Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01538 and RBAM_009360

See Amino acid alignment / Visit BSNT_01538 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:13
# Commandline: needle
#    -asequence dna-align/BSNT_01538___yhcI.1.9828.seq
#    -bsequence dna-align/RBAM_009360___yhcI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01538___yhcI-RBAM_009360___yhcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01538___yhcI-RBAM_009360___yhcI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01538___yhcI
# 2: RBAM_009360___yhcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 977
# Identity:     675/977 (69.1%)
# Similarity:   675/977 (69.1%)
# Gaps:          64/977 ( 6.6%)
# Score: 2239.0
# 
#
#=======================================

BSNT_01538___      1 ATGCTTAATTTGATTTATAATGAGTGGCTCAAAATTTTCAGCCGTGCCGG     50
                     |||.||||..||||.||||||||.|||.|.||||||||||||||.|.|||
RBAM_009360__      1 ATGTTTAAGCTGATCTATAATGAATGGATAAAAATTTTCAGCCGCGTCGG     50

BSNT_01538___     51 AACATGGGTGATGATCGGAATTCTGGGGCTGACAATGGTTGGATTTGCAT    100
                     .||.||||..|||||.|.||||.|.||..|..|.|||.|.||.|||||..
RBAM_009360__     51 CACGTGGGCTATGATTGTAATTTTAGGCGTTTCGATGATCGGTTTTGCGC    100

BSNT_01538___    101 TTTTGGCGAATCATTTTTCTGCTGGTGAATCAAATTCCCATTGGAAACAA    150
                     ||.||.|.||.|||||..|..|..|.|||.|.|.|.|..||||||||||.
RBAM_009360__    101 TTCTGTCAAACCATTTCACCTCGAGCGAAGCCAGTCCGAATTGGAAACAG    150

BSNT_01538___    151 GAACTTCAAGCACAAAACGCCGAATTAAA---------GAAAGAAATC--    189
                     ||.||.||.||..|||||...|||.|.||         |||.||||.|  
RBAM_009360__    151 GAGCTCCAGGCCGAAAACAAAGAAATGAAACAGCAGATGAAGGAAACCGG    200

BSNT_01538___    190 -AA--AGAAGATCCTTCA----CTGAAAGA-----TGGGTATAAAGAAAC    227
                      ||  |||.|.||.||.|    ||||||.|     |.|..|||||     
RBAM_009360__    201 AAACCAGACGCTCATTGATAACCTGAAACAGAATGTCGCGATAAA-----    245

BSNT_01538___    228 AATCACACTCAACGACTATCGCATCGAGCATAATATCCCT-AGTGACACG    276
                             ||||    ||.||.||.||.|||||.|||||| || ||.||.
RBAM_009360__    246 --------TCAA----TACCGTATGGATCATAACATCCCTGAG-GATACA    282

BSNT_01538___    277 GGCTATACGGTATGGTCTTATGTAACGGATTCAGCAA-----AC--TTTA    319
                     ||.||.||.||.|||||.||.|||.|.|||||..|.|     ||  ||| 
RBAM_009360__    283 GGGTACACAGTGTGGTCATACGTAGCTGATTCTTCGATGATGACTGTTT-    331

BSNT_01538___    320 CCATCCTTACCGGTCTGTTTACTATTATCATCGCGGCCGGAATTGTCGCG    369
                           |.|||||.||||||||.||||||||.||.||.||.|||||.|||
RBAM_009360__    332 ------TGACCGGGCTGTTTACGATTATCATTGCCGCAGGCATTGTGGCG    375

BSNT_01538___    370 AACGAATTTAATTGGGGAACGATTAAGCTATTAATG--ATTCGGCCGCTC    417
                     ||.||.||.||.|||||.|||||.|||||..|  ||  ||.||.||||||
RBAM_009360__    376 AATGAGTTCAACTGGGGCACGATCAAGCTGCT--TGCCATCCGTCCGCTC    423

