Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01619 and RBAM_009660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_01619___spoVR.1.9828.seq
# -bsequence dna-align/RBAM_009660___spoVR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01619___spoVR-RBAM_009660___spoVR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01619___spoVR-RBAM_009660___spoVR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01619___spoVR
# 2: RBAM_009660___spoVR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1420
# Identity: 1156/1420 (81.4%)
# Similarity: 1156/1420 (81.4%)
# Gaps: 26/1420 ( 1.8%)
# Score: 4729.5
#
#
#=======================================
BSNT_01619___ 1 TTGAACGCGGAGGAGAAGAAGGGATTACAGCGGGCAATTGAGGAAATTAC 50
||||||||||||||||..||.||.|||||||||||||||||||||||.||
RBAM_009660__ 1 TTGAACGCGGAGGAGACAAAAGGTTTACAGCGGGCAATTGAGGAAATAAC 50
BSNT_01619___ 51 CGAAATTGCAAAAGGATTCGGCCTTGATTTCTACCCGATGAGATATGAAA 100
|||.|||||.||.||.||||||||||||||||||||||||||||||||||
RBAM_009660__ 51 CGACATTGCGAAGGGTTTCGGCCTTGATTTCTACCCGATGAGATATGAAA 100
BSNT_01619___ 101 TCTGCCCGGCTGAAATTATTTATACATTTGGCGCGTACGGGATGCCGACA 150
|.||.||||||||.||||||||||||||.|||||||||||.||||||||.
RBAM_009660__ 101 TTTGTCCGGCTGAGATTATTTATACATTCGGCGCGTACGGCATGCCGACG 150
BSNT_01619___ 151 AGATTCAGCCACTGGAGCTTCGGCAAGCAGTTTCACAAGATGAAGCTGCA 200
|||||||||||.|||||.||||||||.||.||||||||||||||.||.||
RBAM_009660__ 151 AGATTCAGCCATTGGAGTTTCGGCAAACAATTTCACAAGATGAAACTCCA 200
BSNT_01619___ 201 CTATGATCTAGGGTTAAGTAAGATCTATGAGCTGGTCATTAACTCAGATC 250
.||||||||.||.||.||.||.||.|||||.||.||||||||.||..|.|
RBAM_009660__ 201 TTATGATCTCGGTTTGAGCAAAATTTATGAACTTGTCATTAATTCCAACC 250
BSNT_01619___ 251 CATGCTACGCTTTTTTGCTGGACAGCAACTCACTGATCCAAAATAAATTG 300
|.||||||||||||||||||||||||||.||.|||||||||||||||||.
RBAM_009660__ 251 CTTGCTACGCTTTTTTGCTGGACAGCAATTCGCTGATCCAAAATAAATTA 300
BSNT_01619___ 301 ATTGTCGCACACGTTCTTGCTCATTGCGATTTCTTCAAAAACAACTGCCG 350
|||||.||.||.||||||||.|||||.|||||.||||||.|.||||||||
RBAM_009660__ 301 ATTGTAGCCCATGTTCTTGCCCATTGTGATTTTTTCAAACATAACTGCCG 350
BSNT_01619___ 351 TTTCCAAAACACGAAGCGCGATATGGTGGAAAGCATGGCGGCAACAGCTG 400
.||.|||||.|||||.||.||.|||||.|||||.||||||||..|.||.|
RBAM_009660__ 351 CTTTCAAAATACGAACCGGGACATGGTTGAAAGTATGGCGGCTGCGGCGG 400
BSNT_01619___ 401 AACGGATAAAACACTATGAACAG-GTTCACGGGATAAAAGAAGTCGAATC 449
|.|||||.||.||.|||||| || .||||||||||||||||.||.||.||
RBAM_009660__ 401 AGCGGATTAAGCATTATGAA-AGAATTCACGGGATAAAAGAGGTGGAGTC 449
BSNT_01619___ 450 TTTTTTAGATGCAATCCTTTCGATTCAGGAGCATATCGATCCGTCGTTGG 499
.|||||||||||.||.||..||.|||||||||||||||||||||||.|.|
RBAM_009660__ 450 CTTTTTAGATGCCATTCTGGCGGTTCAGGAGCATATCGATCCGTCGCTCG 499
BSNT_01619___ 500 TCCGACCAAAGCTCCAATGGAGTGTGGATGATGAGGAAGAGGA-GATTGA 548
||.|.||.|||||.|..|||||.||.|||||.||.||.||||| || .||
RBAM_009660__ 500 TCAGGCCGAAGCTGCTGTGGAGCGTCGATGACGAAGAGGAGGACGA-AGA 548
BSNT_01619___ 549 AGAGGCAGC--CA-CGCCTTACGATGATCTATGGTCATTGGATGAAAAGA 595
|||..|.|| || ||||||||||||||.|||||..|.||||| |
RBAM_009660__ 549 AGAAACCGCGTCATCGCCTTACGATGATTTATGGGGAATGGAT------A 592
BSNT_01619___ 596 AACCGA--------AAAAACAAGTGAAAAAATCGAAAAAACCGTTCCCGC 637
|.|||| ||||| |||||||..||||||||||||.||||
RBAM_009660__ 593 AGCCGAAGCAGGTGAAAAA-----GAAAAAAGGGAAAAAACCGTTTCCGC 637
