Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01629 and RBAM_009720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:18
# Commandline: needle
# -asequence dna-align/BSNT_01629___yhdG.1.9828.seq
# -bsequence dna-align/RBAM_009720___yhdG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01629___yhdG-RBAM_009720___yhdG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01629___yhdG-RBAM_009720___yhdG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01629___yhdG
# 2: RBAM_009720___yhdG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1410
# Identity: 1089/1410 (77.2%)
# Similarity: 1089/1410 (77.2%)
# Gaps: 18/1410 ( 1.3%)
# Score: 4176.5
#
#
#=======================================
BSNT_01629___ 1 ATGAAAGGGAGCGTTTTTAGGAAGAAGAGCATTCAGGATTTAATCGCTGC 50
|||||.||||||||.||.||.|||||.|||||||||||..|..|.||.||
RBAM_009720__ 1 ATGAAGGGGAGCGTATTCAGAAAGAAAAGCATTCAGGACCTGCTTGCCGC 50
BSNT_01629___ 51 GACGAGCGGTGAAAAGTCTTTAAAAAGAGAATTAGGGGCATTTGATTTAA 100
.||||||||.||||||||..|.||||||||.||||||||.||||||||.|
RBAM_009720__ 51 AACGAGCGGGGAAAAGTCGCTGAAAAGAGAGTTAGGGGCCTTTGATTTGA 100
BSNT_01629___ 101 CATTGCTTGGAATCGGCGCCATTATTGGCACAGGGATTTTTGTTCTGACG 150
|..|.||.||.||.||.|||||.||.||.||.|||||||||||..|.||.
RBAM_009720__ 101 CCCTTCTGGGGATAGGGGCCATCATCGGAACGGGGATTTTTGTATTAACC 150
BSNT_01629___ 151 GGAACAGGTGCAGTCACGGCCGGTCCCGGGCTGACGATTTCATTTGTTGT 200
||||||||.||.||||||||.||.||.||||||||..||||||||||..|
RBAM_009720__ 151 GGAACAGGCGCTGTCACGGCGGGGCCGGGGCTGACCGTTTCATTTGTCAT 200
BSNT_01629___ 201 GGCGGCGCTGGCTTGTTTATTCGCCGCCCTGTCTTACGCGGAATTTGCGT 250
.||.||.||.||.||||||||.||.||.|||||.||.||.||||||||.|
RBAM_009720__ 201 CGCCGCTCTTGCGTGTTTATTTGCGGCTCTGTCATATGCCGAATTTGCTT 250
BSNT_01629___ 251 CAAGTGTGCCTGTTTCAGGTTCGGTGTATACATTCACTTATGCGACATTG 300
||||.||.||.|||||||||||.||.||.||.||.||||||||||||.||
RBAM_009720__ 251 CAAGCGTCCCGGTTTCAGGTTCCGTCTACACGTTTACTTATGCGACACTG 300
BSNT_01629___ 301 GGAGAGCTTATGGCCTTTATTATCGGGTGGGATTTAATTTTAGAATACAT 350
||.||.|||.|.||.|||||.|||||.|||||||||||.||.|||||.||
RBAM_009720__ 301 GGTGAACTTCTCGCGTTTATCATCGGATGGGATTTAATCTTGGAATATAT 350
BSNT_01629___ 351 GCTGGCGGTAAGTGCAGTGTCGGTCGGCTGGTCTGGTTATTTCCAATCGT 400
|||.||.||.||.||.||.||||||||.|||||.||.|||||.|||||.|
RBAM_009720__ 351 GCTCGCCGTCAGCGCGGTTTCGGTCGGGTGGTCCGGCTATTTTCAATCAT 400
BSNT_01629___ 401 TTTTATCAGGGC-TCGGCATTCATCTTCCGGTTGCTTTAACAGCGGCACC 449
|.||..| |||| |||||||||||||||||...||.|||||.||.||.||
RBAM_009720__ 401 TCTTGGC-GGGCTTCGGCATTCATCTTCCGACCGCATTAACGGCCGCGCC 449
BSNT_01629___ 450 GGGCGCAGTGAAAGGCACCTTTACCCTGTTTAATCTTCCTGCATTCGTCA 499
|||..|..|.||||||||..|.||..|.||||||||.||.|||||.||.|
RBAM_009720__ 450 GGGATCTATTAAAGGCACGGTCACATTCTTTAATCTCCCCGCATTTGTTA 499
BSNT_01629___ 500 TTGTAATGGCGATCACATATTTGCTTTATTTAGGCATCAAAGAATCAAAA 549
|.||..|.|||||.||||...|.||.|||||||||||.||.|||||.||.
RBAM_009720__ 500 TCGTGCTTGCGATTACATTCCTTCTCTATTTAGGCATTAAGGAATCGAAG 549
BSNT_01629___ 550 AGAGTCAACAATATCATGGTTATCTTGAAGATACTGGTTGTTCTGCTGTT 599
.|.|||||.|||||.|||||.||.||||||.|.|||||||||||..||||
RBAM_009720__ 550 CGGGTCAATAATATTATGGTCATTTTGAAGGTTCTGGTTGTTCTATTGTT 599
BSNT_01629___ 600 TATCGCGGTGGCAGCCGTTTACGTGAAGCCGCACAACTGGCAGCCGTTTA 649
||||||.||.||.|||||.||.||.||.||.|||||||||||||||||||
RBAM_009720__ 600 TATCGCCGTTGCGGCCGTATATGTCAAACCTCACAACTGGCAGCCGTTTA 649
BSNT_01629___ 650 TGCCAATGGGCTTTGGCGGCGTGTTCAGTGCAGCGGCGCTCGTATTCTTT 699
|.||.|||||.||.|||||.||.||||||||.|||||||||||.|||||.
