Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01625 and RBAM_009700
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_01625___citA.1.9828.seq
# -bsequence dna-align/RBAM_009700___citA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01625___citA-RBAM_009700___citA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01625___citA-RBAM_009700___citA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01625___citA
# 2: RBAM_009700___citA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1160
# Identity: 828/1160 (71.4%)
# Similarity: 828/1160 (71.4%)
# Gaps: 109/1160 ( 9.4%)
# Score: 2878.5
#
#
#=======================================
BSNT_01625___ 1 -------------ATGGTACATTACGGATT-AAAGGGAATTACATGTGTA 36
||.|| ||||| |||||| |||||.||||.|
RBAM_009700__ 1 ATGAAATTGATTTATCGT-------GGATTGAAAGGG-ATTACTTGTGCA 42
BSNT_01625___ 37 GAAACATCCATCAGCCATATTGATGGTGAAAAAGGGCGTCTGATTTACAG 86
|||||..|.||||||||.|||||.||.|||||.||||.|.|.||.||..|
RBAM_009700__ 43 GAAACGGCTATCAGCCACATTGACGGAGAAAAGGGGCATTTAATATATCG 92
BSNT_01625___ 87 AGGACATCATGCAAAAGACATCGCACTG-AATCATAGCTTTGAAGAAGCG 135
.||..||.||||.||.||.|||||.||| |||| .||.||||||||||||
RBAM_009700__ 93 CGGCTATGATGCGAAGGATATCGCGCTGCAATC-CAGTTTTGAAGAAGCG 141
BSNT_01625___ 136 GCTTATTTGATTTTATTTGGAAAACGGC-CTTCAACTGAAG------AAT 178
||.|||.|.||||| |||...||| |||| ||||.| |||
RBAM_009700__ 142 GCGTATCTCATTTT-----GAACGGGGCGCTTC--CTGATGAGCGGCAAT 184
BSNT_01625___ 179 TGCAGGTATTTAAAGATAAGCTGGCTGCGGAACGGAATCTTCCGGAACAT 228
|||..|..|||.|.||..|.||.||.||.||.||....||||||.|||||
RBAM_009700__ 185 TGCTTGCGTTTCAGGAAGAACTTGCAGCCGAGCGCGGGCTTCCGAAACAT 234
BSNT_01625___ 229 ATTGAGCG-CTTGATTCAATCACTGCCAAACAACATGGACGATATGTCGG 277
||||.|| |||..|..||.|.||.||..|..|.||||||||.|||.|||
RBAM_009700__ 235 -TTGATCGACTTACTGGAAACGCTTCCGGATGAAATGGACGACATGGCGG 283
BSNT_01625___ 278 TGCTGAGAACGGTTGTTTCAGCATTGGGGGAAAATACGTACACATTCCAT 327
||||||||||||.||||||||..|||||...|.||.|.|..|||| ||
RBAM_009700__ 284 TGCTGAGAACGGCTGTTTCAGGTTTGGGCACAGATTCATTTACAT---AT 330
BSNT_01625___ 328 CCG---AAAACAGAAGAAGCAATCCGGCTGATTGCAATCACGGCTTCCAT 374
||| ||..|.||||||||.||....||||||||..||||..|..|.||
RBAM_009700__ 331 CCGCCCAAGCCGGAAGAAGCGATTAAACTGATTGCCGTCACACCGACGAT 380
BSNT_01625___ 375 CATTGCATACAGAAAAAGATGGACGCGCGGTGAACAA--GCA------AT 416
.|||||.||||||.| .|||.||.||||| ||| .|
RBAM_009700__ 381 TATTGCGTACAGATA---------CCGCCGTAAACAAGGGCAGGAAGCGT 421
BSNT_01625___ 417 TG-CACCTTCTTCCCAGTACGGACATGTCGAAAACTACTATTATATGCTC 465
|| |||||....|.|..||||||||.||.||||||||.|..||||||||.
