Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01618 and RBAM_009650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_01618___ygxB.1.9828.seq
# -bsequence dna-align/RBAM_009650___ygxB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01618___ygxB-RBAM_009650___ygxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01618___ygxB-RBAM_009650___ygxB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01618___ygxB
# 2: RBAM_009650___ygxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1601
# Identity: 1136/1601 (71.0%)
# Similarity: 1136/1601 (71.0%)
# Gaps: 112/1601 ( 7.0%)
# Score: 3979.5
#
#
#=======================================
BSNT_01618___ 1 ------------------------------------------------TT 2
||
RBAM_009650__ 1 GTGGGTAAAACACACACCATACCCCAAAAAGAAAAGGAGCGATTCTACTT 50
BSNT_01618___ 3 GAATGTAGCAGACGTGTTTTCTTCTTATCTCAGTAAGCTGCCAAACGTAA 52
||||..|||||||.||.||.|..|.||||||||.||.||.||.||..|.|
RBAM_009650__ 51 GAATAAAGCAGACATGCTTACGACGTATCTCAGCAAACTCCCGAATCTGA 100
BSNT_01618___ 53 TCATTGCTTTACTCGTCTTATTAATCGGCTGGGCTATTGCTAAAATCATT 102
||||.||..|.||||||.|..|.||||||||||..|||||.|||||||||
RBAM_009650__ 101 TCATCGCACTGCTCGTCCTGCTTATCGGCTGGGGCATTGCCAAAATCATT 150
BSNT_01618___ 103 GAAAAAGCGGTATACAAAGGACTCAGC--AAAACAAAAATCGACGACAAG 150
||||||||.|||||||||||.|| || |||||||||||||||||.|.|
RBAM_009650__ 151 GAAAAAGCCGTATACAAAGGCCT--GCAAAAAACAAAAATCGACGATAGG 198
BSNT_01618___ 151 CTCTTTGCTGGGAAAAAGCCTTCACGCTATTCCTCGGAAAAAGTCATAAG 200
||.||.||.|..||||||||..|.|||||||||||.|||||||||||.||
RBAM_009650__ 199 CTGTTCGCCGAAAAAAAGCCGGCGCGCTATTCCTCAGAAAAAGTCATCAG 248
BSNT_01618___ 201 CAAGGTCGTTTATTTTATCGCACTGATCATCGTCTTTATTTTATTCTTTA 250
.||.|||.||||||||||||||.|.||||||||.||||||.|||||||||
RBAM_009650__ 249 TAAAGTCATTTATTTTATCGCATTAATCATCGTTTTTATTCTATTCTTTA 298
BSNT_01618___ 251 ACATTTTGCACCTGACAACAGTGGCATCGCCGTTTGTCAGTATGCTTTCG 300
|||||.||||.||||||||.|||||.|||||.||||||||.|||||.||.
RBAM_009650__ 299 ACATTCTGCATCTGACAACCGTGGCTTCGCCTTTTGTCAGCATGCTGTCA 348
BSNT_01618___ 301 GCGATTGCAGCCGCGATCCCAAGCGTGCTGAAAGCTGGACTCATTCTGCT 350
|||||..|.||.||..|.||.|||.|..|.|||||.||.||.||||||||
RBAM_009650__ 349 GCGATAACGGCGGCTGTGCCGAGCATTTTAAAAGCCGGCCTGATTCTGCT 398
BSNT_01618___ 351 GTTAGGATGGGCTGCAGCCTCTGTTTTAAGCTTCCTTGTCAAAAAAATCG 400
|||.||.|||||.||.||.||..||||.||||..||.||| ||||||.||
RBAM_009650__ 399 GTTGGGCTGGGCGGCCGCTTCGCTTTTCAGCTATCTCGTC-AAAAAAGCG 447
BSNT_01618___ 401 GG-ATGAA----GCTGAACACGAG-----TGACAAACTGCGCAAGTGGAA 440
|| ||||| ||||||.||| | |.|.|||.||..|||
RBAM_009650__ 448 GGCATGAAACTCGCTGAAAACG-GCCGGCTCAGAAAATGGACAA------ 490
BSNT_01618___ 441 TTTGGTGTCTGAAGGAAA----AGATATTCACCAG-GCTGTCAATACCGC 485
|||||||||||| || ||| |.|.||| .|.||.|...||||
RBAM_009650__ 491 --TGGTGTCTGAAG--AAGCGGAGA---TGAGCAGATCCGTTACGGCCGC 533
BSNT_01618___ 486 TTCACAAATTGTCTTTTATCTCGTGCTGCTTGTTTTTCTGCCAGGGGTCT 535
|||||.|||.||.|||||..||||..||||..|.||.|||||.||.||||
RBAM_009650__ 534 TTCACGAATCGTTTTTTACTTCGTCTTGCTCTTGTTCCTGCCCGGCGTCT 583
BSNT_01618___ 536 TATCTTCTTTGAAAATCAGCGGCATTTCAGGTCCTTTTACAAATATGATG 585
|..|..||.|..||||||||||..|.|||||.||.||||||||||||||.