RBAM_009720__ 650 TACCGATGGGGTTCGGCGGTGTTTTCAGTGCCGCGGCGCTCGTTTTCTTC 699
BSNT_01629___ 700 GCTTTTATCGGATTTGACGCTGTATCCTCTGCTGCGGAAGAAACGAAAAA 749
.||||||||||.||||||||.||.||.||.||.||.||||||||||||||
RBAM_009720__ 700 TCTTTTATCGGTTTTGACGCCGTCTCTTCCGCCGCTGAAGAAACGAAAAA 749
BSNT_01629___ 750 TCCCGCGAAGGATCTGCCTAAAGGCATTATTTTCTCTTTATTGGTCTGCA 799
|||.||||||||||||||.|||||.|||||.||.||.|||.|.|||||||
RBAM_009720__ 750 TCCGGCGAAGGATCTGCCGAAAGGAATTATCTTTTCATTAATCGTCTGCA 799
BSNT_01629___ 800 CGATTTTATATGTCACCGTATCAGCGATCATGACTGGGGTTATCCCGTTT 849
|..|..|.|||||.||||||||.|||||.|||||.||.||..|.||||||
RBAM_009720__ 800 CCGTGCTGTATGTGACCGTATCGGCGATTATGACGGGCGTCGTTCCGTTT 849
BSNT_01629___ 850 GCTCAATTTGCGGGTGTGGATCATCCGGTTTCTCTAGTTCTTCAAAGCGC 899
||.|..||||..||.||.||.|||||.||.|||||.||.||.||.|..||
RBAM_009720__ 850 GCCCGCTTTGAAGGCGTTGACCATCCCGTGTCTCTCGTCCTGCAGATGGC 899
BSNT_01629___ 900 AGGGCAAAACTGGGTGGCTGGCATCATTGATATTGGCGCCGTGCTGGGAA 949
.||.||.||.||||||||.||.||.||||||||.|||||.|||.||||.|
RBAM_009720__ 900 CGGACAGAATTGGGTGGCCGGGATTATTGATATCGGCGCAGTGTTGGGGA 949
BSNT_01629___ 950 TGACAACAGTTATGCTTGTGATGCTTTACGGGCAGACACGCGTCATGTTT 999
|||||||.||.|||||.||.|||||.|||||.|||||..|.||.||||||
RBAM_009720__ 950 TGACAACGGTGATGCTCGTCATGCTGTACGGCCAGACGAGGGTGATGTTT 999
BSNT_01629___ 1000 GCCATGTCTCGTGACGGACTTGTGCCGGGCTCACTTTCTAAAGTGCATCC 1049
||||||||.||||||||..|.||||||||..|.|||||.|||||.|||||
RBAM_009720__ 1000 GCCATGTCCCGTGACGGTTTGGTGCCGGGGGCGCTTTCAAAAGTCCATCC 1049
BSNT_01629___ 1050 AAAGCACAAAACACCTTATGTGGCCACTTGGTTTTTCGGAACGATGTCGG 1099
.|||||.|||||.||..|.||||..||.|||.|.|||||.|...||||||
RBAM_009720__ 1050 GAAGCATAAAACGCCGCACGTGGTGACATGGGTGTTCGGCATCCTGTCGG 1099
BSNT_01629___ 1100 CGCTTCTCGGCTCACTTGTTCCGCTGGATGAACTTGCAAAGCTGGTGAAC 1149
|..|.||||||||.||.||.|||||.||||||||.||.||||||||||||
RBAM_009720__ 1100 CATTACTCGGCTCGCTCGTCCCGCTTGATGAACTGGCGAAGCTGGTGAAC 1149
BSNT_01629___ 1150 ATCGGGACACTGTCGGCATTTGTCCTGATTTCTGTGGCAGTTATCGTTTT 1199
|||||.||.||..|.|||||||||||||||||.|||||.||||||||.||
RBAM_009720__ 1150 ATCGGCACGCTTGCCGCATTTGTCCTGATTTCCGTGGCGGTTATCGTATT 1199
BSNT_01629___ 1200 GAGAAAGAAGCAGCCCGATCTTCCGAGAGCCTTTAAATGCCCGGGAGTTC 1249
|||||||||.|||||.|||||.||.||.||.||||||||.|||||.||||
RBAM_009720__ 1200 GAGAAAGAAACAGCCTGATCTGCCCAGGGCTTTTAAATGTCCGGGGGTTC 1249
BSNT_01629___ 1250 CGGTTATCCCAGGCCTGGCGATTCTGTTCTGCCTGTTCTTGATTTTAAAT 1299
|..||||.||.....||.|.||||||||||||.||||.||||||.|.||.
RBAM_009720__ 1250 CCTTTATTCCGATATTGTCCATTCTGTTCTGCGTGTTTTTGATTATTAAC 1299
BSNT_01629___ 1300 CTGGGATGGGTG-----ACGATTGTCCGCTTCCTAGTGTGGCTGTTAATC 1344
| |.||.| ||.||..||||.|||.|..|.||||||.|.|||
RBAM_009720__ 1300 C-----TTGGCGCCACCACCATATTCCGTTTCTTTATCTGGCTGATCATC 1344
BSNT_01629___ 1345 GGCTTGGTAATTTATTTCCTGTATTCAAGAAAGCATTCAAAATTAA---- 1390
||..||||.|||||||||.|.|||||.|||||||||||.|||||||
RBAM_009720__ 1345 GGTCTGGTGATTTATTTCTTATATTCGAGAAAGCATTCGAAATTAAACGG 1394
BSNT_01629___ 1391 --ATCAATAA 1398
||...|||
RBAM_009720__ 1395 GGATTTGTAA 1404
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