Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01593 and RBAM_009510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:15
# Commandline: needle
# -asequence dna-align/BSNT_01593___yhcX.1.9828.seq
# -bsequence dna-align/RBAM_009510___yhcX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01593___yhcX-RBAM_009510___yhcX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01593___yhcX-RBAM_009510___yhcX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01593___yhcX
# 2: RBAM_009510___yhcX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1548
# Identity: 1270/1548 (82.0%)
# Similarity: 1270/1548 (82.0%)
# Gaps: 15/1548 ( 1.0%)
# Score: 5254.0
#
#
#=======================================
BSNT_01593___ 1 TTGTCTGAGAAATTAGATTTGACCCGGTTTGAAAAGAAAATGGTTATCCG 50
||||||||||||.|.|||.|||||||.|||||||||||||||||.|||||
RBAM_009510__ 1 TTGTCTGAGAAACTTGATCTGACCCGTTTTGAAAAGAAAATGGTCATCCG 50
BSNT_01593___ 51 CAATATCGAAGAGAAAGACATCGACAAGATTATCGATCTTCAAAAGGACT 100
.|||||.|||||||||||.|||.||||.|||||.||.||.||||||||.|
RBAM_009510__ 51 GAATATGGAAGAGAAAGATATCAACAAAATTATTGAGCTGCAAAAGGATT 100
BSNT_01593___ 101 GCTTTCCGGGGATGGAACCTTGGAAGCGAGAGCATTTAATCAGCCATTTG 150
|.||||||||||||||.||.|||.|||..||||||||||||||||||.|.
RBAM_009510__ 101 GTTTTCCGGGGATGGAGCCGTGGGAGCCTGAGCATTTAATCAGCCATCTC 150
BSNT_01593___ 151 GAGCATTTTCCAGACGGGCAGTTTTGTGCAGAATTCGAAGGTGAAATTAT 200
|.|||.||||||||.||.||||||||.||.||.|..|||||.||||||||
RBAM_009510__ 151 GCGCACTTTCCAGAAGGTCAGTTTTGCGCCGAGTATGAAGGGGAAATTAT 200
BSNT_01593___ 201 CGGTTCGTGCTCAAGTCTCCTGATTAACTTTGATGAATATGATGACCGCC 250
||||||.||||||||.||..|.||.||.||.|||||||||||||||||||
RBAM_009510__ 201 CGGTTCATGCTCAAGCCTGATCATCAATTTCGATGAATATGATGACCGCC 250
BSNT_01593___ 251 ATACGTGGCAGGACATTACAGATGACGGTTATATCACCAACCATAATCCT 300
|.||||||||||||||||||||.||||||||||||||.|||||.||.||.
RBAM_009510__ 251 ACACGTGGCAGGACATTACAGACGACGGTTATATCACGAACCACAACCCG 300
BSNT_01593___ 301 GACGGCTTGAATATGTACGGAATTGAAGTCATGGTGCACCCGAAATACAG 350
|||||.||||||.|||||||.|||||.||.|||||.||||||.|||||||
RBAM_009510__ 301 GACGGATTGAATCTGTACGGGATTGAGGTAATGGTTCACCCGGAATACAG 350
BSNT_01593___ 351 ACGAATGAAGATCGGCCACCGTTTGTACGAGGCGAGAAAGGACTTAGCCA 400
|||.|||||.|||||.|||||..||||.|||||||||||.||||||||.|
RBAM_009510__ 351 ACGGATGAAAATCGGACACCGGCTGTATGAGGCGAGAAAAGACTTAGCGA 400
BSNT_01593___ 401 GACGCTTAAACCTGAAAAGCATCATCATAGGCGGACGGATTCCAAACTAT 450
||||.||.||.||||||||||||||.||.|||||.||||||||.||.|||
RBAM_009510__ 401 GACGATTGAATCTGAAAAGCATCATTATCGGCGGGCGGATTCCGAATTAT 450
BSNT_01593___ 451 CACAAATATGCAGATGAAATGACAGCGAGAGAGTATGTTGAACAGGTGAC 500
||.||.|||||.||.||||||||.|||||||..|||||.|||||||||||
RBAM_009510__ 451 CATAAGTATGCGGAAGAAATGACGGCGAGAGCCTATGTCGAACAGGTGAC 500
BSNT_01593___ 501 ACGCCACCAAATATACGATCCGGTTCTTTCTTTTCAGCTGATGAACGGCT 550
.|||||.||.||.||.||||||||.||||||||.||||||||||||||.|
RBAM_009510__ 501 GCGCCATCAGATTTATGATCCGGTGCTTTCTTTCCAGCTGATGAACGGAT 550
BSNT_01593___ 551 TTACCCTTATGCGAATTAACCCGAATTATCTCCCAGATGATACAGCTTCG 600
||||.||.|||||.||.||.||||||||||||||.|||||.||.||.||.
