Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01622 and RBAM_009680

See Amino acid alignment / Visit BSNT_01622 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_01622___lytE.1.9828.seq
#    -bsequence dna-align/RBAM_009680___lytE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01622___lytE-RBAM_009680___lytE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01622___lytE-RBAM_009680___lytE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01622___lytE
# 2: RBAM_009680___lytE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1041
# Identity:     641/1041 (61.6%)
# Similarity:   641/1041 (61.6%)
# Gaps:         252/1041 (24.2%)
# Score: 2173.5
# 
#
#=======================================

BSNT_01622___      1 ATGAAAAAGCAAATCATTACAGCTACGACAGCAGTTGTTTTAGGATCGAC     50
                     ||||||||||||.|..|||||||.||.||.|||||.|||||.||..||||
RBAM_009680__      1 ATGAAAAAGCAACTTGTTACAGCAACAACGGCAGTGGTTTTGGGGACGAC     50

BSNT_01622___     51 GTTATTTGCAGGAGCGGCATCTGCACAAAGCATTAAGGTGAAAAAAGGCG    100
                     .||.|||||.||.|||||||||||.||||..||||||||.||||||||||
RBAM_009680__     51 TTTGTTTGCGGGCGCGGCATCTGCGCAAACGATTAAGGTAAAAAAAGGCG    100

BSNT_01622___    101 ACACGTTATGGGATCTTTCAAGAAAATACG--ACACAACGATCAGTAAA-    147
                     |.||.|||||||..|||||    |||| ||  |...|||| |||.|.|| 
RBAM_009680__    101 ATACATTATGGGGACTTTC----AAAT-CGGTATGGAACG-TCAATTAAT    144

BSNT_01622___    148 ---ATTAAATCAGAGAACCACCT----TCGTTCAGATATTATTTATGTGG    190
                        ||||||||.||||||.|..|    |||    |||||.|||||..|.|
RBAM_009680__    145 TCCATTAAATCTGAGAACAAATTAAAATCG----GATATCATTTACATCG    190

BSNT_01622___    191 GACAAACTTTATCGATTAACGGCAAATCTA----CAAGTTCAA---AAAG    233
                     |.||.||..|.|||||||||||.||||| |    ||.||||||   .|||
RBAM_009680__    191 GTCAGACGCTTTCGATTAACGGTAAATC-ATCCTCAGGTTCAAGCTCAAG    239

BSNT_01622___    234 CAGC-AGTTCTTCTTCCTCTTCTTCTACATACAAAGT----AAAGAGCGG    278
                     |||| ||       ||.||.||.||||||||.|||||    |||    ||
RBAM_009680__    240 CAGCAAG-------TCATCATCGTCTACATATAAAGTCGTAAAA----GG    278

BSNT_01622___    279 GGACAGCCTTTGGAAAATTTCAAAAAAATACGGCATGAC----AATCAAT    324
                     .||||||||||||||||||.|.||.|||||....|||||    ||.||| 
RBAM_009680__    279 CGACAGCCTTTGGAAAATTGCGAATAAATATAAAATGACGGTAAACCAA-    327

BSNT_01622___    325 GAACTGAAGAAG-CTGAATGGCTTAAAATCAGATTTGCTTCGTGTTGGAC    373
                         |.||.||| .|.||.||.||||||.|.||..||.|.||..|.||||
RBAM_009680__    328 ----TTAAAAAGTTTAAACGGTTTAAAAACGGACCTGATCCGCATCGGAC    373

BSNT_01622___    374 AAGTCCTGAAACTGAAAGGTTCAACTAGTTCAAGCAGCTCCAGCTCATCA    423
                     ||||.||.|||.|.||.||.||||||            |||.|       
RBAM_009680__    374 AAGTTCTTAAAGTAAAGGGATCAACT------------TCCGG-------    404

BSNT_01622___    424 AAAGTGTCATCGTCTTCAACTTCTACTTATAAAGTGAAGAGCGGAGACAG    473
                                   ||||||.|||                          
RBAM_009680__    405 --------------TTCAACGTCT--------------------------    414

BSNT_01622___    474 CCTTTCTAAAATTGCGAGCAAATACGGCACTACGGTTAGCAAATTAAAAA    523
                                                                       
RBAM_009680__    414 --------------------------------------------------    414

BSNT_01622___    524 GCTTAAACGGCTTAAAATCAGATGTAATCTATGTCAACCAAGTATTGAAG    573
                                      ||||    .||||..||||.|            
RBAM_009680__    415 -----------------TCAG----GATCTTCGTCATC------------    431

BSNT_01622___    574 GTGAAAGGAACAAGCACAAGCAGCTCAAAACCTGCTTCATCTTCATCGTC    623
                                     .|||||||          |||||||  ||  |.|
RBAM_009680__    432 ----------------AAAGCAGC----------CTTCATC--CA--GCC    451

BSNT_01622___    624 TTCAAGCAGCA-AAACGTCATCTACATCACTTAATGTGAGCAAGCTGGTT    672
                     .|.|.||.||| |.|||        |.| ||.|||||.|.|||||||.||
RBAM_009680__    452 ATAATGCTGCACAGACG--------AGC-CTGAATGTAAACAAGCTGATT    492

BSNT_01622___    673 TCTGATGCAAAAGCGTTAGTCGGAACGCCATACAAATGGGGCGGAACGAC    722
                     ||||||||..||.|.|||..|||.|||||.||...||||||||||||.||
RBAM_009680__    493 TCTGATGCGCAATCTTTAACCGGGACGCCGTATGTATGGGGCGGAACAAC    542

BSNT_01622___    723 AACTTCCGGCTTTGACTGCAGCGGATTCATTTGGTACGTACTGAATAAAC    772
                     |||||||||||||||||||||||||||.||.||||||   ||| .|||||
RBAM_009680__    543 AACTTCCGGCTTTGACTGCAGCGGATTTATCTGGTAC---CTG-TTAAAC    588

BSNT_01622___    773 AAACA----AGTGTGGGCAGAACAAGCACTGCAGGATACTGGAGTTCTAT    818
                     |||||    |||||.||||||||.||||||||.|||||||||||.||.||
RBAM_009680__    589 AAACAGACGAGTGTCGGCAGAACGAGCACTGCGGGATACTGGAGCTCAAT    638

BSNT_01622___    819 GAAGAGCATTGCCAGCCCGTCTGTTGGTGATTTCGTCTTCTTCACAACAT    868
                     |||||||.|..||||||||||....||.||.|||||||||||.|||||||
RBAM_009680__    639 GAAGAGCGTGTCCAGCCCGTCAAGAGGAGACTTCGTCTTCTTTACAACAT    688

BSNT_01622___    869 ATAAATCCGGCCCTTCTCACATGGGGATTTACATTGGAAACAACAGTTTC    918
                     ||.|..||||||||||.||||||||..|.|||||.||||||||||..|||
RBAM_009680__    689 ATCAGGCCGGCCCTTCACACATGGGTGTGTACATCGGAAACAACAAGTTC    738

BSNT_01622___    919 ATTCATGCAGGATCTGACGGCGT----ACAAATCAGCAGCCTGAACAACA    964
                     ||.|||||.||.|||||||||||    ||||.|.|    .|||||.||||
RBAM_009680__    739 ATCCATGCCGGTTCTGACGGCGTCACAACAAGTGA----TCTGAATAACA    784

BSNT_01622___    965 GCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAA   1005
                     ||||||||||.|||||.||.||.||.||||||||||||||.
RBAM_009680__    785 GCTACTGGAAACCTCGCTATCTTGGCGCGAAAAGATTCTAG    825


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