Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01613 and RBAM_009630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01613___lytF.1.9828.seq
# -bsequence dna-align/RBAM_009630___lytF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01613___lytF-RBAM_009630___lytF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01613___lytF-RBAM_009630___lytF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01613___lytF
# 2: RBAM_009630___lytF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity: 1064/1557 (68.3%)
# Similarity: 1064/1557 (68.3%)
# Gaps: 198/1557 (12.7%)
# Score: 3727.5
#
#
#=======================================
BSNT_01613___ 1 ATGAAAAAGAAATTAGCAGCAGGGCTGACAGCATCTGCGATTGTCGGCAC 50
||||||||.||..||||.|..||..||||.|||||||||||.|||||..|
RBAM_009630__ 1 ATGAAAAAAAAGGTAGCGGTCGGTTTGACTGCATCTGCGATCGTCGGGTC 50
BSNT_01613___ 51 AACTTTAGCAGTGACACCAGCTGAAGCAGCAACGATTAAGGTCAAAAGCG 100
..|.|||||.||.|||||.||.||||||..||||||||||||.|||||||
RBAM_009630__ 51 TGCGTTAGCTGTAACACCGGCAGAAGCACAAACGATTAAGGTTAAAAGCG 100
BSNT_01613___ 101 GAGATTCTTTATGGAAACTGGCCCAAACCTATAACACAAGTGTGGCGGCC 150
|||||||.||||||||.||.|||||||.|||.||.||.||.||||..|||
RBAM_009630__ 101 GAGATTCATTATGGAAGCTTGCCCAAAACTACAATACGAGCGTGGATGCC 150
BSNT_01613___ 151 CTCACATCCGCCAATCATCTTTCGA----CTACTGTTCTGTCGATCGGCC 196
.|.|||||.||.|||||||| | |.||.|||.|.||.|||||.|
RBAM_009630__ 151 ATTACATCAGCGAATCATCT----AAAATCCACCGTTATTTCTATCGGGC 196
BSNT_01613___ 197 AGACGCTTACTATTCCAGGCAGCAAATC---------CAGCA------CT 231
||||.||.|..|||||...|.||||||| ||||| |.
RBAM_009630__ 197 AGACACTCAACATTCCTAACGGCAAATCAGATTCCGGCAGCAAAAAGCCA 246
BSNT_01613___ 232 TCTTCATCTACTTCAAGCTCAACAACCAAGAAGAGCGGAAGTTCT----- 276
|||||| |||||.|||||.|...||
RBAM_009630__ 247 TCTTCA---------------------AAGAACAGCGGCACGACTAAAAG 275
BSNT_01613___ 277 -GTTTACACAGTGAAAAGCGGAGATTCACTTTGGCTGATCGCAAATGAGT 325
|||||.||||||||||||||.||.||.||.||||||||||||..|||.|
RBAM_009630__ 276 CGTTTATACAGTGAAAAGCGGCGACTCGCTGTGGCTGATCGCATCTGATT 325
BSNT_01613___ 326 TTAAAATGACGGTGCAGGAACTGAAAAAATTAAACGGACTAAGCAGCGAT 375
||||||||.|.||.|||||||||||||||||.|||||.||.|..|||||.
