Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01613 and RBAM_009630

See Amino acid alignment / Visit BSNT_01613 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_01613___lytF.1.9828.seq
#    -bsequence dna-align/RBAM_009630___lytF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01613___lytF-RBAM_009630___lytF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01613___lytF-RBAM_009630___lytF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01613___lytF
# 2: RBAM_009630___lytF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity:    1064/1557 (68.3%)
# Similarity:  1064/1557 (68.3%)
# Gaps:         198/1557 (12.7%)
# Score: 3727.5
# 
#
#=======================================

BSNT_01613___      1 ATGAAAAAGAAATTAGCAGCAGGGCTGACAGCATCTGCGATTGTCGGCAC     50
                     ||||||||.||..||||.|..||..||||.|||||||||||.|||||..|
RBAM_009630__      1 ATGAAAAAAAAGGTAGCGGTCGGTTTGACTGCATCTGCGATCGTCGGGTC     50

BSNT_01613___     51 AACTTTAGCAGTGACACCAGCTGAAGCAGCAACGATTAAGGTCAAAAGCG    100
                     ..|.|||||.||.|||||.||.||||||..||||||||||||.|||||||
RBAM_009630__     51 TGCGTTAGCTGTAACACCGGCAGAAGCACAAACGATTAAGGTTAAAAGCG    100

BSNT_01613___    101 GAGATTCTTTATGGAAACTGGCCCAAACCTATAACACAAGTGTGGCGGCC    150
                     |||||||.||||||||.||.|||||||.|||.||.||.||.||||..|||
RBAM_009630__    101 GAGATTCATTATGGAAGCTTGCCCAAAACTACAATACGAGCGTGGATGCC    150

BSNT_01613___    151 CTCACATCCGCCAATCATCTTTCGA----CTACTGTTCTGTCGATCGGCC    196
                     .|.|||||.||.||||||||    |    |.||.|||.|.||.|||||.|
RBAM_009630__    151 ATTACATCAGCGAATCATCT----AAAATCCACCGTTATTTCTATCGGGC    196

BSNT_01613___    197 AGACGCTTACTATTCCAGGCAGCAAATC---------CAGCA------CT    231
                     ||||.||.|..|||||...|.|||||||         |||||      |.
RBAM_009630__    197 AGACACTCAACATTCCTAACGGCAAATCAGATTCCGGCAGCAAAAAGCCA    246

BSNT_01613___    232 TCTTCATCTACTTCAAGCTCAACAACCAAGAAGAGCGGAAGTTCT-----    276
                     ||||||                     |||||.|||||.|...||     
RBAM_009630__    247 TCTTCA---------------------AAGAACAGCGGCACGACTAAAAG    275

BSNT_01613___    277 -GTTTACACAGTGAAAAGCGGAGATTCACTTTGGCTGATCGCAAATGAGT    325
                      |||||.||||||||||||||.||.||.||.||||||||||||..|||.|
RBAM_009630__    276 CGTTTATACAGTGAAAAGCGGCGACTCGCTGTGGCTGATCGCATCTGATT    325

BSNT_01613___    326 TTAAAATGACGGTGCAGGAACTGAAAAAATTAAACGGACTAAGCAGCGAT    375
                     ||||||||.|.||.|||||||||||||||||.|||||.||.|..|||||.
RBAM_009630__    326 TTAAAATGTCCGTACAGGAACTGAAAAAATTGAACGGTCTGACAAGCGAC    375

BSNT_01613___    376 TTAATTCGTGCTGGGCAGAAATTAAAGGTGTCCGGTACTGTTTCTTCAAG    425
                     |||||.||.||.||.|||||..|..|.|||.|.||.|..|||||.|||||
RBAM_009630__    376 TTAATCCGCGCCGGACAGAAGCTGCAAGTGACGGGGAAAGTTTCCTCAAG    425

BSNT_01613___    426 TTC----CAGTACAAAAA---------GCAGTTCCAATAAGAGTTCAAGC    462
                     ..|    ||| |.|||||         ||||                   
RBAM_009630__    426 CACCGATCAG-AAAAAAACCACGCCGGGCAG-------------------    455