BSNT_01619___ 638 CGCGGCCTGAAAAAGATATCCTGCTTTTTATCGAGGAGCATTCCCGGGAG 687
|.|||||.|||||||||||.|||||.|||||||||||.|||||.||||||
RBAM_009660__ 638 CCCGGCCGGAAAAAGATATTCTGCTGTTTATCGAGGAACATTCGCGGGAG 687
BSNT_01619___ 688 CTGGAGCCATGGCAGCGTGATATATTAACGATGATGAGAGAGGAAATGCT 737
||.||.||.|||||||||||.||.|||||.|||||||||||.||||||||
RBAM_009660__ 688 CTTGAACCGTGGCAGCGTGACATTTTAACCATGATGAGAGAAGAAATGCT 737
BSNT_01619___ 738 TTATTTCTGGCCTCAGCTGGAAACCAAGATTATGAATGAGGGCTGGGCTT 787
.|||||||||||.|||||||||||.||.||.|||||.||.||||||||.|
RBAM_009660__ 738 GTATTTCTGGCCGCAGCTGGAAACGAAAATCATGAACGAAGGCTGGGCAT 787
BSNT_01619___ 788 CCTATTGGCACCAGCGAATTATACGTGAGCTTGATTTAACCTCTGATGAA 837
||||||||||.|||||.|||||.||.||||||||..|.||.||.||||||
RBAM_009660__ 788 CCTATTGGCATCAGCGGATTATCCGCGAGCTTGACCTGACTTCAGATGAA 837
BSNT_01619___ 838 GCGATCGAGTTCGCCAAGCTGAATGCAGGTGTCGTTCAGCCGTCCAAAAC 887
||.|||||.||.||.||.|||||.|||||.||.|||||||||||.|||||
RBAM_009660__ 838 GCCATCGAATTTGCGAAACTGAACGCAGGCGTTGTTCAGCCGTCAAAAAC 887
BSNT_01619___ 888 AGGCATTAATCCTTATTATTTAGGGCTAAAAATATTTGAAGACATTGAGG 937
.||.||.||.||.||||||||||||||.|||||.|||||||||||.||.|
RBAM_009660__ 888 GGGAATCAACCCGTATTATTTAGGGCTGAAAATTTTTGAAGACATCGAAG 937
BSNT_01619___ 938 AGAGGTACAACAACCCGACGGAGGAAATGAAGAAAATGGGCGTGCAGCCT 987
||.|.||..||||||||||.||.||||||||.||||..||.||..||||.
RBAM_009660__ 938 AGCGTTATGACAACCCGACAGATGAAATGAAAAAAACAGGAGTAAAGCCC 987
BSNT_01619___ 988 GACTCCGGCCGGGAGAAAATGTTTGAGGTCAGGGAGATTGAATCCGATAT 1037
|..|||||.||.|||||||||||||||||||||||.||||||||.|||||
RBAM_009660__ 988 GGTTCCGGACGCGAGAAAATGTTTGAGGTCAGGGAAATTGAATCGGATAT 1037
BSNT_01619___ 1038 CTCTTTCATCCGCAATTATTTAACCAAAGAATTAGTCATGCGCGAGGATC 1087
.||.||.||||||||||||||.||.|||||..|.||.|||||.||||||.
RBAM_009660__ 1038 ATCATTTATCCGCAATTATTTGACGAAAGATCTCGTGATGCGTGAGGATT 1087
BSNT_01619___ 1088 TTTATTTGTTTCAAAAACAGGGCCGAGATTATAAAATCATCGATAAACAG 1137
|.|||||.||.|||||.||||||.|.||.||||||.|.|||||.|||.|.
RBAM_009660__ 1088 TGTATTTATTCCAAAAGCAGGGCAGGGACTATAAAGTGATCGACAAAGAA 1137
BSNT_01619___ 1138 TGGAAGTCGGTGCGCGACCAGCTCGTAAGCATGCGGGTAAATGGCGGTTT 1187
||||||.|.||||||||.||||||||.|..||||||||.||.||.||.||
RBAM_009660__ 1138 TGGAAGGCCGTGCGCGATCAGCTCGTGAATATGCGGGTCAACGGGGGATT 1187
BSNT_01619___ 1188 TCCATATTTGACAGTAAACGATGGCGATTATATGAAAAATAACGAGCTCT 1237
|||.|||.||||.||.||.||.||.|||||..||||.|||||.|||||.|
RBAM_009660__ 1188 TCCTTATCTGACCGTCAATGACGGGGATTACCTGAAGAATAATGAGCTTT 1237
BSNT_01619___ 1238 ATATTAAGCATTGGTATGAAGGAATAGAGTTAGATTTGAAATATTTGGAG 1287
|||||||.|||||||||||.|||||.|||.|.|||.||||||||||||||
RBAM_009660__ 1238 ATATTAAACATTGGTATGAGGGAATTGAGCTTGATCTGAAATATTTGGAG 1287
BSNT_01619___ 1288 AAAGTGCTCCCTTATTTATTCCAGCTTTGGGGAAGAAGCGTGCACATTGA 1337
||||||||.||.|||.|.|.||||||.|||||.||.|||||||||||.||
RBAM_009660__ 1288 AAAGTGCTGCCGTATCTGTACCAGCTGTGGGGCAGGAGCGTGCACATCGA 1337
BSNT_01619___ 1338 GTCTGTGCTTGAGGATAAGGAAGTCATGTTTTCGTACGACGGAAAAGGTG 1387
.|||||.|||||.||.|..|||||.|||||||||||.|||||.|||||.|
RBAM_009660__ 1338 ATCTGTTCTTGAAGACAGAGAAGTGATGTTTTCGTATGACGGCAAAGGAG 1387
BSNT_01619___ 1388 TTCACCGCAGATATTTATAA 1407
|.|||||.||||||.|.|||
RBAM_009660__ 1388 TGCACCGGAGATATCTGTAA 1407
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