RBAM_009650__ 584 TGGCCGCTCTCCAAATCAGCGGAGTATCAGGGCCGTTTACAAATATGATC 633
BSNT_01618___ 586 GAAAGCGTGCTCGCTTTTCTGCCGAAATTATTTGCAGCGGCGCTTATCGT 635
.|||||||..|..|.|||.|.|||||||||||.||.||||||||.||.||
RBAM_009650__ 634 CAAAGCGTTTTGTCCTTTATACCGAAATTATTCGCCGCGGCGCTGATTGT 683
BSNT_01618___ 636 ATTAATCGGCTGGCTTGTTGCCCGCCTTGTCCGTGATATCATTACGAATT 685
.|||||||||||||||||||||||.||.||.|||||||||.|.||.||.|
RBAM_009650__ 684 TTTAATCGGCTGGCTTGTTGCCCGTCTCGTTCGTGATATCGTCACAAACT 733
BSNT_01618___ 686 TCCTTGCAAGCATCGGCACGGAAAGATTCGCGGCACGTATGGGTTTATCA 735
|.||.||.||.||||||||||||||..||||.|||||||||||..|.||.
RBAM_009650__ 734 TTCTGGCGAGTATCGGCACGGAAAGGCTCGCCGCACGTATGGGGCTTTCT 783
BSNT_01618___ 736 ATTTACTTAAAAGACACAAGCCTTTCAGCAGTCATCGGAACAATCGCTTA 785
||.|||.|.||.||.||||||||.||.|||.||||||||||.||.|..||
RBAM_009650__ 784 ATATACCTGAAGGATACAAGCCTGTCGGCAATCATCGGAACGATTGTCTA 833
BSNT_01618___ 786 TGTGCTGATTATGATTCCGGTGGTCATTTCAGCGCTTGATCAGCTGGATG 835
.|||||||||.|.|||||||||.|||||||.||||||||.|.|||.||||
RBAM_009650__ 834 CGTGCTGATTTTCATTCCGGTGATCATTTCTGCGCTTGACCGGCTTGATG 883
BSNT_01618___ 836 TCGCCGGCATTTCAAAACCAGCTGTC-TCTATGCTGAATACGATTTTAAA 884
|.||.||.|||||..||||.|| ||| .|.||||||.|.|||.|.||.|.
RBAM_009650__ 884 TGGCGGGTATTTCTGAACCGGC-GTCAGCCATGCTGCACACGGTCTTCAC 932
BSNT_01618___ 885 CATGCTTCCGAACATCATGATTGCCATCGTGCTTGTATTAGCGGGTATCT 934
.|||||.||.||.|||||.||.|..||||||||..|..|.||.||.||||
RBAM_009650__ 933 AATGCTCCCTAATATCATCATCGGTATCGTGCTGATCATCGCCGGCATCT 982
BSNT_01618___ 935 GGGCAGGAAAATGGGTGAAATCCATGGTGTCCGGACTGCTCCATCGCGCA 984
||...|||||||||||.||...|||.||.|||||.||..|.||.||.||.
