Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01637 and RBAM_009750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:18
# Commandline: needle
# -asequence dna-align/BSNT_01637___yhdL.1.9828.seq
# -bsequence dna-align/RBAM_009750___yhdL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01637___yhdL-RBAM_009750___yhdL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01637___yhdL-RBAM_009750___yhdL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01637___yhdL
# 2: RBAM_009750___yhdL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1116
# Identity: 816/1116 (73.1%)
# Similarity: 816/1116 (73.1%)
# Gaps: 84/1116 ( 7.5%)
# Score: 2965.0
#
#
#=======================================
BSNT_01637___ 1 ATGAATGAAGAATTTAAAAAGCGTTTTGATCAATATAAAAATGGGGAAAT 50
|||||||||||||||||||||||||||.|.|||||.||||||||.|||||
RBAM_009750__ 1 ATGAATGAAGAATTTAAAAAGCGTTTTTACCAATACAAAAATGGAGAAAT 50
BSNT_01637___ 51 GAGCGACCAGGAAATGACTGCATTTGAGGAAGAACTTGAGAAGCTCGAAG 100
||||||||.|||||||.|.||.|||||.|||||.||.||.|||||.||||
RBAM_009750__ 51 GAGCGACCGGGAAATGGCCGCCTTTGAAGAAGAGCTGGAAAAGCTGGAAG 100
BSNT_01637___ 101 TATATCAGGAACTGATTGACAGCGAACTAGAGGACGATAACGATTGGGAT 150
|.||||||||..|||||||.||||||.|..|||||||....||.|||||.
RBAM_009750__ 101 TCTATCAGGAGTTGATTGAAAGCGAAATGCAGGACGACCGGGAATGGGAC 150
BSNT_01637___ 151 CTCAGCATCAGTCCTGAAAAACAAAAAGCGATTTTAGCCTACGGCAAACG 200
.||.|||||||.||.||||||||.||.||.||||||.|.|||||.|||||
RBAM_009750__ 151 GTCGGCATCAGCCCGGAAAAACAGAAGGCCATTTTATCATACGGAAAACG 200
BSNT_01637___ 201 CAAGTCTTATTTGCGAATTTCTGTGCTTGCCGTCATTTCGACATTGATGA 250
|||.||.||||||||.|||||.||.||.||||||||.||.||.|||||||
RBAM_009750__ 201 CAAATCGTATTTGCGGATTTCAGTTCTCGCCGTCATCTCCACTTTGATGA 250
BSNT_01637___ 251 TTTTGCCGCTTTGTACGCTGGGAAGCTACCTCTATTACGGAATGGGTGGG 300
||||||||||||||||..|.||||||||||||||||||||..||||.||.
RBAM_009750__ 251 TTTTGCCGCTTTGTACATTAGGAAGCTACCTCTATTACGGTCTGGGAGGA 300
BSNT_01637___ 301 AAACACAGCACCGGCAATGAGTTTATGGAAACTGCCGCAGTCACTGTAGC 350
|||.|.||||||||||||.|.||.|||||.||.||.|||||.||.||.||
RBAM_009750__ 301 AAAGAAAGCACCGGCAATCAATTAATGGAGACCGCGGCAGTGACGGTGGC 350
BSNT_01637___ 351 CCTGACC---ATGCCGAATGTTCTTGTTGATACTTCCGGACTGAAAAGCC 397
|||| ||||||||.||.||.||.|||||.||||||||||||||||
RBAM_009750__ 351 ---GACCACAATGCCGAACGTCCTCGTCGATACCTCCGGACTGAAAAGCC 397
BSNT_01637___ 398 AAGTGAAGCTATTTGGAATGAATACGGAATTCCCGCTGCAAAAGCAGATT 447
|.||||||||.||||||||||||||||||||.|||.|||||||||||||.
