Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01593 and RBAM_009510

See Amino acid alignment / Visit BSNT_01593 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:15
# Commandline: needle
#    -asequence dna-align/BSNT_01593___yhcX.1.9828.seq
#    -bsequence dna-align/RBAM_009510___yhcX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01593___yhcX-RBAM_009510___yhcX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01593___yhcX-RBAM_009510___yhcX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01593___yhcX
# 2: RBAM_009510___yhcX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1548
# Identity:    1270/1548 (82.0%)
# Similarity:  1270/1548 (82.0%)
# Gaps:          15/1548 ( 1.0%)
# Score: 5254.0
# 
#
#=======================================

BSNT_01593___      1 TTGTCTGAGAAATTAGATTTGACCCGGTTTGAAAAGAAAATGGTTATCCG     50
                     ||||||||||||.|.|||.|||||||.|||||||||||||||||.|||||
RBAM_009510__      1 TTGTCTGAGAAACTTGATCTGACCCGTTTTGAAAAGAAAATGGTCATCCG     50

BSNT_01593___     51 CAATATCGAAGAGAAAGACATCGACAAGATTATCGATCTTCAAAAGGACT    100
                     .|||||.|||||||||||.|||.||||.|||||.||.||.||||||||.|
RBAM_009510__     51 GAATATGGAAGAGAAAGATATCAACAAAATTATTGAGCTGCAAAAGGATT    100

BSNT_01593___    101 GCTTTCCGGGGATGGAACCTTGGAAGCGAGAGCATTTAATCAGCCATTTG    150
                     |.||||||||||||||.||.|||.|||..||||||||||||||||||.|.
RBAM_009510__    101 GTTTTCCGGGGATGGAGCCGTGGGAGCCTGAGCATTTAATCAGCCATCTC    150

BSNT_01593___    151 GAGCATTTTCCAGACGGGCAGTTTTGTGCAGAATTCGAAGGTGAAATTAT    200
                     |.|||.||||||||.||.||||||||.||.||.|..|||||.||||||||
RBAM_009510__    151 GCGCACTTTCCAGAAGGTCAGTTTTGCGCCGAGTATGAAGGGGAAATTAT    200

BSNT_01593___    201 CGGTTCGTGCTCAAGTCTCCTGATTAACTTTGATGAATATGATGACCGCC    250
                     ||||||.||||||||.||..|.||.||.||.|||||||||||||||||||
RBAM_009510__    201 CGGTTCATGCTCAAGCCTGATCATCAATTTCGATGAATATGATGACCGCC    250

BSNT_01593___    251 ATACGTGGCAGGACATTACAGATGACGGTTATATCACCAACCATAATCCT    300
                     |.||||||||||||||||||||.||||||||||||||.|||||.||.||.
RBAM_009510__    251 ACACGTGGCAGGACATTACAGACGACGGTTATATCACGAACCACAACCCG    300

BSNT_01593___    301 GACGGCTTGAATATGTACGGAATTGAAGTCATGGTGCACCCGAAATACAG    350
                     |||||.||||||.|||||||.|||||.||.|||||.||||||.|||||||
RBAM_009510__    301 GACGGATTGAATCTGTACGGGATTGAGGTAATGGTTCACCCGGAATACAG    350

BSNT_01593___    351 ACGAATGAAGATCGGCCACCGTTTGTACGAGGCGAGAAAGGACTTAGCCA    400
                     |||.|||||.|||||.|||||..||||.|||||||||||.||||||||.|
RBAM_009510__    351 ACGGATGAAAATCGGACACCGGCTGTATGAGGCGAGAAAAGACTTAGCGA    400

BSNT_01593___    401 GACGCTTAAACCTGAAAAGCATCATCATAGGCGGACGGATTCCAAACTAT    450
                     ||||.||.||.||||||||||||||.||.|||||.||||||||.||.|||
RBAM_009510__    401 GACGATTGAATCTGAAAAGCATCATTATCGGCGGGCGGATTCCGAATTAT    450