RBAM_009650__ 983 GGATCGGAAAATGGGTCAACAGCATTGTATCCGGGCTCTTGCACCGGGCC 1032
BSNT_01618___ 985 GGCTTTGATTCTGTCTTAGGGAAAATGGGCATGGAA---GCCGGAACGCC 1031
||.||.||.|||.|..|.||.||||||||..|.||| .|.||.||.|
RBAM_009650__ 1033 GGTTTCGACTCTCTTCTCGGTAAAATGGGTTTTGAACAGACGGGTACCC- 1081
BSNT_01618___ 1032 TGCAAAGCTGTC-CTTGTCTCAAGTTGTCGGTATGATTGCGCAAATCATT 1080
|.||||||.| ||| |||||....|||||.|||||||..||.|||||.
RBAM_009650__ 1082 --CGAAGCTGACGCTT-TCTCAGACGGTCGGCATGATTGTTCAGATCATC 1128
BSNT_01618___ 1081 GTCATTCTGCTCTTTACAGCTGAGGCGCTTCAAATTGTTCGGCTGCACTT 1130
.||.|.|||||||||||.||.||||||||.||..||||||..||..|.||
RBAM_009650__ 1129 ATCGTCCTGCTCTTTACGGCAGAGGCGCTGCAGCTTGTTCATCTCGAATT 1178
BSNT_01618___ 1131 CCTCGTAGAAATTGCCACTGGCATCATCGCGTATCTGCCGAATGTCCTTG 1180
.|||||.|..||.||.||.||.||.|||||.||.|||||.|||||.||.|
RBAM_009650__ 1179 TCTCGTCGTTATCGCAACCGGTATTATCGCTTACCTGCCTAATGTTCTGG 1228
BSNT_01618___ 1181 TCGCCGTATTCATTCTCGGACTCGGCCTTTACGCAGGAGAATTGGTGAGA 1230
.|||.|||||.|||||||||.||||.||||..||.|||.|..|.||.||.
RBAM_009650__ 1229 CCGCTGTATTTATTCTCGGAATCGGACTTTTGGCCGGACAGCTCGTCAGC 1278
BSNT_01618___ 1231 AAAGTGCTCTCAAGCATGATAAAAGGCCAGGAATTCA-AGTCTTTAGCGC 1279
|...||||..|..|||||.|.|..||..||||||||| |.|| .|.||||
RBAM_009650__ 1279 AGGCTGCTTGCCGGCATGCTGAGCGGAAAGGAATTCAGATTC-CTGGCGC 1327
BSNT_01618___ 1280 CTATTGCTAAATATACGATTATCGCACTTGCTTTCTTTATGGCCCTGGAT 1329
|..||||.||||||||.||||||.|.|||.|..||||||||||.||||||
RBAM_009650__ 1328 CGCTTGCGAAATATACCATTATCACTCTTTCAATCTTTATGGCGCTGGAT 1377
BSNT_01618___ 1330 CAGCTTGGTGTCGCTGCGACA--ATCGTCAATTCCGCGTTTATCATCGTT 1377
|||||.|||||||| ||||| |||||.|||.||||||||||..|..||
RBAM_009650__ 1378 CAGCTCGGTGTCGC--CGACACGATCGTAAATGCCGCGTTTATTCTGATT 1425
BSNT_01618___ 1378 CTTAGCGGCTTCGCACTCGCTTTCGGTTTATCCTTCGGCCTTGGCGGTAA 1427
||..||||.|||||.||.||.|||||..|.||.|||||.||||||||.||
RBAM_009650__ 1426 CTGGGCGGTTTCGCGCTTGCCTTCGGACTTTCATTCGGTCTTGGCGGAAA 1475
BSNT_01618___ 1428 GGATTTTGCATCACGTTATCTGTCTACATTTGAACGCAAAATGCAAAACA 1477
.||.|||||.||.||||||||..|.|.|||.||.||||||||..|||| |
RBAM_009650__ 1476 AGAATTTGCCTCCCGTTATCTCGCAAAATTGGATCGCAAAATTGAAAA-A 1524
BSNT_01618___ 1478 CAGAAATCGAAAAAAACCG-TAAAAACCAAAATCCGCCGAATGACATGTA 1526
||..||||| | |.|..|.|..||.|||||| |||.| .||
RBAM_009650__ 1525 CATCAATCG---------GCTGACGATCGGAAGCCGCCG-ATGTC--TTA 1562
BSNT_01618___ 1527 A 1527
|
RBAM_009650__ 1563 A 1563
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