RBAM_009630__ 326 TTAAAATGTCCGTACAGGAACTGAAAAAATTGAACGGTCTGACAAGCGAC 375
BSNT_01613___ 376 TTAATTCGTGCTGGGCAGAAATTAAAGGTGTCCGGTACTGTTTCTTCAAG 425
|||||.||.||.||.|||||..|..|.|||.|.||.|..|||||.|||||
RBAM_009630__ 376 TTAATCCGCGCCGGACAGAAGCTGCAAGTGACGGGGAAAGTTTCCTCAAG 425
BSNT_01613___ 426 TTC----CAGTACAAAAA---------GCAGTTCCAATAAGAGTTCAAGC 462
..| ||| |.||||| ||||
RBAM_009630__ 426 CACCGATCAG-AAAAAAACCACGCCGGGCAG------------------- 455
BSNT_01613___ 463 TCCAGTTCAAAAAGCAGTTCTAATAAGAGTTCAAGTTCCTCATCTTCTAC 512
|||.|||||.|||||....|||.|| ||.|||||||| |
RBAM_009630__ 456 --CAGCTCAAACAGCAGCAAAAATCAG---------TCATCATCTTC--C 492
BSNT_01613___ 513 GGGAACATATAAGGTGCAGCTTGGAGATTCACTCTGGAAAATTGCAAACA 562
||| ||.|||||.||..|.||.||.||||||||.|||||.||.|||||||
RBAM_009630__ 493 GGG-ACGTATAAAGTCAAACTCGGCGATTCACTATGGAAGATCGCAAACA 541
BSNT_01613___ 563 AAGTCAATATGTCCATCGCTGAATTGAAGGTCTTGAACAACTTAAAATCA 612
..|||||||||.||||.||.|||.|.||.||.||.||||||||||||.|.
RBAM_009630__ 542 GCGTCAATATGACCATTGCGGAACTTAAAGTATTAAACAACTTAAAAACG 591
BSNT_01613___ 613 GACACCATTTACGTGAATCAGGTGTTGAAAACAAAATCAAGCGGC-TCT- 660
||.||.||.|||||.||.||.||..|||||||||||..|| ||.| |||
RBAM_009630__ 592 GATACGATCTACGTAAACCAAGTCCTGAAAACAAAAGGAA-CGTCTTCTT 640
BSNT_01613___ 661 -----GATACGTCTTCTAAAGACACTTCATCCAAATCGAACCAAACTTCA 705
.|.|||.|.||.|||||||.|||| |||||||.|
RBAM_009630__ 641 CGGGAAACACGCCGTCAAAAGACAATTCA---------AACCAAAAT--- 678
BSNT_01613___ 706 GCAACAACTAAA--------------TATACCGTTAAAAGCGGTGATTCA 741
||.|||.|.| |||||.||.||||||||.||.|||
RBAM_009630__ 679 --AAAAACCAGACGCAAACGTCCTCTTATACAGTAAAAAGCGGAGACTCA 726
BSNT_01613___ 742 CTTTGGAAAATCGCAAACAACTATAACCTGTCTGTACAGCAAATCCGAAA 791
||.|||||||||||||||...||.||..||.|.||.|||||||||.|||.
RBAM_009630__ 727 CTCTGGAAAATCGCAAACGCATACAATATGACGGTTCAGCAAATCAGAAG 776
BSNT_01613___ 792 TATCAACAATCTGAAATCAGATGTGCTGTACGTTGGACAAGTATTGAAGC 841
.||||||||.||||..|||||..|||||...||.||||||||..|.||||
RBAM_009630__ 777 CATCAACAAACTGACGTCAGACATGCTGCGGGTCGGACAAGTGCTTAAGC 826
BSNT_01613___ 842 TGAC----AGGTAAAGCATCTTCAGGCTCTTCATCATCGTCGTCTTCTTC 887
|||| |.|| |||||||.|||||| ||||||||..|
RBAM_009630__ 827 TGACCAAAACGT----CATCTTCCGGCTCT---------TCGTCTTCACC 863
BSNT_01613___ 888 GTCAAATGCAAGC------------TCAGGCACGACGACTACATACACAG 925
|||||.|.|.|.| .||||.|..||.||||||||.||.|
RBAM_009630__ 864 GTCAACTCCGAACCAGTCCGGAGATACAGGGAAAACCACTACATATACCG 913
BSNT_01613___ 926 TGAAAAGCGGTGATTCCTTATGGGTGATTGCTCAAAAATTTAATGTAACA 975
||||||||||.|||||.|||||||||||.||.|||||.||.|||||.||.