BSNT_01613___    463 TCCAGTTCAAAAAGCAGTTCTAATAAGAGTTCAAGTTCCTCATCTTCTAC    512
                       |||.|||||.|||||....|||.||         ||.||||||||  |
RBAM_009630__    456 --CAGCTCAAACAGCAGCAAAAATCAG---------TCATCATCTTC--C    492

BSNT_01613___    513 GGGAACATATAAGGTGCAGCTTGGAGATTCACTCTGGAAAATTGCAAACA    562
                     ||| ||.|||||.||..|.||.||.||||||||.|||||.||.|||||||
RBAM_009630__    493 GGG-ACGTATAAAGTCAAACTCGGCGATTCACTATGGAAGATCGCAAACA    541

BSNT_01613___    563 AAGTCAATATGTCCATCGCTGAATTGAAGGTCTTGAACAACTTAAAATCA    612
                     ..|||||||||.||||.||.|||.|.||.||.||.||||||||||||.|.
RBAM_009630__    542 GCGTCAATATGACCATTGCGGAACTTAAAGTATTAAACAACTTAAAAACG    591

BSNT_01613___    613 GACACCATTTACGTGAATCAGGTGTTGAAAACAAAATCAAGCGGC-TCT-    660
                     ||.||.||.|||||.||.||.||..|||||||||||..|| ||.| ||| 
RBAM_009630__    592 GATACGATCTACGTAAACCAAGTCCTGAAAACAAAAGGAA-CGTCTTCTT    640

BSNT_01613___    661 -----GATACGTCTTCTAAAGACACTTCATCCAAATCGAACCAAACTTCA    705
                          .|.|||.|.||.|||||||.||||         |||||||.|   
RBAM_009630__    641 CGGGAAACACGCCGTCAAAAGACAATTCA---------AACCAAAAT---    678

BSNT_01613___    706 GCAACAACTAAA--------------TATACCGTTAAAAGCGGTGATTCA    741
                       ||.|||.|.|              |||||.||.||||||||.||.|||
RBAM_009630__    679 --AAAAACCAGACGCAAACGTCCTCTTATACAGTAAAAAGCGGAGACTCA    726

BSNT_01613___    742 CTTTGGAAAATCGCAAACAACTATAACCTGTCTGTACAGCAAATCCGAAA    791
                     ||.|||||||||||||||...||.||..||.|.||.|||||||||.|||.
RBAM_009630__    727 CTCTGGAAAATCGCAAACGCATACAATATGACGGTTCAGCAAATCAGAAG    776

BSNT_01613___    792 TATCAACAATCTGAAATCAGATGTGCTGTACGTTGGACAAGTATTGAAGC    841
                     .||||||||.||||..|||||..|||||...||.||||||||..|.||||
RBAM_009630__    777 CATCAACAAACTGACGTCAGACATGCTGCGGGTCGGACAAGTGCTTAAGC    826

BSNT_01613___    842 TGAC----AGGTAAAGCATCTTCAGGCTCTTCATCATCGTCGTCTTCTTC    887
                     ||||    |.||    |||||||.||||||         ||||||||..|
RBAM_009630__    827 TGACCAAAACGT----CATCTTCCGGCTCT---------TCGTCTTCACC    863

BSNT_01613___    888 GTCAAATGCAAGC------------TCAGGCACGACGACTACATACACAG    925
                     |||||.|.|.|.|            .||||.|..||.||||||||.||.|
RBAM_009630__    864 GTCAACTCCGAACCAGTCCGGAGATACAGGGAAAACCACTACATATACCG    913

BSNT_01613___    926 TGAAAAGCGGTGATTCCTTATGGGTGATTGCTCAAAAATTTAATGTAACA    975
                     ||||||||||.|||||.|||||||||||.||.|||||.||.|||||.||.
RBAM_009630__    914 TGAAAAGCGGGGATTCTTTATGGGTGATCGCCCAAAAGTTCAATGTGACC    963