BSNT_01538___    418 AGTCGTTTTCAAATTTTGATGTCCAAATATATTACAGTTCTCCTGTTTGG    467
                     ||.||||||||.||||||.|.||.||||||||.||.||.||.|||||.||
RBAM_009360__    424 AGCCGTTTTCAGATTTTGCTATCTAAATATATGACGGTGCTGCTGTTCGG    473

BSNT_01538___    468 GCTCCTGTTGCTGTTGATTTTATTTATCGGTTCTACTTTATTAGGGTTGA    517
                     .||.|||.||||..|||||||||||..|||.||..||.|.||.||.|||.
RBAM_009360__    474 ACTGCTGATGCTTGTGATTTTATTTGCCGGCTCCGCTCTGTTGGGATTGG    523

BSNT_01538___    518 TCTTCTTCGGAACGGGTGGTGAAACCGCCGCGAATATTCATTTAATCTAT    567
                     ||||.|||||.||.||.||.||.||.||.||..||.|||||.|..|.||.
RBAM_009360__    524 TCTTTTTCGGTACAGGGGGAGATACTGCGGCTGATGTTCATCTCGTATAC    573

BSNT_01538___    568 AAGGATGGCCATGTCATTGAGCAAAACATGATGGGGCATT--TGGCCACA    615
                     ||.||.|||||.||..||||||||||.||.||  .||.||  |.||.|.|
RBAM_009360__    574 AAAGACGGCCAGGTTTTTGAGCAAAATATCAT--CGCCTTCCTCGCTAAA    621

BSNT_01538___    616 ACGTATCTTTCTGAATCCGTCTCGGCTTTAATGGTGGCGACGATGGCGTT    665
                     ||.|||.|.|.||||||.|||||.|||||.|||.|.||||||||||||||
RBAM_009360__    622 ACATATGTCTATGAATCTGTCTCCGCTTTTATGCTTGCGACGATGGCGTT    671

BSNT_01538___    666 TATGCTGTCTGCGGTATTCAGAAACAGCTCTCTTGCGGTTGGTTTTTCCA    715
                     |||||||||||||||||||.|.||||||||..|.|||||.||.|||||.|
RBAM_009360__    672 TATGCTGTCTGCGGTATTCCGGAACAGCTCATTAGCGGTCGGATTTTCTA    721

BSNT_01538___    716 TCTTCTTGTTGGTTGCCGGTACGATTGCAACTGCATTTATTGCAGCGAAA    765
                     |.||..|.||||||...||.|..|..||.||||.||||.||||..|||||
RBAM_009360__    722 TTTTTCTATTGGTTATGGGAAACACGGCGACTGTATTTCTTGCCACGAAA    771

BSNT_01538___    766 TTTGACTGGGCAAAGTATATATTGTTTGCTAATGTCGACTTGACTCAGTA    815
                     |||||.|||.|.||.|||||.||.||.||.|||...||.|||.||||.||
RBAM_009360__    772 TTTGAATGGACCAAATATATTTTATTCGCCAATACGGATTTGTCTCAATA    821

BSNT_01538___    816 TGTGGATGGCACACCGTTAATAAAAGGGATGACTATGACGTTTTCTCTCG    865
                     |.||.|.||.||.||.|||.||.|.||||||||.|||||.|||||..|.|
RBAM_009360__    822 TATGAACGGGACTCCTTTAGTAGAGGGGATGACGATGACATTTTCGGTTG    871

BSNT_01538___    866 TCATGCTGGCGATCTACTTTATCATCTTCCTGTTGCTTGCTTTCGGAATC    915
                     |.|||||.|.|||.|||||..|.||.||.|||..|||.||.|||||..||
RBAM_009360__    872 TGATGCTTGTGATTTACTTCGTTATTTTTCTGGCGCTCGCATTCGGCGTC    921

BSNT_01538___    916 TTCATGAAGCGGGATATTGCAAACTAA    942
                     |||.|.||.||.||||||||.|.||.|
RBAM_009360__    922 TTCTTAAAACGCGATATTGCCACCTGA    948


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01538 and RBAM_009360

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
