Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01620 and RBAM_009670
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_01620___phoA.1.9828.seq
# -bsequence dna-align/RBAM_009670___phoA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01620___phoA-RBAM_009670___phoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01620___phoA-RBAM_009670___phoA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01620___phoA
# 2: RBAM_009670___phoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1440
# Identity: 1005/1440 (69.8%)
# Similarity: 1005/1440 (69.8%)
# Gaps: 123/1440 ( 8.5%)
# Score: 3345.0
#
#
#=======================================
BSNT_01620___ 1 ATGAGTTTGTTTCAAAATATGAAATCAAAACTTCTGCCAATCGCCGCTGT 50
||||||.|.|||.||.|..|...|||||||||||||||....||.||.||
RBAM_009670__ 1 ATGAGTCTATTTAAACAGGTTCGATCAAAACTTCTGCCGGCTGCAGCCGT 50
BSNT_01620___ 51 TTCTGTCCTTACAGCTGGAGTCT--TTGCCGGAGCTGAGCTGCAGCAAAC 98
.||.||.||.|||||.| |||| ||||.||.||.|.|||.|||||..|
RBAM_009670__ 51 ATCCGTGCTGACAGCCG--GTCTGATTGCGGGTGCGGGGCTTCAGCACTC 98
BSNT_01620___ 99 AGAAAAGGCCAGCGCCAAAAAA----CAAGACAAAGCTGAGATCAGAAAT 144
.|||.||| |.|||.||||||| |..||||||...||.||||||||.
RBAM_009670__ 99 CGAACAGG-CTGCGGCAAAAAAACAGCCTGACAAAAACGAAATCAGAAAC 147
BSNT_01620___ 145 GTCATTGTGATGATAGGCGACGGCATGGGGACGCCTTACATAAGAGCCTA 194
|||||..|.|||.|.||||||||.|||||..|.||.||.||.|..|||||
RBAM_009670__ 148 GTCATCTTCATGGTCGGCGACGGAATGGGCGCTCCCTATATGAACGCCTA 197
BSNT_01620___ 195 CCGTTC---CATGAAAAA---TAA-----CGG-TGACACACCGAATAACC 232
|||||| |||.||.|| .|| ||| || |.||
RBAM_009670__ 198 CCGTTCGGTCATTAACAAAGGAAAGCCTTCGGATG-------GTAT---- 236
BSNT_01620___ 233 CGAAGTTAACAGAATTTGACCGGAACCTGACAGGCATGATGATGACGCAT 282
|||..|.||.|.|||.||.|..||.||.||.||.|||||||||||..||
RBAM_009670__ 237 -GAAACTGACGGCATTCGATCCCAATCTCACCGGTATGATGATGACTTAT 285
BSNT_01620___ 283 CCGGATGACCCTGACTATAATATTACAGATTCAGCAGCAGCCGGAACAGC 332
||.||.||.|||||.|..||||||||.|||||.||.||.||.||.||.||
RBAM_009670__ 286 CCTGACGATCCTGATTCCAATATTACCGATTCCGCGGCGGCTGGCACGGC 335
BSNT_01620___ 333 ATTAGCGACAGGCGTTAAGACATATAACAATGCAATTGGCGTCGATAAAA 382
|.|.||.||.|||||.||.||.||||||...||.||.||.||||||||||
RBAM_009670__ 336 AATGGCCACGGGCGTGAAAACGTATAACGCGGCGATCGGAGTCGATAAAA 385
BSNT_01620___ 383 ACGGGAAAAAA----GTGAAATCTGTACTTGAAGAGGCCAAACAGCAAGG 428
|.|| ||| ||.|||||.||.||.|||||.||.|||||...|||
RBAM_009670__ 386 AAGG----AAAGCGGGTAAAATCCGTCCTCGAAGAAGCGAAACAAAGAGG 431
BSNT_01620___ 429 CAAGTCAACAGGGCTTGTCGCCACGTCTGAAATTAACCACGCCACTCCAG 478
.||.||.||.||.||||||||.||.||.||.|||..|||||||||.||.|
RBAM_009670__ 432 GAAATCCACCGGACTTGTCGCAACTTCGGAGATTGCCCACGCCACCCCTG 481
BSNT_01620___ 479 CCGCATATGGCGCCCACAATGAATCACGGAAAAACATGGACCAAATCGCC 528
|.||||..||.|||||.||..||||.||.||.||||||||..|.|||||.
