Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01618 and RBAM_009650

See Amino acid alignment / Visit BSNT_01618 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_01618___ygxB.1.9828.seq
#    -bsequence dna-align/RBAM_009650___ygxB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01618___ygxB-RBAM_009650___ygxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01618___ygxB-RBAM_009650___ygxB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01618___ygxB
# 2: RBAM_009650___ygxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1601
# Identity:    1136/1601 (71.0%)
# Similarity:  1136/1601 (71.0%)
# Gaps:         112/1601 ( 7.0%)
# Score: 3979.5
# 
#
#=======================================

BSNT_01618___      1 ------------------------------------------------TT      2
                                                                     ||
RBAM_009650__      1 GTGGGTAAAACACACACCATACCCCAAAAAGAAAAGGAGCGATTCTACTT     50

BSNT_01618___      3 GAATGTAGCAGACGTGTTTTCTTCTTATCTCAGTAAGCTGCCAAACGTAA     52
                     ||||..|||||||.||.||.|..|.||||||||.||.||.||.||..|.|
RBAM_009650__     51 GAATAAAGCAGACATGCTTACGACGTATCTCAGCAAACTCCCGAATCTGA    100

BSNT_01618___     53 TCATTGCTTTACTCGTCTTATTAATCGGCTGGGCTATTGCTAAAATCATT    102
                     ||||.||..|.||||||.|..|.||||||||||..|||||.|||||||||
RBAM_009650__    101 TCATCGCACTGCTCGTCCTGCTTATCGGCTGGGGCATTGCCAAAATCATT    150

BSNT_01618___    103 GAAAAAGCGGTATACAAAGGACTCAGC--AAAACAAAAATCGACGACAAG    150
                     ||||||||.|||||||||||.||  ||  |||||||||||||||||.|.|
RBAM_009650__    151 GAAAAAGCCGTATACAAAGGCCT--GCAAAAAACAAAAATCGACGATAGG    198

BSNT_01618___    151 CTCTTTGCTGGGAAAAAGCCTTCACGCTATTCCTCGGAAAAAGTCATAAG    200
                     ||.||.||.|..||||||||..|.|||||||||||.|||||||||||.||
RBAM_009650__    199 CTGTTCGCCGAAAAAAAGCCGGCGCGCTATTCCTCAGAAAAAGTCATCAG    248

BSNT_01618___    201 CAAGGTCGTTTATTTTATCGCACTGATCATCGTCTTTATTTTATTCTTTA    250
                     .||.|||.||||||||||||||.|.||||||||.||||||.|||||||||
RBAM_009650__    249 TAAAGTCATTTATTTTATCGCATTAATCATCGTTTTTATTCTATTCTTTA    298

BSNT_01618___    251 ACATTTTGCACCTGACAACAGTGGCATCGCCGTTTGTCAGTATGCTTTCG    300
                     |||||.||||.||||||||.|||||.|||||.||||||||.|||||.||.
RBAM_009650__    299 ACATTCTGCATCTGACAACCGTGGCTTCGCCTTTTGTCAGCATGCTGTCA    348

BSNT_01618___    301 GCGATTGCAGCCGCGATCCCAAGCGTGCTGAAAGCTGGACTCATTCTGCT    350
                     |||||..|.||.||..|.||.|||.|..|.|||||.||.||.||||||||
RBAM_009650__    349 GCGATAACGGCGGCTGTGCCGAGCATTTTAAAAGCCGGCCTGATTCTGCT    398

BSNT_01618___    351 GTTAGGATGGGCTGCAGCCTCTGTTTTAAGCTTCCTTGTCAAAAAAATCG    400
                     |||.||.|||||.||.||.||..||||.||||..||.||| ||||||.||
RBAM_009650__    399 GTTGGGCTGGGCGGCCGCTTCGCTTTTCAGCTATCTCGTC-AAAAAAGCG    447

BSNT_01618___    401 GG-ATGAA----GCTGAACACGAG-----TGACAAACTGCGCAAGTGGAA    440
                     || |||||    ||||||.||| |     |.|.|||.||..|||      
RBAM_009650__    448 GGCATGAAACTCGCTGAAAACG-GCCGGCTCAGAAAATGGACAA------    490

