Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01622 and RBAM_009680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_01622___lytE.1.9828.seq
# -bsequence dna-align/RBAM_009680___lytE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01622___lytE-RBAM_009680___lytE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01622___lytE-RBAM_009680___lytE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01622___lytE
# 2: RBAM_009680___lytE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1041
# Identity: 641/1041 (61.6%)
# Similarity: 641/1041 (61.6%)
# Gaps: 252/1041 (24.2%)
# Score: 2173.5
#
#
#=======================================
BSNT_01622___ 1 ATGAAAAAGCAAATCATTACAGCTACGACAGCAGTTGTTTTAGGATCGAC 50
||||||||||||.|..|||||||.||.||.|||||.|||||.||..||||
RBAM_009680__ 1 ATGAAAAAGCAACTTGTTACAGCAACAACGGCAGTGGTTTTGGGGACGAC 50
BSNT_01622___ 51 GTTATTTGCAGGAGCGGCATCTGCACAAAGCATTAAGGTGAAAAAAGGCG 100
.||.|||||.||.|||||||||||.||||..||||||||.||||||||||
RBAM_009680__ 51 TTTGTTTGCGGGCGCGGCATCTGCGCAAACGATTAAGGTAAAAAAAGGCG 100
BSNT_01622___ 101 ACACGTTATGGGATCTTTCAAGAAAATACG--ACACAACGATCAGTAAA- 147
|.||.|||||||..||||| |||| || |...|||| |||.|.||
RBAM_009680__ 101 ATACATTATGGGGACTTTC----AAAT-CGGTATGGAACG-TCAATTAAT 144
BSNT_01622___ 148 ---ATTAAATCAGAGAACCACCT----TCGTTCAGATATTATTTATGTGG 190
||||||||.||||||.|..| ||| |||||.|||||..|.|
RBAM_009680__ 145 TCCATTAAATCTGAGAACAAATTAAAATCG----GATATCATTTACATCG 190
BSNT_01622___ 191 GACAAACTTTATCGATTAACGGCAAATCTA----CAAGTTCAA---AAAG 233
|.||.||..|.|||||||||||.||||| | ||.|||||| .|||
RBAM_009680__ 191 GTCAGACGCTTTCGATTAACGGTAAATC-ATCCTCAGGTTCAAGCTCAAG 239
BSNT_01622___ 234 CAGC-AGTTCTTCTTCCTCTTCTTCTACATACAAAGT----AAAGAGCGG 278
|||| || ||.||.||.||||||||.||||| ||| ||
RBAM_009680__ 240 CAGCAAG-------TCATCATCGTCTACATATAAAGTCGTAAAA----GG 278
BSNT_01622___ 279 GGACAGCCTTTGGAAAATTTCAAAAAAATACGGCATGAC----AATCAAT 324
.||||||||||||||||||.|.||.|||||....||||| ||.|||
RBAM_009680__ 279 CGACAGCCTTTGGAAAATTGCGAATAAATATAAAATGACGGTAAACCAA- 327
BSNT_01622___ 325 GAACTGAAGAAG-CTGAATGGCTTAAAATCAGATTTGCTTCGTGTTGGAC 373
|.||.||| .|.||.||.||||||.|.||..||.|.||..|.||||
RBAM_009680__ 328 ----TTAAAAAGTTTAAACGGTTTAAAAACGGACCTGATCCGCATCGGAC 373
BSNT_01622___ 374 AAGTCCTGAAACTGAAAGGTTCAACTAGTTCAAGCAGCTCCAGCTCATCA 423
||||.||.|||.|.||.||.|||||| |||.|
RBAM_009680__ 374 AAGTTCTTAAAGTAAAGGGATCAACT------------TCCGG------- 404
BSNT_01622___ 424 AAAGTGTCATCGTCTTCAACTTCTACTTATAAAGTGAAGAGCGGAGACAG 473
||||||.|||
RBAM_009680__ 405 --------------TTCAACGTCT-------------------------- 414
BSNT_01622___ 474 CCTTTCTAAAATTGCGAGCAAATACGGCACTACGGTTAGCAAATTAAAAA 523
RBAM_009680__ 414 -------------------------------------------------- 414
BSNT_01622___ 524 GCTTAAACGGCTTAAAATCAGATGTAATCTATGTCAACCAAGTATTGAAG 573
|||| .||||..||||.|
RBAM_009680__ 415 -----------------TCAG----GATCTTCGTCATC------------ 431
BSNT_01622___ 574 GTGAAAGGAACAAGCACAAGCAGCTCAAAACCTGCTTCATCTTCATCGTC 623
.||||||| ||||||| || |.|
RBAM_009680__ 432 ----------------AAAGCAGC----------CTTCATC--CA--GCC 451
BSNT_01622___ 624 TTCAAGCAGCA-AAACGTCATCTACATCACTTAATGTGAGCAAGCTGGTT 672
.|.|.||.||| |.||| |.| ||.|||||.|.|||||||.||
RBAM_009680__ 452 ATAATGCTGCACAGACG--------AGC-CTGAATGTAAACAAGCTGATT 492
BSNT_01622___ 673 TCTGATGCAAAAGCGTTAGTCGGAACGCCATACAAATGGGGCGGAACGAC 722
||||||||..||.|.|||..|||.|||||.||...||||||||||||.||
RBAM_009680__ 493 TCTGATGCGCAATCTTTAACCGGGACGCCGTATGTATGGGGCGGAACAAC 542
BSNT_01622___ 723 AACTTCCGGCTTTGACTGCAGCGGATTCATTTGGTACGTACTGAATAAAC 772
|||||||||||||||||||||||||||.||.|||||| ||| .|||||
RBAM_009680__ 543 AACTTCCGGCTTTGACTGCAGCGGATTTATCTGGTAC---CTG-TTAAAC 588
BSNT_01622___ 773 AAACA----AGTGTGGGCAGAACAAGCACTGCAGGATACTGGAGTTCTAT 818
||||| |||||.||||||||.||||||||.|||||||||||.||.||
RBAM_009680__ 589 AAACAGACGAGTGTCGGCAGAACGAGCACTGCGGGATACTGGAGCTCAAT 638
BSNT_01622___ 819 GAAGAGCATTGCCAGCCCGTCTGTTGGTGATTTCGTCTTCTTCACAACAT 868
|||||||.|..||||||||||....||.||.|||||||||||.|||||||
RBAM_009680__ 639 GAAGAGCGTGTCCAGCCCGTCAAGAGGAGACTTCGTCTTCTTTACAACAT 688
BSNT_01622___ 869 ATAAATCCGGCCCTTCTCACATGGGGATTTACATTGGAAACAACAGTTTC 918
||.|..||||||||||.||||||||..|.|||||.||||||||||..|||
RBAM_009680__ 689 ATCAGGCCGGCCCTTCACACATGGGTGTGTACATCGGAAACAACAAGTTC 738
BSNT_01622___ 919 ATTCATGCAGGATCTGACGGCGT----ACAAATCAGCAGCCTGAACAACA 964
||.|||||.||.||||||||||| ||||.|.| .|||||.||||
RBAM_009680__ 739 ATCCATGCCGGTTCTGACGGCGTCACAACAAGTGA----TCTGAATAACA 784
BSNT_01622___ 965 GCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAA 1005
||||||||||.|||||.||.||.||.||||||||||||||.
RBAM_009680__ 785 GCTACTGGAAACCTCGCTATCTTGGCGCGAAAAGATTCTAG 825
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