Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01601 and RBAM_009560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01601___glpD.1.9828.seq
# -bsequence dna-align/RBAM_009560___glpD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01601___glpD-RBAM_009560___glpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01601___glpD-RBAM_009560___glpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01601___glpD
# 2: RBAM_009560___glpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1674
# Identity: 1306/1674 (78.0%)
# Similarity: 1306/1674 (78.0%)
# Gaps: 12/1674 ( 0.7%)
# Score: 5081.0
#
#
#=======================================
BSNT_01601___ 1 ATGATGAAACATCAATTTTCAAGTCTTGAAAGAGATCGCATGCTGACAGA 50
||||||||.||.||||||||||||.|.|||.|.||||..||||||..|||
RBAM_009560__ 1 ATGATGAATCACCAATTTTCAAGTTTGGAACGGGATCATATGCTGGAAGA 50
BSNT_01601___ 51 CATGACGAAAAAAACATATGACCTATTTATTATCGGAGGAGGAATTACAG 100
||||||.|||||||||||.||.||.||||||||.||.|||||.|||||.|
RBAM_009560__ 51 CATGACTAAAAAAACATACGATCTGTTTATTATAGGGGGAGGTATTACGG 100
BSNT_01601___ 101 GAGCCGGAACAGCTCTTGACGCGGCATCAAGGGGAATGAAGGTCGCACTA 150
|.|||||.||.||.||||||||.||.||||||||||||||.|||||..|.
RBAM_009560__ 101 GTGCCGGCACGGCGCTTGACGCTGCTTCAAGGGGAATGAAAGTCGCTTTG 150
BSNT_01601___ 151 AGCGAAATGCAGGACTTTGCGGCGGGAACATCAAGCCGATCAACGAAGCT 200
||||||||||||||.||.|||||.||.|||||||||.||||.||.|||||
RBAM_009560__ 151 AGCGAAATGCAGGATTTCGCGGCCGGCACATCAAGCAGATCCACAAAGCT 200
BSNT_01601___ 201 GGTACATGGCGGCTTGCGCTATTTAAAACAATTTGAAGTGAAAATGGTCG 250
.||.||.|||||.|||||.|||.|.||.|||||||||||.||||||||.|
RBAM_009560__ 201 TGTCCACGGCGGTTTGCGTTATCTGAAGCAATTTGAAGTCAAAATGGTTG 250
BSNT_01601___ 251 CTGAGGTAGGAAAAGAGCGGGCGATTGTGTATGAAAACGGCCCGCATGTC 300
|.||.||.||.||.||.||.||.||.|||||.||||||||||||||.|||
RBAM_009560__ 251 CAGAAGTCGGTAAGGAACGTGCCATCGTGTACGAAAACGGCCCGCACGTC 300
BSNT_01601___ 301 ACTACACCGGAATGGATGCTGCTTCCATTTCATAAAGGCGGCACATTTGG 350
||.||.|||||||||||||||||.||.|||||||||||||||||.||.||
RBAM_009560__ 301 ACGACGCCGGAATGGATGCTGCTGCCGTTTCATAAAGGCGGCACGTTCGG 350
BSNT_01601___ 351 TTCATTTACAACATCTATCGGGTTAAGGGTTTATGACTTCCTTGCAGGTG 400
||||||..|.||.||.|||||..|..|.||.|||||||...|.||.||.|
RBAM_009560__ 351 TTCATTCTCTACTTCCATCGGCCTGCGTGTGTATGACTATTTAGCGGGAG 400
BSNT_01601___ 401 TGAAAAAGTCAGAACGAAGAAGCATGCTTTCAGCAAAAGAAACGCTGCAA 450
|.|||||.|||||.||.|||||||||||.||.||.|||||||||||||||
RBAM_009560__ 401 TAAAAAAATCAGAGCGCAGAAGCATGCTGTCTGCTAAAGAAACGCTGCAA 450
BSNT_01601___ 451 AAAGAGCCTTTGGTAAAAAAAGACGGCTTAGAAGGCGGCGGGTACTATGT 500
||||||||..|.||.|||||||||||||||.|||||||.||.||.|||||
RBAM_009560__ 451 AAAGAGCCGCTCGTCAAAAAAGACGGCTTAAAAGGCGGAGGCTATTATGT 500
BSNT_01601___ 501 GGAATACCGCACTGACGATGCGAGACTGACCATCGAAGTCATGAAGGAAG 550
.||||||||.||.|||||||||||||||||.||.|||||||||||.||||
RBAM_009560__ 501 AGAATACCGGACGGACGATGCGAGACTGACGATTGAAGTCATGAAAGAAG 550
BSNT_01601___ 551 CGGTGAAATTCGGGGCAGAGCCTGTGAATTACTCCAAAGTGAAGGAGCTT 600
|.||.||||||||.||.||||||||.||.||.||.||||||||.||.||.