RBAM_009700__ 422 TGTCACCTGAGGCGCGATACGGACACGTTGAAAACTATTTGTATATGCTG 471
BSNT_01625___ 466 ACAGGCGAACAGCCTTCAGAGGCAAAAAAGAAAGCGCTTGAAACCTATAT 515
||||||...|||||.||.|..||..|||||||||||||||||||.|||||
RBAM_009700__ 472 ACAGGCAGGCAGCCGTCCGCAGCCCAAAAGAAAGCGCTTGAAACGTATAT 521
BSNT_01625___ 516 GATTCTGGCCATGGAGCACGGCATGAACGCATCGACTTTTTCGGCACGAG 565
|||||||||.|||||||||||.|||||.||||||||||||||.||..|||
RBAM_009700__ 522 GATTCTGGCGATGGAGCACGGGATGAATGCATCGACTTTTTCAGCGAGAG 571
BSNT_01625___ 566 TCA-CGTTATCAACAGAGAGTGATTTAGTGTCAGCCGTCACGGCTGCTCT 614
||| |||| ||.||.||....||.||||||||.||||||||.||.||.||
RBAM_009700__ 572 TCACCGTT-TCGACTGAATCGGACTTAGTGTCTGCCGTCACTGCCGCACT 620
BSNT_01625___ 615 CGGCACGATGAAAGGTCCGCTTCACGGAGGCGCTCCTTCTGCGGTGACAA 664
.||.|||||||||||.|||||.|||||||||||.|||||.|..||.||.|
RBAM_009700__ 621 AGGTACGATGAAAGGGCCGCTGCACGGAGGCGCGCCTTCAGGCGTCACGA 670
BSNT_01625___ 665 AAATGCTTGAAGACATTGGAGAAAAAGAACATGCTGAAGCATATCTGAAA 714
||||||||||||||||.||..||||||||.||||.|||||.|||.||..|
RBAM_009700__ 671 AAATGCTTGAAGACATCGGGAAAAAAGAAAATGCAGAAGCGTATTTGGCA 720
BSNT_01625___ 715 GAAAAACTCGAA-------AAAGGAGAGCGCTTGATGGGATTCGGCCACA 757
| |||| |..|||||.|||.|||||||.|||||.||||
RBAM_009700__ 721 G-------CGAAGCTTATGAGGGGAGAACGCCTGATGGGCTTCGGGCACA 763
BSNT_01625___ 758 GGGTGTACAAAACAAAAGACCCGCGGGCAGAAGCTTTGAGACAGAAA-GC 806
||||||||||||||||||||||||||||.|||||..||.| ||.||| ||
RBAM_009700__ 764 GGGTGTACAAAACAAAAGACCCGCGGGCGGAAGCGCTGCG-CATAAAGGC 812
BSNT_01625___ 807 AGAACAGGTGGCCGGCAATGA-CCGT-GATCTTGATCTT-GCGCTGCATG 853
.|||.|.|||||.||.||||| |||| | ||||| ||| |||||..|||
RBAM_009700__ 813 TGAAGAAGTGGCGGGAAATGATCCGTCG--CTTGA-CTTGGCGCTTTATG 859
BSNT_01625___ 854 T--AGAAGCAGAAGCGATTCGTTTACTAGA--AATCTACAAACCGGGACG 899
| ||||| |||||.||.||..|..|||| || ||.||.||.|||||
RBAM_009700__ 860 TGGAGAAG--GAAGCCATCCGCCTGTTAGAGCAA--TATAAGCCCGGACG 905
BSNT_01625___ 900 AAAGCTGTACACAAATGTTGAATTTTACGCGGCTGCAGTGATGAAGGCCA 949
.||||||||.||.|||||.||.||||||||.||.||.||||||.||||||
RBAM_009700__ 906 GAAGCTGTATACGAATGTGGAGTTTTACGCAGCGGCTGTGATGCAGGCCA 955
BSNT_01625___ 950 TCGATTTTGACGATGAGTTGTTTACTCCGACCTTTTCAGCAAGCCGAATG 999
|.|||.|.|||.||||.||.|||||.||||||||||||||||||.|||||
RBAM_009700__ 956 TTGATGTCGACAATGATTTATTTACGCCGACCTTTTCAGCAAGCAGAATG 1005
BSNT_01625___ 1000 GTAGGGTGGTGCGCCCATGTGCTGGAACAGGCAGAAAACAACATGATTTT 1049
|.|||.||||||||.||.|||||.||||||.|.|...||||||||||||.
RBAM_009700__ 1006 GCAGGCTGGTGCGCACACGTGCTTGAACAGTCCGCTGACAACATGATTTA 1055
BSNT_01625___ 1050 CCGCCCGTCAGCGAAATATACCGGTGCCATTCCCGA--------GGAAGT 1091
|.|.|||||.||||||||.|||||.||..||||||| .|.||
RBAM_009700__ 1056 CAGGCCGTCTGCGAAATACACCGGCGCTTTTCCCGAAACGGCTCAGCAG- 1104
BSNT_01625___ 1092 TCTTTCATAA 1101
||||.|
RBAM_009700__ 1105 -CTTTAA--- 1110
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