BSNT_01618___    441 TTTGGTGTCTGAAGGAAA----AGATATTCACCAG-GCTGTCAATACCGC    485
                       ||||||||||||  ||    |||   |.|.||| .|.||.|...||||
RBAM_009650__    491 --TGGTGTCTGAAG--AAGCGGAGA---TGAGCAGATCCGTTACGGCCGC    533

BSNT_01618___    486 TTCACAAATTGTCTTTTATCTCGTGCTGCTTGTTTTTCTGCCAGGGGTCT    535
                     |||||.|||.||.|||||..||||..||||..|.||.|||||.||.||||
RBAM_009650__    534 TTCACGAATCGTTTTTTACTTCGTCTTGCTCTTGTTCCTGCCCGGCGTCT    583

BSNT_01618___    536 TATCTTCTTTGAAAATCAGCGGCATTTCAGGTCCTTTTACAAATATGATG    585
                     |..|..||.|..||||||||||..|.|||||.||.||||||||||||||.
RBAM_009650__    584 TGGCCGCTCTCCAAATCAGCGGAGTATCAGGGCCGTTTACAAATATGATC    633

BSNT_01618___    586 GAAAGCGTGCTCGCTTTTCTGCCGAAATTATTTGCAGCGGCGCTTATCGT    635
                     .|||||||..|..|.|||.|.|||||||||||.||.||||||||.||.||
RBAM_009650__    634 CAAAGCGTTTTGTCCTTTATACCGAAATTATTCGCCGCGGCGCTGATTGT    683

BSNT_01618___    636 ATTAATCGGCTGGCTTGTTGCCCGCCTTGTCCGTGATATCATTACGAATT    685
                     .|||||||||||||||||||||||.||.||.|||||||||.|.||.||.|
RBAM_009650__    684 TTTAATCGGCTGGCTTGTTGCCCGTCTCGTTCGTGATATCGTCACAAACT    733

BSNT_01618___    686 TCCTTGCAAGCATCGGCACGGAAAGATTCGCGGCACGTATGGGTTTATCA    735
                     |.||.||.||.||||||||||||||..||||.|||||||||||..|.||.
RBAM_009650__    734 TTCTGGCGAGTATCGGCACGGAAAGGCTCGCCGCACGTATGGGGCTTTCT    783

BSNT_01618___    736 ATTTACTTAAAAGACACAAGCCTTTCAGCAGTCATCGGAACAATCGCTTA    785
                     ||.|||.|.||.||.||||||||.||.|||.||||||||||.||.|..||
RBAM_009650__    784 ATATACCTGAAGGATACAAGCCTGTCGGCAATCATCGGAACGATTGTCTA    833

BSNT_01618___    786 TGTGCTGATTATGATTCCGGTGGTCATTTCAGCGCTTGATCAGCTGGATG    835
                     .|||||||||.|.|||||||||.|||||||.||||||||.|.|||.||||
RBAM_009650__    834 CGTGCTGATTTTCATTCCGGTGATCATTTCTGCGCTTGACCGGCTTGATG    883

BSNT_01618___    836 TCGCCGGCATTTCAAAACCAGCTGTC-TCTATGCTGAATACGATTTTAAA    884
                     |.||.||.|||||..||||.|| ||| .|.||||||.|.|||.|.||.|.
RBAM_009650__    884 TGGCGGGTATTTCTGAACCGGC-GTCAGCCATGCTGCACACGGTCTTCAC    932

BSNT_01618___    885 CATGCTTCCGAACATCATGATTGCCATCGTGCTTGTATTAGCGGGTATCT    934
                     .|||||.||.||.|||||.||.|..||||||||..|..|.||.||.||||
RBAM_009650__    933 AATGCTCCCTAATATCATCATCGGTATCGTGCTGATCATCGCCGGCATCT    982

BSNT_01618___    935 GGGCAGGAAAATGGGTGAAATCCATGGTGTCCGGACTGCTCCATCGCGCA    984
                     ||...|||||||||||.||...|||.||.|||||.||..|.||.||.||.
RBAM_009650__    983 GGATCGGAAAATGGGTCAACAGCATTGTATCCGGGCTCTTGCACCGGGCC   1032