RBAM_009560__ 551 CCGTTAAATTCGGTGCGGAGCCTGTCAACTATTCTAAAGTGAAAGAACTG 600
BSNT_01601___ 601 CTTTACGAAAAAGGCAAAGCCGTCGGCGTATTAATTGAAGATGTGCTGAC 650
|||||.||||||||.||||..||||||||.||||||||||||.|||||.|
RBAM_009560__ 601 CTTTATGAAAAAGGAAAAGTTGTCGGCGTTTTAATTGAAGATCTGCTGTC 650
BSNT_01601___ 651 AAAGAAAGAATATAAAGTGTATGCGAAAAAAATTGTCAATGCTACAGGCC 700
|...||.|||||.|||||.||.||.||||||||.||||||||.|||||.|
RBAM_009560__ 651 AGGCAAGGAATACAAAGTTTACGCCAAAAAAATCGTCAATGCGACAGGTC 700
BSNT_01601___ 701 CTTGGGTCGATCAGCTCAGAGAAAAAGACCATTCGAAAAACGGAAAGCAT 750
|.||||||||..||||.||||||||||||||....||||.||||||.|||
RBAM_009560__ 701 CGTGGGTCGACGAGCTGAGAGAAAAAGACCACAGCAAAAGCGGAAAACAT 750
BSNT_01601___ 751 TTGCAGCATACAAAAGGCATTCACCTTGTATTTGACCAGTCTGTCTTTCC 800
.|.|||||.||||||||..|.||.||.|||||.|||||.||.||.||.||
RBAM_009560__ 751 CTTCAGCACACAAAAGGGGTCCATCTCGTATTCGACCAATCCGTATTCCC 800
BSNT_01601___ 801 GCTGAAACAGGCTGTATATTTCGATACACCTGATGGCCGGATGGTATTTG 850
|||.||||||||.||.||.||.|||||.||.||.|||||||||||.||.|
RBAM_009560__ 801 GCTTAAACAGGCGGTGTACTTTGATACGCCGGACGGCCGGATGGTGTTCG 850
BSNT_01601___ 851 CGATTCCTCGTGAAGGCAAAACATACGTGGGAACAACAGACACTGTTTAC 900
|.|||||.||||||||.||||||||||||||.||.||.||.||.||||||
RBAM_009560__ 851 CCATTCCGCGTGAAGGAAAAACATACGTGGGTACGACCGATACGGTTTAC 900
BSNT_01601___ 901 AAAGAGGCGCTGGAGCATCCGCGGATGACAACGGAGGATCGTGATTATGT 950
|||.|....||.|||||.|||||.|||||...|.|||||||.||||||||
RBAM_009560__ 901 AAACAAAAACTTGAGCACCCGCGCATGACGGTGCAGGATCGCGATTATGT 950
BSNT_01601___ 951 CATCAATTCAATCAATTATATGTTCCCGGAACTGAATATCACTGCGAATG 1000
|.|||..||.||||||||||||||||||||||||||.||.||.|||.|.|
RBAM_009560__ 951 CGTCAGCTCCATCAATTATATGTTCCCGGAACTGAACATTACGGCGGACG 1000
BSNT_01601___ 1001 ACATCGAATCCAGCTGGGCAGGGCTGCGTCCGCTGATTCATGAAGAAGGC 1050
|.||.|||||.||||||||.||.||..|.|||||.|||||.||||||||.
RBAM_009560__ 1001 ATATTGAATCAAGCTGGGCCGGCCTCAGACCGCTTATTCACGAAGAAGGG 1050
BSNT_01601___ 1051 AAAGATCCTTCTGAAATTTCACGGAAAGACGAGATTTGGACATCTGACTC 1100
|||||.||.|||||.||.||.||.|||||.||.||.|||||||||.|.||
RBAM_009560__ 1051 AAAGACCCGTCTGAGATCTCCCGTAAAGATGAAATCTGGACATCTCAATC 1100
BSNT_01601___ 1101 AGGCTTGATCACCATTGCCGGCGGAAAACTGACTGGATACAGAAAAATGG 1150
||||.||||.||.||.|||||.|||||||||||.||.|||.|.|||||||
RBAM_009560__ 1101 AGGCCTGATTACGATCGCCGGAGGAAAACTGACGGGCTACCGTAAAATGG 1150
BSNT_01601___ 1151 CGGAGCACATCGTTGATCTTGTACGTGACCGCTTAAAAGAAGAAGGCGCA 1200
|.||||||||.||.||||||||.||.||||||||.||||||||.||||..