BSNT_01593___    451 CACAAATATGCAGATGAAATGACAGCGAGAGAGTATGTTGAACAGGTGAC    500
                     ||.||.|||||.||.||||||||.|||||||..|||||.|||||||||||
RBAM_009510__    451 CATAAGTATGCGGAAGAAATGACGGCGAGAGCCTATGTCGAACAGGTGAC    500

BSNT_01593___    501 ACGCCACCAAATATACGATCCGGTTCTTTCTTTTCAGCTGATGAACGGCT    550
                     .|||||.||.||.||.||||||||.||||||||.||||||||||||||.|
RBAM_009510__    501 GCGCCATCAGATTTATGATCCGGTGCTTTCTTTCCAGCTGATGAACGGAT    550

BSNT_01593___    551 TTACCCTTATGCGAATTAACCCGAATTATCTCCCAGATGATACAGCTTCG    600
                     ||||.||.|||||.||.||.||||||||||||||.|||||.||.||.||.
RBAM_009510__    551 TTACGCTCATGCGGATCAATCCGAATTATCTCCCGGATGACACCGCGTCC    600

BSNT_01593___    601 ATCAAGTATGCGACGCTGATGGAATGGAATAATGTCGATTATCTACCGCA    650
                     ||.||.||||||||..|.|||||||||||.|||||||||||.||   ||.
RBAM_009510__    601 ATAAAATATGCGACATTAATGGAATGGAACAATGTCGATTACCT---GCC    647

BSNT_01593___    651 GCAGACAAAACGCTATTATAAATCGGCGTTCCCTGTTAGAATTTGTGTGA    700
                     ||||.|.||.||||||||.||||||||.||.||.||..|.||.||.||.|
RBAM_009510__    648 GCAGTCGAAGCGCTATTACAAATCGGCATTTCCGGTGCGCATCTGCGTCA    697

BSNT_01593___    701 TCCAATACGAAATGAAGAAAATTTATTCCTTTGAGGAATTTGCGAATCAA    750
                     |.|||||.||||||||.||.|||||.|||||.|||||||||||.|||||.
RBAM_009510__    698 TTCAATATGAAATGAAAAAGATTTACTCCTTCGAGGAATTTGCCAATCAG    747

BSNT_01593___    751 GTAGAATACTATGTCGATGTTGCTTCCGACGCAAGATCTGATTTTGCGGT    800
                     ||.|||||.|||||||||||.||||||||.||.|||||||||||.|||||
RBAM_009510__    748 GTTGAATATTATGTCGATGTGGCTTCCGATGCGAGATCTGATTTCGCGGT    797

BSNT_01593___    801 GTTCCCGGAAATTTTCACAACCCAGCTGATGTCTTTCCTTGAGGAACGGT    850
                     ||||||||||||||||||.||.|||||.|||||||||||.|||||.||.|
RBAM_009510__    798 GTTCCCGGAAATTTTCACGACGCAGCTCATGTCTTTCCTCGAGGAGCGTT    847

BSNT_01593___    851 CACCGAGCTTGGCGGTGCAGAGAATTACCGAGTATACAGAAGATTACATC    900
                     |.|||||..||||..|.|||||.||||||||.|||||.||.||.||.|||
RBAM_009510__    848 CTCCGAGTCTGGCCATTCAGAGGATTACCGAATATACCGAGGACTATATC    897

BSNT_01593___    901 AGCCTGTTTACTGACTTGGCTGTGAAGTATAACGTCAACATTATCGGCGG    950
                     |||||.|||||.||..|.||.|||||.||||||||||||||.||||||||
RBAM_009510__    898 AGCCTCTTTACAGATCTCGCGGTGAAATATAACGTCAACATCATCGGCGG    947

BSNT_01593___    951 ATCTCATTTCGTCGAAGAGGAAGGCAAGATCTATAATATCGCTTACCTGT   1000
                     .||.||.|||||.|||||.||.||.||.||.|||||.|||||.|||.|.|
RBAM_009510__    948 CTCCCACTTCGTTGAAGAAGAGGGGAAAATTTATAACATCGCCTACTTAT    997

