|.||.||.||||||||.||||||||.||.||..||||.||.|||||.|||
RBAM_009780__ 899 TTCACGATCTGCTTGTAAAAATGCAGAAGGAACGGGTTCATATGGCGATT 948
BSNT_01641___ 949 TTGTCTGATGAATACGGCGGTACTGCCGGGCTTGTGACGGTTGAGGACAT 998
.||||.||||||||||||||.||.||.||||||||.||.|||||.|||||
RBAM_009780__ 949 CTGTCGGATGAATACGGCGGAACCGCGGGGCTTGTCACCGTTGAAGACAT 998
BSNT_01641___ 999 CATTGAGGAAATTGTCGGTGAAATCCGCGACGAATTTGATATTGATGAAA 1048
.|||||.|||||.|||||.||||||||.||.|||||||||||.|||||||
RBAM_009780__ 999 TATTGAAGAAATCGTCGGGGAAATCCGTGATGAATTTGATATCGATGAAA 1048
BSNT_01641___ 1049 TTAGCGAAATCCGCAAAATCGGCGAAGGCCATTATATTCTTGACGGAAAA 1098
|.|.|||||||||||||.|||||||.||||||||.||.||||||||.||.
RBAM_009780__ 1049 TCAACGAAATCCGCAAACTCGGCGACGGCCATTACATGCTTGACGGCAAG 1098
BSNT_01641___ 1099 GTGTTAATTGACCAAGTAAACGACCTGCTAGGCATTCATTTAGAGAACGA 1148
||..|.|||||.|||||.|||||.||.||.|||||.||||||||.||.||
RBAM_009780__ 1099 GTCCTGATTGATCAAGTGAACGAACTCCTCGGCATCCATTTAGAAAATGA 1148
BSNT_01641___ 1149 AGAAGTCGACACAATCGGCGGCTGGTTCCTTACTCAAAAATACGATGTTG 1198
.||.||||||||.||.|||||||||||||||||.||.||||||||.||.|
RBAM_009780__ 1149 CGAGGTCGACACCATTGGCGGCTGGTTCCTTACCCAGAAATACGACGTCG 1198
BSNT_01641___ 1199 AAAAAGATGATTCCATCATCGAAGAGGGCTGCGAATTCATCATTAATGAA 1248
||.||.|.||.||.||.||||||||.|||||.|||||.||||||||||||
RBAM_009780__ 1199 AACAATACGACTCGATTATCGAAGAAGGCTGTGAATTTATCATTAATGAA 1248
BSNT_01641___ 1249 ATTGACGGCCACCACGTGGCATATATTGAAGTGAAAAA------GCTTCA 1292
|||||||||||||||||.||||||||.||||||||||| |.||
RBAM_009780__ 1249 ATTGACGGCCACCACGTCGCATATATCGAAGTGAAAAAACTGGCGTTT-- 1296
BSNT_01641___ 1293 AGAAGAAGAACTTCTGGAGACAGCTAACCAGCAGGAAGCATAA 1335
||.|||||.|||||.||.||..|.||..|.|||||||||
RBAM_009780__ 1297 ----GATGAACTGCTGGAAACCGCCGAACAAAAAGAAGCATAA 1335
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