RBAM_009750__ 398 AGGTGAAGCTGTTTGGAATGAATACGGAATTTCCGTTGCAAAAGCAGATC 447
BSNT_01637___ 448 GGCACGAAGACGGCTGCCGTAG--GGAATGAACGGGTTGAAATGTTTTAT 495
|||||.||.|||....||||.| ||| ||||||.|||||||||||| |
RBAM_009750__ 448 GGCACAAAAACGAAATCCGTCGGCGGA--GAACGGATTGAAATGTTTT-T 494
BSNT_01637___ 496 A-ACAAAGTAAAAGCGCCGGCAGTAAACTACTATGACTTAGAAGTGAATA 544
| |.|..||.|||.||||.||.||.|||||||||||..||||.|.|
RBAM_009750__ 495 AGATACGGTCAAATCGCCTGCCGTTAACTACTATGATCTAGACGCG---- 540
BSNT_01637___ 545 TAACCGGC----CATTACTTTACACATCCTTC------AAACAAGTCTGA 584
..||.||| |||||.||..|.|||||||| ||| .||
RBAM_009750__ 541 GCACAGGCAAAGCATTATTTCGCCCATCCTTCCGGCTTAAA------GGA 584
BSNT_01637___ 585 ACAAACGACCGCAAAAGCAGAAAAAACGTTAAGCACATTGCCTGAAGGAA 634
||..||||..|..|||||.|.|.|.||.||||..|.||||||||||||||
RBAM_009750__ 585 ACGCACGATTGACAAAGCCGGACAGACATTAAAAAAATTGCCTGAAGGAA 634
BSNT_01637___ 635 CGGTATCAGAGGTCTACCTTTCATATGACCGTGCATATCC-----GACAA 679
..||..|.||||||||.|||||.||||||.|.||.||.|| ..|||
RBAM_009750__ 635 GCGTGGCGGAGGTCTATCTTTCTTATGACAGGGCCTACCCTTCTTCTCAA 684
BSNT_01637___ 680 AAGACGTGTATA----AC----AAATTCAAAGGCTATGATGTGAGCTTTT 721
||||| || ||| ||| ||.|||||||..||||
RBAM_009750__ 685 -------GTATATTCGACTTTTAAA---AAA---TACGATGTGAAGTTTT 721
BSNT_01637___ 722 TGTGGAACGCAATCGAAACAGAGAAAAACACAAAT----AAGACAG--CT 765
|.||||||||..|||||||.||||| |||| ||||||| ||
RBAM_009750__ 722 TATGGAACGCGGTCGAAACGGAGAA------AAATCTGAAAGACAGTCCT 765
BSNT_01637___ 766 TCCACAGAACCTCTTGGCTATCCTGGAAAGGATTCAAAGTTCTTGGCCGC 815
|...||||.||..|.||.|.|||.||.||.|||||.|||.|..||.||
RBAM_009750__ 766 TATGCAGAGCCGTTAGGATTTCCCGGGAAAGATTCCAAGATGGTGTCC-- 813
BSNT_01637___ 816 CCTTAATACAAAAGGCAAGTCGA-------ATGGCGATCAGTTTATCAAC 858
|..|.|.|||.||||| || |..|.||.||.||||||||.
RBAM_009750__ 814 ---TCTTTCGAAACGCAAG--GACAGACAGACCGTGAACAATTTATCAAT 858
BSNT_01637___ 859 GCCCTAAAATTCATGTCCAAACACGAAAAATGGGCTCAGGTCATTTCAAA 908
|||||..||||.||||||...||..||||||||||.||.|..||.||.||
RBAM_009750__ 859 GCCCTTGAATTTATGTCCCGCCATAAAAAATGGGCGCATGCAATATCGAA 908
BSNT_01637___ 909 ACGGAAAGACCTGAATGTAGATAACCGATTAGATTATGTAGAGAAAAACG 958
|||.||||||.|||||.|.|..|.||||.|.||.|||||.||..|..|||
RBAM_009750__ 909 ACGCAAAGACATGAATCTTGGCAGCCGAATCGACTATGTTGAACATCACG 958
BSNT_01637___ 959 GTGTCAATGTATACGGTTCGGTCGTTACAGGGCCAACCAAGGAAATCCAG 1008
|..|.||.||||||||.||.|||||.||.|||||.||.||.||||||.|.
RBAM_009750__ 959 GAATGAACGTATACGGCTCTGTCGTGACGGGGCCGACAAAAGAAATCGAA 1008
BSNT_01637___ 1009 CGCATGCTGAAAAATAAATCTGTAAAATCAGCGAATGTCGGCGAGGTGGA 1058
||..||||||||||.|||.|.||||||.||||.||..||||.||||||||
RBAM_009750__ 1009 CGTCTGCTGAAAAACAAAACAGTAAAAGCAGCAAACATCGGTGAGGTGGA 1058
BSNT_01637___ 1059 ATTATGGAACTGGTAA 1074
|||||||||.||||||
RBAM_009750__ 1059 ATTATGGAATTGGTAA 1074
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