RBAM_009630__ 914 TGAAAAGCGGGGATTCTTTATGGGTGATCGCCCAAAAGTTCAATGTGACC 963
BSNT_01613___ 976 GCTCAGCAGATTCGTGAGAAAAACAATTTAAAAACGGATG-TCTTGCAGG 1024
||.||||||||.||.||||||||||||.|.|||||.|||| |||| ||..
RBAM_009630__ 964 GCCCAGCAGATCCGCGAGAAAAACAATCTGAAAACAGATGTTCTT-CAAA 1012
BSNT_01613___ 1025 TTGGCCAAAAGCTGGTCATTTCCGG---------AAAAGCTTCATC--AT 1063
|.||.|||||||||...|||.|||| |||..|..||.| |
RBAM_009630__ 1013 TCGGACAAAAGCTGACGATTACCGGGCAGCAGACAAACACGACACCGAA- 1061
BSNT_01613___ 1064 CGTCTTCA-TCCGGTTCTTCAAACAC------CACCAGCTCAACGAGTGC 1106
||| ||||| .||||| |||..|.|||||.||.||
RBAM_009630__ 1062 -----TCAGTCCGG------CAACACAGGCGGCACAGGTTCAACAAGCGC 1100
BSNT_01613___ 1107 GAAGATTAACACAATGATTTCG--GCCGCTAAAGCGCAGCTTGGGGTTCC 1154
.||||||||...||||| ||| |||||.|||||.|||||.||.||.||
RBAM_009630__ 1101 AAAGATTAATGTAATGA--TCGATGCCGCAAAAGCTCAGCTGGGCGTACC 1148
BSNT_01613___ 1155 GTATCGCTGGGGAGGCACGACACCGTCCGGGTTTGACTGCAGCGGATTCA 1204
||||...|||||.||.|||||.|||...||.||||||||||||||.||||
RBAM_009630__ 1149 GTATGTATGGGGCGGGACGACGCCGAGAGGCTTTGACTGCAGCGGTTTCA 1198
BSNT_01613___ 1205 TTTACTATGTACTGAACAAAGTCACATCCGTATCTAGATTAACGGCAGCG 1254
||||.||.||.||.||.||.|||||.||.|||||.|||.|..|.||.||.
RBAM_009630__ 1199 TTTATTACGTTCTCAATAAGGTCACTTCTGTATCCAGACTTTCAGCCGCA 1248
BSNT_01613___ 1255 GGATATTGGAACACAATGAAATCAGTTAGCCAGCCTGCTGTCGGAGATTT 1304
||.||.|||||.||.||||.||||||.||||||||.||.|||||.||.||
RBAM_009630__ 1249 GGCTACTGGAATACGATGACATCAGTCAGCCAGCCGGCGGTCGGTGACTT 1298
BSNT_01613___ 1305 CGTTTTCTTTACAACATATAAAGCCGGCCCTTCCCACGTCGGAATTTACC 1354
.||.||.||..||||.|||||||||||.||||||||||||||.|||||.|
RBAM_009630__ 1299 TGTCTTTTTCTCAACTTATAAAGCCGGACCTTCCCACGTCGGTATTTATC 1348
BSNT_01613___ 1355 TAGGCAACGGGGAATTCATAAATGCCAACGATTCCGGAGTTGTCATTTCC 1404
|.||.|||||..|.||.||.||||||||||||||.||.||.||.||||||
RBAM_009630__ 1349 TCGGGAACGGCCAGTTTATTAATGCCAACGATTCGGGTGTCGTTATTTCC 1398
BSNT_01613___ 1405 AATATGAACAACTCTTACTGGAAACAGCGCTATCTCGGTGCAAAACGATA 1454
|..||||||||.||.||.||||||||||||||.|||||.||||||||.|.
RBAM_009630__ 1399 AGCATGAACAATTCCTATTGGAAACAGCGCTACCTCGGCGCAAAACGTTT 1448
BSNT_01613___ 1455 TTTCTAA 1461
.||||.|
RBAM_009630__ 1449 CTTCTGA 1455
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.