BSNT_01593___   1001 TCAGACGGGACGGAACAATCGAAAAGCAATACAAACTCCATATTACGCCG   1050
                     |||||||.|||||.||.||.|||||.|||||.||.||.||.|||||||||
RBAM_009510__    998 TCAGACGTGACGGCACGATTGAAAAACAATATAAGCTTCACATTACGCCG   1047

BSNT_01593___   1051 AATGAACGCAAATGGTGGGGGATCAGCGCAGGAGACCAAGTTCGCGTGTT   1100
                     |||||.||.|||||||||||.||||||||.||||||...||.|||||.||
RBAM_009510__   1048 AATGAGCGGAAATGGTGGGGCATCAGCGCCGGAGACAGGGTGCGCGTATT   1097

BSNT_01593___   1101 TGATACGGACTGCGGGAAAATCGCGATCCAGATCTGTTATGACATTGAAT   1150
                     |||||||||||||||.||.|||||.||.|||||||||||.||.||.||||
RBAM_009510__   1098 TGATACGGACTGCGGAAAGATCGCCATTCAGATCTGTTACGATATCGAAT   1147

BSNT_01593___   1151 TTCCTGAGCTTGCCCGGATTGCGGCTGATAAAGGAGCCAAAATCATCTTT   1200
                     ||||.||||||||..|.|||||.||.|||.||||.||.|||||.||||||
RBAM_009510__   1148 TTCCGGAGCTTGCGAGAATTGCCGCGGATCAAGGGGCGAAAATGATCTTT   1197

BSNT_01593___   1201 ACGCCATTTTGTACAGAAGACCGTCAAGGCTATCTGCGTGTCAGATACTG   1250
                     |||||.||.||.||.||||||||.||||||||..||||.||.||.|||||
RBAM_009510__   1198 ACGCCGTTCTGCACTGAAGACCGCCAAGGCTACTTGCGCGTAAGGTACTG   1247

BSNT_01593___   1251 TTCGCAGGCTAGAGCGGTTGAAAATCAAATTTATACGGTTATCTCTGGAA   1300
                     .||.|||||..|||||||||||||.||||||||.||.||.|||||.||.|
RBAM_009510__   1248 CTCTCAGGCGCGAGCGGTTGAAAACCAAATTTACACCGTCATCTCGGGTA   1297

BSNT_01593___   1301 CGGTCGGAAACCTTCCGCAAACGGAAAACATGGATATCCAATACGCCCAG   1350
                     |||||||||||||.||||||||.|||||.||||||||.||||||||.|||
RBAM_009510__   1298 CGGTCGGAAACCTGCCGCAAACAGAAAATATGGATATTCAATACGCGCAG   1347

BSNT_01593___   1351 TCAGGCATCTTTGCCCCGTCTGATTTTGAATTCGCCCGAGACGGCATTGT   1400
                     ||||.|||.|||||.|||||||||||||||||.|||.|||||||.||.||
RBAM_009510__   1348 TCAGCCATTTTTGCTCCGTCTGATTTTGAATTTGCCAGAGACGGAATCGT   1397

BSNT_01593___   1401 CGGCGAAACAAACCCGAATATTGAAATGGTTGTCATCGGCGATGTTGACC   1450
                     |||.|||||.||.||||||||.||||||||.||.|||||.||.||.||||
RBAM_009510__   1398 CGGTGAAACGAATCCGAATATCGAAATGGTCGTGATCGGGGACGTGGACC   1447

BSNT_01593___   1451 TGGAAATTCTCAGAAGACAGCGCCAAAACGGTACAGTGCGCCAGCTAAAA   1500
                     |.|||||..|.|||||.|||||..|||||||.||.|||||||||||.|||
RBAM_009510__   1448 TTGAAATCTTAAGAAGGCAGCGTGAAAACGGAACCGTGCGCCAGCTGAAA   1497

BSNT_01593___   1501 GACAGACGGCG---TGATATTTATCATATT---CAATATAAAAAATAA   1542
                     |||   |||||   .||||||||.|..|||   ||...||||.||   
RBAM_009510__   1498 GAC---CGGCGCAAAGATATTTACCGGATTACGCATCTTAAATAA---   1539


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