RBAM_009510__ 551 TTACGCTCATGCGGATCAATCCGAATTATCTCCCGGATGACACCGCGTCC 600
BSNT_01593___ 601 ATCAAGTATGCGACGCTGATGGAATGGAATAATGTCGATTATCTACCGCA 650
||.||.||||||||..|.|||||||||||.|||||||||||.|| ||.
RBAM_009510__ 601 ATAAAATATGCGACATTAATGGAATGGAACAATGTCGATTACCT---GCC 647
BSNT_01593___ 651 GCAGACAAAACGCTATTATAAATCGGCGTTCCCTGTTAGAATTTGTGTGA 700
||||.|.||.||||||||.||||||||.||.||.||..|.||.||.||.|
RBAM_009510__ 648 GCAGTCGAAGCGCTATTACAAATCGGCATTTCCGGTGCGCATCTGCGTCA 697
BSNT_01593___ 701 TCCAATACGAAATGAAGAAAATTTATTCCTTTGAGGAATTTGCGAATCAA 750
|.|||||.||||||||.||.|||||.|||||.|||||||||||.|||||.
RBAM_009510__ 698 TTCAATATGAAATGAAAAAGATTTACTCCTTCGAGGAATTTGCCAATCAG 747
BSNT_01593___ 751 GTAGAATACTATGTCGATGTTGCTTCCGACGCAAGATCTGATTTTGCGGT 800
||.|||||.|||||||||||.||||||||.||.|||||||||||.|||||
RBAM_009510__ 748 GTTGAATATTATGTCGATGTGGCTTCCGATGCGAGATCTGATTTCGCGGT 797
BSNT_01593___ 801 GTTCCCGGAAATTTTCACAACCCAGCTGATGTCTTTCCTTGAGGAACGGT 850
||||||||||||||||||.||.|||||.|||||||||||.|||||.||.|
RBAM_009510__ 798 GTTCCCGGAAATTTTCACGACGCAGCTCATGTCTTTCCTCGAGGAGCGTT 847
BSNT_01593___ 851 CACCGAGCTTGGCGGTGCAGAGAATTACCGAGTATACAGAAGATTACATC 900
|.|||||..||||..|.|||||.||||||||.|||||.||.||.||.|||
RBAM_009510__ 848 CTCCGAGTCTGGCCATTCAGAGGATTACCGAATATACCGAGGACTATATC 897
BSNT_01593___ 901 AGCCTGTTTACTGACTTGGCTGTGAAGTATAACGTCAACATTATCGGCGG 950
|||||.|||||.||..|.||.|||||.||||||||||||||.||||||||
RBAM_009510__ 898 AGCCTCTTTACAGATCTCGCGGTGAAATATAACGTCAACATCATCGGCGG 947
BSNT_01593___ 951 ATCTCATTTCGTCGAAGAGGAAGGCAAGATCTATAATATCGCTTACCTGT 1000
.||.||.|||||.|||||.||.||.||.||.|||||.|||||.|||.|.|
RBAM_009510__ 948 CTCCCACTTCGTTGAAGAAGAGGGGAAAATTTATAACATCGCCTACTTAT 997
BSNT_01593___ 1001 TCAGACGGGACGGAACAATCGAAAAGCAATACAAACTCCATATTACGCCG 1050
|||||||.|||||.||.||.|||||.|||||.||.||.||.|||||||||
RBAM_009510__ 998 TCAGACGTGACGGCACGATTGAAAAACAATATAAGCTTCACATTACGCCG 1047
BSNT_01593___ 1051 AATGAACGCAAATGGTGGGGGATCAGCGCAGGAGACCAAGTTCGCGTGTT 1100