BSNT_01618___    985 GGCTTTGATTCTGTCTTAGGGAAAATGGGCATGGAA---GCCGGAACGCC   1031
                     ||.||.||.|||.|..|.||.||||||||..|.|||   .|.||.||.| 
RBAM_009650__   1033 GGTTTCGACTCTCTTCTCGGTAAAATGGGTTTTGAACAGACGGGTACCC-   1081

BSNT_01618___   1032 TGCAAAGCTGTC-CTTGTCTCAAGTTGTCGGTATGATTGCGCAAATCATT   1080
                       |.||||||.| ||| |||||....|||||.|||||||..||.|||||.
RBAM_009650__   1082 --CGAAGCTGACGCTT-TCTCAGACGGTCGGCATGATTGTTCAGATCATC   1128

BSNT_01618___   1081 GTCATTCTGCTCTTTACAGCTGAGGCGCTTCAAATTGTTCGGCTGCACTT   1130
                     .||.|.|||||||||||.||.||||||||.||..||||||..||..|.||
RBAM_009650__   1129 ATCGTCCTGCTCTTTACGGCAGAGGCGCTGCAGCTTGTTCATCTCGAATT   1178

BSNT_01618___   1131 CCTCGTAGAAATTGCCACTGGCATCATCGCGTATCTGCCGAATGTCCTTG   1180
                     .|||||.|..||.||.||.||.||.|||||.||.|||||.|||||.||.|
RBAM_009650__   1179 TCTCGTCGTTATCGCAACCGGTATTATCGCTTACCTGCCTAATGTTCTGG   1228

BSNT_01618___   1181 TCGCCGTATTCATTCTCGGACTCGGCCTTTACGCAGGAGAATTGGTGAGA   1230
                     .|||.|||||.|||||||||.||||.||||..||.|||.|..|.||.||.
RBAM_009650__   1229 CCGCTGTATTTATTCTCGGAATCGGACTTTTGGCCGGACAGCTCGTCAGC   1278

BSNT_01618___   1231 AAAGTGCTCTCAAGCATGATAAAAGGCCAGGAATTCA-AGTCTTTAGCGC   1279
                     |...||||..|..|||||.|.|..||..||||||||| |.|| .|.||||
RBAM_009650__   1279 AGGCTGCTTGCCGGCATGCTGAGCGGAAAGGAATTCAGATTC-CTGGCGC   1327

BSNT_01618___   1280 CTATTGCTAAATATACGATTATCGCACTTGCTTTCTTTATGGCCCTGGAT   1329
                     |..||||.||||||||.||||||.|.|||.|..||||||||||.||||||
RBAM_009650__   1328 CGCTTGCGAAATATACCATTATCACTCTTTCAATCTTTATGGCGCTGGAT   1377

BSNT_01618___   1330 CAGCTTGGTGTCGCTGCGACA--ATCGTCAATTCCGCGTTTATCATCGTT   1377
                     |||||.||||||||  |||||  |||||.|||.||||||||||..|..||
RBAM_009650__   1378 CAGCTCGGTGTCGC--CGACACGATCGTAAATGCCGCGTTTATTCTGATT   1425

BSNT_01618___   1378 CTTAGCGGCTTCGCACTCGCTTTCGGTTTATCCTTCGGCCTTGGCGGTAA   1427
                     ||..||||.|||||.||.||.|||||..|.||.|||||.||||||||.||
RBAM_009650__   1426 CTGGGCGGTTTCGCGCTTGCCTTCGGACTTTCATTCGGTCTTGGCGGAAA   1475

BSNT_01618___   1428 GGATTTTGCATCACGTTATCTGTCTACATTTGAACGCAAAATGCAAAACA   1477
                     .||.|||||.||.||||||||..|.|.|||.||.||||||||..|||| |
RBAM_009650__   1476 AGAATTTGCCTCCCGTTATCTCGCAAAATTGGATCGCAAAATTGAAAA-A   1524

BSNT_01618___   1478 CAGAAATCGAAAAAAACCG-TAAAAACCAAAATCCGCCGAATGACATGTA   1526
                     ||..|||||         | |.|..|.|..||.|||||| |||.|  .||
RBAM_009650__   1525 CATCAATCG---------GCTGACGATCGGAAGCCGCCG-ATGTC--TTA   1562

BSNT_01618___   1527 A   1527
                     |
RBAM_009650__   1563 A   1563


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