Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01530 and RBAM_009290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:12
# Commandline: needle
# -asequence dna-align/BSNT_01530___yhcA.1.9828.seq
# -bsequence dna-align/RBAM_009290___yhcA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01530___yhcA-RBAM_009290___yhcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01530___yhcA-RBAM_009290___yhcA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01530___yhcA
# 2: RBAM_009290___yhcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1620
# Identity: 1298/1620 (80.1%)
# Similarity: 1298/1620 (80.1%)
# Gaps: 45/1620 ( 2.8%)
# Score: 5160.0
#
#
#=======================================
BSNT_01530___ 1 ATGGCTACAGGCAA--AGAAAA--AAATACAAAAAGCCCTATGACATTGC 46
.|||||| || |||.|| ||.| ||||||.||||..|||||||
RBAM_009290__ 1 GTGGCTA-----AATCAGATAATCAAGT--AAAAAGTCCTAAAACATTGC 43
BSNT_01530___ 47 TGATTGTGCTAATGGCGGGTTTATTTTTGGCAATTCTAAACCAAACACTG 96
|.||||||||.|||||.||.|||||..||||.||..|.||||||||.||.
RBAM_009290__ 44 TTATTGTGCTTATGGCCGGGTTATTCCTGGCGATCTTGAACCAAACGCTT 93
BSNT_01530___ 97 CTTAATGTTGCAATGCCGCACTTAATGACTGAATTTGGCGTAAGTGCAAC 146
|||||.||.||.|||||||||||||||||.||.||.||.||.|||||.||
RBAM_009290__ 94 CTTAACGTGGCGATGCCGCACTTAATGACCGAGTTCGGTGTGAGTGCGAC 143
BSNT_01530___ 147 GACGATTCAGTGGCTGACAACAGGTTACATGCTTGTTAACGGTGTATTGA 196
|||||||||||||||.||.||.||.||||||||.||.||||||||.||||
RBAM_009290__ 144 GACGATTCAGTGGCTTACGACCGGATACATGCTGGTCAACGGTGTTTTGA 193
BSNT_01530___ 197 TTCCGTTATCTGCTTTCCTGATTACACGATTTGGCCAGCGGAGTCTCTTT 246
|||||||||||||.|||.|.|||||.||.||.||.|||.|.||.||||||
RBAM_009290__ 194 TTCCGTTATCTGCGTTCTTAATTACCCGGTTCGGACAGAGAAGCCTCTTT 243
BSNT_01530___ 247 CTCGTCGCGATGTTTTGTTTTAC-GCTCGGTACGTTAGTCTGCGGTATCG 295
|||||.||.|||||.|||||||| || .||.||||||||||||||.||||
RBAM_009290__ 244 CTCGTAGCCATGTTCTGTTTTACAGC-GGGAACGTTAGTCTGCGGAATCG 292
BSNT_01530___ 296 CACCTAACTTCTCTACAATGCTGATCGGCCGTTTGATTCAGGCCGTGGGC 345
|.|||||||||||.||.||||||||||||||.||.||||||||.||.|||
RBAM_009290__ 293 CGCCTAACTTCTCAACCATGCTGATCGGCCGGTTAATTCAGGCGGTCGGC 342
BSNT_01530___ 346 GGAGGTATCTTGCAGCCGCTCGTTATGACAACCATTCTGTTAATTTTCCC 395
||.||||||.||||||||||.||.|||||||||||||||.|.||.|||||
RBAM_009290__ 343 GGCGGTATCCTGCAGCCGCTGGTCATGACAACCATTCTGCTTATCTTCCC 392
BSNT_01530___ 396 GCCTGAAAGCAGGGGGAAAGGAATGGGGATTTTCGGGCTAGCGATGATGT 445
||||||||||||||||||||||||||||||||||||.||.||||||||||
RBAM_009290__ 393 GCCTGAAAGCAGGGGGAAAGGAATGGGGATTTTCGGTCTTGCGATGATGT 442
BSNT_01530___ 446 TTGCTCCAGCGGTCGGCCCGACTCTTTCCGGGTGGATTATTGAGCATTAT 495
|||||||.||||||||.||||||||||||||.|||||.||.||||||||.
RBAM_009290__ 443 TTGCTCCGGCGGTCGGACCGACTCTTTCCGGCTGGATCATCGAGCATTAC 492
BSNT_01530___ 496 ACATGGCGCATTATGTTTTACGGACTTGTGCCGATCGGCGCAATTGTTAT 545
|||||||||||||||||.|||||.|||||.||||||||.|||||.|||||
RBAM_009290__ 493 ACATGGCGCATTATGTTCTACGGCCTTGTTCCGATCGGGGCAATCGTTAT 542
BSNT_01530___ 546 CATTGTGGCTTTCTTCATCTTTAAAAATATGGTGGAGCCGCAAAAAATCA 595
.||..|.||.||||||.|||||||.||..|.|||||.|||||||||||||
RBAM_009290__ 543 TATCATAGCGTTCTTCCTCTTTAAGAACTTAGTGGAACCGCAAAAAATCA 592
BSNT_01530___ 596 AACTCGATA-CTCTTGGCGCAATCCTCTCGATTGTCGGATTCGCCTCCTT 644
|||||||.| || |.||.||.||.||.||.|||||||||||.|||||.||
RBAM_009290__ 593 AACTCGACAGCT-TGGGTGCGATTCTATCCATTGTCGGATTTGCCTCATT 641
BSNT_01530___ 645 ATTATACGGAGTCAGTGAAGCCGG-ATCTGACGGCTGGACCGACCCGATT 693
..|.|||||||||||||||||.|| |.| |||||||||...||.|||||.