|||||.||.|||||||||||.||||||||.||||||...||.|||||.||
RBAM_009510__ 1048 AATGAGCGGAAATGGTGGGGCATCAGCGCCGGAGACAGGGTGCGCGTATT 1097
BSNT_01593___ 1101 TGATACGGACTGCGGGAAAATCGCGATCCAGATCTGTTATGACATTGAAT 1150
|||||||||||||||.||.|||||.||.|||||||||||.||.||.||||
RBAM_009510__ 1098 TGATACGGACTGCGGAAAGATCGCCATTCAGATCTGTTACGATATCGAAT 1147
BSNT_01593___ 1151 TTCCTGAGCTTGCCCGGATTGCGGCTGATAAAGGAGCCAAAATCATCTTT 1200
||||.||||||||..|.|||||.||.|||.||||.||.|||||.||||||
RBAM_009510__ 1148 TTCCGGAGCTTGCGAGAATTGCCGCGGATCAAGGGGCGAAAATGATCTTT 1197
BSNT_01593___ 1201 ACGCCATTTTGTACAGAAGACCGTCAAGGCTATCTGCGTGTCAGATACTG 1250
|||||.||.||.||.||||||||.||||||||..||||.||.||.|||||
RBAM_009510__ 1198 ACGCCGTTCTGCACTGAAGACCGCCAAGGCTACTTGCGCGTAAGGTACTG 1247
BSNT_01593___ 1251 TTCGCAGGCTAGAGCGGTTGAAAATCAAATTTATACGGTTATCTCTGGAA 1300
.||.|||||..|||||||||||||.||||||||.||.||.|||||.||.|
RBAM_009510__ 1248 CTCTCAGGCGCGAGCGGTTGAAAACCAAATTTACACCGTCATCTCGGGTA 1297
BSNT_01593___ 1301 CGGTCGGAAACCTTCCGCAAACGGAAAACATGGATATCCAATACGCCCAG 1350
|||||||||||||.||||||||.|||||.||||||||.||||||||.|||
RBAM_009510__ 1298 CGGTCGGAAACCTGCCGCAAACAGAAAATATGGATATTCAATACGCGCAG 1347
BSNT_01593___ 1351 TCAGGCATCTTTGCCCCGTCTGATTTTGAATTCGCCCGAGACGGCATTGT 1400
||||.|||.|||||.|||||||||||||||||.|||.|||||||.||.||
RBAM_009510__ 1348 TCAGCCATTTTTGCTCCGTCTGATTTTGAATTTGCCAGAGACGGAATCGT 1397
BSNT_01593___ 1401 CGGCGAAACAAACCCGAATATTGAAATGGTTGTCATCGGCGATGTTGACC 1450
|||.|||||.||.||||||||.||||||||.||.|||||.||.||.||||
RBAM_009510__ 1398 CGGTGAAACGAATCCGAATATCGAAATGGTCGTGATCGGGGACGTGGACC 1447
BSNT_01593___ 1451 TGGAAATTCTCAGAAGACAGCGCCAAAACGGTACAGTGCGCCAGCTAAAA 1500
|.|||||..|.|||||.|||||..|||||||.||.|||||||||||.|||
RBAM_009510__ 1448 TTGAAATCTTAAGAAGGCAGCGTGAAAACGGAACCGTGCGCCAGCTGAAA 1497
BSNT_01593___ 1501 GACAGACGGCG---TGATATTTATCATATT---CAATATAAAAAATAA 1542
||| ||||| .||||||||.|..||| ||...||||.||
RBAM_009510__ 1498 GAC---CGGCGCAAAGATATTTACCGGATTACGCATCTTAAATAA--- 1539
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