RBAM_009670__ 482 CGGCATTCGGAGCCCATAACAAATCCCGAAAGAACATGGATGACATCGCA 531
BSNT_01620___ 529 AACAGCTATATGGATGACAAAATAAAAGGCAAACATAAAATAGACGTGCT 578
|.||||||..|.||||||...||.||.||.|||||.|||.|.||.|||||
RBAM_009670__ 532 AGCAGCTACTTTGATGACCGCATCAACGGAAAACAGAAAGTCGATGTGCT 581
BSNT_01620___ 579 GCTCGGCGGCGGAAAATCTTATTTTAACCGCAAGGACAGAAACTTGACAA 628
.|||||.|||||.||.|...|.||||.|||.||.|||.|.||..|.||||
RBAM_009670__ 582 CCTCGGAGGCGGCAAGTTAAACTTTATCCGTAAAGACCGCAATGTAACAA 631
BSNT_01620___ 629 AGGAATTCAAACAAGCCGGCTACAGCTATGTGACAACTAAACAAGCATTG 678
||||.||||||.||||.||.||||||||.||||||.|.||||| |
RBAM_009670__ 632 AGGATTTCAAAAAAGCGGGATACAGCTACGTGACATCAAAACA------G 675
BSNT_01620___ 679 AAGAAAAATAAAGATC------AGCAGGTGCTCGGGCTTTTCGCAGAGGG 722
.||...||.||.|||| ||.||.|.|||||.||.||.||.||.||
RBAM_009670__ 676 GAGCTCAAAAAGGATCGTAACAAGAAGATTCTCGGCCTGTTTGCCGATGG 725
BSNT_01620___ 723 AGGGCTTGCTAAGGCGCTCGACCGTGACAGC-AAAACACCGTCTC-TCA- 769
.||.||.|..||.||..|||||| || .||||.|||||.| |||
RBAM_009670__ 726 CGGACTCGACAAAGCAATCGACC------GCTCAAACGCCGTCCCTTCAT 769
BSNT_01620___ 770 ---AAGACATG---ACGGTTTCAGCAATTGATCGCCTGAACCAAAATAAA 813
|||||||| |||| ||||.||.||..|.||||||.|.||||||
RBAM_009670__ 770 TAGAAGACATGACAACGG---CAGCGATCGACAGGCTGAACAAGAATAAA 816
BSNT_01620___ 814 AAAGGATTTTTCTTGATGGTCGAAGGGAGCCAGATTGACTGGGCGGCCCA 863
|||||.||||||||.|||||||||||.|||||.|||||||||||||..||
RBAM_009670__ 817 AAAGGGTTTTTCTTAATGGTCGAAGGCAGCCAAATTGACTGGGCGGGACA 866
BSNT_01620___ 864 TGACAATGATACAGTAGGAGCCATGAGCGAGGTTAAAGATTTTGAACAGG 913
|||||||||||.|||.||.||.|||||.||..|.||.|||||||||.|.|
RBAM_009670__ 867 TGACAATGATATAGTCGGCGCAATGAGTGAAATGAAGGATTTTGAAAAAG 916
BSNT_01620___ 914 CCTATAAAGCCGCGATTGAATTTGCGAAAAAAGACAAACATACACTTGTG 963
|.||||||||.|||||.|.||||||.|||||.|||||||||||.|||||.
RBAM_009670__ 917 CGTATAAAGCAGCGATCGCATTTGCCAAAAAGGACAAACATACGCTTGTC 966
BSNT_01620___ 964 ATTGCAACTGCTGACCATACAACCGGCGGCTTTACCATTGGCGCAAACGG 1013
.||||.||.|||||||||||.||||||||.||.||.||.|||||.||.|.
RBAM_009670__ 967 GTTGCCACGGCTGACCATACCACCGGCGGATTGACGATCGGCGCGAATGA 1016
BSNT_01620___ 1014 GGAAAAAAATTGGCACGCAGAACCGATTCTCTCCGCTAAGAAAACACCTG 1063
.||.|||||.|||||.|..|||||||||||..||||.||.|||||.||.|
RBAM_009670__ 1017 CGATAAAAACTGGCATGTTGAACCGATTCTTGCCGCAAAAAAAACTCCGG 1066
BSNT_01620___ 1064 AATTCATGGCCAAAAAAATCAGTGAAGGCAAGCCGGTTAAAGAT-----G 1108
.|||.|||||..|..||||||..|..|||||..|.|| || |
RBAM_009670__ 1067 CATTTATGGCTGACCAAATCAAAGCGGGCAAATCCGT-----ATCTTCCG 1111
BSNT_01620___ 1109 TGCTCGCCCGCTATGGCA-ATCTGAAA--GTCACATCTGAA----GAAAT 1151
||||.||.|||||| .|| |.|||||| |||| || |||||
RBAM_009670__ 1112 TGCTTGCGCGCTAT-ACAGACCTGAAATGGTCA------AAGGCGGAAAT 1154
BSNT_01620___ 1152 CAAA-AGCGTTGAAGCAGCTGC---ACAG---GCTGACAAAAGCAAAGGG 1194
|||| || .|.|||.|.||.|| |||| ||||||||.||||
RBAM_009670__ 1155 CAAACAG-ATCGAAACGGCCGCAAAACAGGATGCTGACAAGAGCA----- 1198
BSNT_01620___ 1195 GCCTACAAAGCCATCATCAAGATTTTTAATACTCGC----TCCAACAGCG 1240
.|||||||||.|||||.|||.|.|||||| || .|||||||||
RBAM_009670__ 1199 -TCTACAAAGCAATCATTAAGCTCTTTAAT----GCGAAAACCAACAGCG 1243
BSNT_01620___ 1241 GATGGACGAGTACCGATCATACCGGCGAAGAAGTACCGGTATACGCGTAC 1290
|.|||||.|....|||||||||.|||||||||||.||.||.|||||.|||
RBAM_009670__ 1244 GCTGGACAACCGGCGATCATACAGGCGAAGAAGTTCCCGTTTACGCATAC 1293
BSNT_01620___ 1291 GGCCCCGGAAAAGA-AAAATTCCGCGGATTGATT-AACAATACGGACCAG 1338
||.||.||||.||| ..|.||.||.||.|| || |||||.||.||||||
RBAM_009670__ 1294 GGTCCGGGAAGAGAGTCATTTACGGGGCTT--TTAAACAACACAGACCAG 1341
BSNT_01620___ 1339 GCAAACATCATATTTAAGAT-TTTAAAAACTGGAAAATAA 1377
||.||.|..||.|||.|.|| .|.|||.|| |||||||||
RBAM_009670__ 1342 GCCAAAAAGATCTTTCACATCCTGAAACAC-GGAAAATAA 1380
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