RBAM_009560__ 1151 CTGAGCACATTGTCGATCTTGTCCGCGACCGCTTGAAAGAAGAGGGCGGC 1200
BSNT_01601___ 1201 AAGGATTTTGGCCCGTGTAAAACGAAAAACATGCCAATCTCAGGCGGGCA 1250
.||||.||.|||...||.||.|||||.|..|||||.||.||.|||||.||
RBAM_009560__ 1201 CAGGACTTCGGCGGCTGCAAGACGAAGACGATGCCGATTTCCGGCGGACA 1250
BSNT_01601___ 1251 CGTCGGAGGTTCGAAAAATCTCATGTCCTTCGTTACCGCGAAAACAAAAG 1300
.|||||.||.||.|||||..||..|||.||.||....||.||.|||||||
RBAM_009560__ 1251 TGTCGGCGGCTCTAAAAACTTCGAGTCATTTGTGGAAGCAAAGACAAAAG 1300
BSNT_01601___ 1301 AAGG------AATTGCAGCCGGTTTATCAGAAAAAGACGCAAAACAGCTG 1344
|.|| ||| ||||||||||.|..||..|||.||.|||.|.
RBAM_009560__ 1301 ACGGCTTGAAAAT------CGGTTTATCACAGGAAACCGCTAAGCAGTTA 1344
BSNT_01601___ 1345 GCGATCAGATACGGCTCTAACGTAGATCGCGTCTTTGACCGGATAGAAGC 1394
||.||||||||||||||||||||.||....||.||...||||||.||||.
RBAM_009560__ 1345 GCCATCAGATACGGCTCTAACGTTGAAAATGTATTCAGCCGGATTGAAGG 1394
BSNT_01601___ 1395 GCTGAAAGATGAGGCCGCGAAACGCAACATTCCGGTTCATATTCTTGCTG 1444
.||||||||.||.||.|..||||||.|.|||||||||||.|||.|.||.|
RBAM_009560__ 1395 TCTGAAAGACGAAGCGGAAAAACGCCAGATTCCGGTTCACATTTTGGCGG 1444
BSNT_01601___ 1445 AGGCAGAATACAGTATAGAAGAAGAGATGACTGCAACCCCTGCTGACTTC 1494
|.||.|..|||||.||.||||||||.|||.||||.||.|||||.||.|||
RBAM_009560__ 1445 AAGCGGCTTACAGCATCGAAGAAGAAATGGCTGCGACACCTGCCGATTTC 1494
BSNT_01601___ 1495 TTTGTCCGCAGAACGGGACGTTTATTTTTTGATATCAATTGGGTAAGAAC 1544
||.|||||||||||||||.|..|.||.||.||.|||||.|||||...|||
RBAM_009560__ 1495 TTCGTCCGCAGAACGGGAAGACTGTTCTTCGACATCAAATGGGTGCAAAC 1544
BSNT_01601___ 1545 ATATAAAGATGCCGTTATTGATTTTATGAACGAGCGATTCCAATGGGATG 1594
.||||||...|||||.|||||||..||||.|||.||||||||||||.|||
RBAM_009560__ 1545 GTATAAAACAGCCGTGATTGATTACATGAGCGACCGATTCCAATGGAATG 1594
BSNT_01601___ 1595 AGCAGGCAAAAAACAAACATACAGAAAACCTCAACAAGCTTTTACACGAT 1644
|..|..|.|||.|.|||||.||.||.....|.||.|.|||..|.|||||.
RBAM_009560__ 1595 ACGAAACGAAAGAAAAACACACTGAGTGGTTAAATACGCTGCTGCACGAC 1644
BSNT_01601___ 1645 GCGGTCGTACCGCTTGAGCAATAA 1668
|||||.||.|||||.||.||||||
RBAM_009560__ 1645 GCGGTTGTTCCGCTCGAACAATAA 1668
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.