BSNT_01613___    976 GCTCAGCAGATTCGTGAGAAAAACAATTTAAAAACGGATG-TCTTGCAGG   1024
                     ||.||||||||.||.||||||||||||.|.|||||.|||| |||| ||..
RBAM_009630__    964 GCCCAGCAGATCCGCGAGAAAAACAATCTGAAAACAGATGTTCTT-CAAA   1012

BSNT_01613___   1025 TTGGCCAAAAGCTGGTCATTTCCGG---------AAAAGCTTCATC--AT   1063
                     |.||.|||||||||...|||.||||         |||..|..||.|  | 
RBAM_009630__   1013 TCGGACAAAAGCTGACGATTACCGGGCAGCAGACAAACACGACACCGAA-   1061

BSNT_01613___   1064 CGTCTTCA-TCCGGTTCTTCAAACAC------CACCAGCTCAACGAGTGC   1106
                          ||| |||||      .|||||      |||..|.|||||.||.||
RBAM_009630__   1062 -----TCAGTCCGG------CAACACAGGCGGCACAGGTTCAACAAGCGC   1100

BSNT_01613___   1107 GAAGATTAACACAATGATTTCG--GCCGCTAAAGCGCAGCTTGGGGTTCC   1154
                     .||||||||...|||||  |||  |||||.|||||.|||||.||.||.||
RBAM_009630__   1101 AAAGATTAATGTAATGA--TCGATGCCGCAAAAGCTCAGCTGGGCGTACC   1148

BSNT_01613___   1155 GTATCGCTGGGGAGGCACGACACCGTCCGGGTTTGACTGCAGCGGATTCA   1204
                     ||||...|||||.||.|||||.|||...||.||||||||||||||.||||
RBAM_009630__   1149 GTATGTATGGGGCGGGACGACGCCGAGAGGCTTTGACTGCAGCGGTTTCA   1198

BSNT_01613___   1205 TTTACTATGTACTGAACAAAGTCACATCCGTATCTAGATTAACGGCAGCG   1254
                     ||||.||.||.||.||.||.|||||.||.|||||.|||.|..|.||.||.
RBAM_009630__   1199 TTTATTACGTTCTCAATAAGGTCACTTCTGTATCCAGACTTTCAGCCGCA   1248

BSNT_01613___   1255 GGATATTGGAACACAATGAAATCAGTTAGCCAGCCTGCTGTCGGAGATTT   1304
                     ||.||.|||||.||.||||.||||||.||||||||.||.|||||.||.||
RBAM_009630__   1249 GGCTACTGGAATACGATGACATCAGTCAGCCAGCCGGCGGTCGGTGACTT   1298

BSNT_01613___   1305 CGTTTTCTTTACAACATATAAAGCCGGCCCTTCCCACGTCGGAATTTACC   1354
                     .||.||.||..||||.|||||||||||.||||||||||||||.|||||.|
RBAM_009630__   1299 TGTCTTTTTCTCAACTTATAAAGCCGGACCTTCCCACGTCGGTATTTATC   1348

BSNT_01613___   1355 TAGGCAACGGGGAATTCATAAATGCCAACGATTCCGGAGTTGTCATTTCC   1404
                     |.||.|||||..|.||.||.||||||||||||||.||.||.||.||||||
RBAM_009630__   1349 TCGGGAACGGCCAGTTTATTAATGCCAACGATTCGGGTGTCGTTATTTCC   1398

BSNT_01613___   1405 AATATGAACAACTCTTACTGGAAACAGCGCTATCTCGGTGCAAAACGATA   1454
                     |..||||||||.||.||.||||||||||||||.|||||.||||||||.|.
RBAM_009630__   1399 AGCATGAACAATTCCTATTGGAAACAGCGCTACCTCGGCGCAAAACGTTT   1448

BSNT_01613___   1455 TTTCTAA   1461
                     .||||.|
RBAM_009630__   1449 CTTCTGA   1455


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