RBAM_009290__ 642 GCTTTACGGAGTCAGTGAAGCGGGCAGC-GACGGCTGGGGAGATCCGATC 690
BSNT_01530___ 694 GTATTGTCTACAGTTATTATCGGAGCCATTGCAATTGTTGCTTTTGTTGT 743
||..|||||||.||.|||.||||.|.|||.||.||||..||.|||||..|
RBAM_009290__ 691 GTGCTGTCTACCGTCATTGTCGGTGTCATCGCGATTGCCGCGTTTGTCAT 740
BSNT_01530___ 744 TCAGCAATTGCG-TCATGATGATCCGATGCTTGATTTCAGAGTGTTTAAA 792
|||||||||||| || |||..|.||||||||.||.|||.|.||.||||||
RBAM_009290__ 741 TCAGCAATTGCGCTC-TGAAAAACCGATGCTCGACTTCCGGGTATTTAAA 789
BSNT_01530___ 793 TATGACATTTTCTCACTCTCGAGTGTCATTAATATCATTATTACAGTGGC 842
|||||.|||||||||||.||.|||||.|||||.|||||||||||.||.||
RBAM_009290__ 790 TATGATATTTTCTCACTTTCCAGTGTGATTAACATCATTATTACCGTTGC 839
BSNT_01530___ 843 ACTTTACACTGGTATGTTCCTTTTACCGATTTATCTGCAAAACCTGGTCG 892
.||||||||.||.||||||||..|.||||||||.|||||.|||.|.||||
RBAM_009290__ 840 GCTTTACACAGGAATGTTCCTGCTTCCGATTTACCTGCAGAACTTAGTCG 889
BSNT_01530___ 893 GCTTTACGGCGCTTCAATCCGGTCTGCTT-CTGCTTCCGGGTGCGATCGT 941
|||||||||||||.|||||.||.|| ||| ||..|.|||||.|||||.||
RBAM_009290__ 890 GCTTTACGGCGCTGCAATCGGGCCT-CTTGCTATTGCCGGGCGCGATTGT 938
BSNT_01530___ 942 TATGCTGATTATGTCACCGATCTCAGGTATTTTGTTCGATAAATTCGGAC 991
.||||||||.|||||||||||.||.||||||.||||.||.|||.||||.|
RBAM_009290__ 939 CATGCTGATCATGTCACCGATTTCCGGTATTCTGTTTGACAAAATCGGTC 988
BSNT_01530___ 992 CGAGACCGCTTGCGATTATCGGGCTTCTCGTGACAGTGGTAACAACGTAT 1041
|||||||||||||||||||||||||..||.|.||.||.|.|||.||.|..
RBAM_009290__ 989 CGAGACCGCTTGCGATTATCGGGCTGATCATCACGGTCGCAACGACATTC 1038
BSNT_01530___ 1042 CAATACACGCAATTGACAATTGATACACCATATACACACATCATGCTGAT 1091
||.|||||..|||||||||||||.|||||.||.||.|||||.|||||..|
RBAM_009290__ 1039 CAGTACACAAAATTGACAATTGACACACCTTACACGCACATTATGCTTGT 1088
BSNT_01530___ 1092 CTATTCAATTCGTGCATTTGGTATGTCTCTCTTAATGATGCCAGTCATGA 1141
||||.|.||.||.|||||.||||||||.||.|||||||||||.||.||||
RBAM_009290__ 1089 CTATGCCATCCGCGCATTCGGTATGTCACTGTTAATGATGCCTGTTATGA 1138
BSNT_01530___ 1142 CAGCCGGGATGAACCAGCTTCCTGCCCGTCTGAACAGCCACGGAACGGCG 1191
|||||||.||||||||||||||.||.||..|||||||||||||.||||||
RBAM_009290__ 1139 CAGCCGGAATGAACCAGCTTCCGGCACGGTTGAACAGCCACGGCACGGCG 1188
BSNT_01530___ 1192 ATGAGTAACACGCTTCGCCAAATCAGCGGATCAATCGGAACAAGTTTAAT 1241
|||||.||||||||.|||||.||||||||.|||||||||||||||||.||
RBAM_009290__ 1189 ATGAGCAACACGCTCCGCCAGATCAGCGGTTCAATCGGAACAAGTTTGAT 1238
BSNT_01530___ 1242 TACGACGATTTATACAAACCGGACGACATTCCATTATTCACAAATTGCAG 1291
.||.|||||||||||.|||||.||||||.|.||.|||||.||.|||||.|
RBAM_009290__ 1239 CACAACGATTTATACGAACCGTACGACAATGCACTATTCGCAGATTGCGG 1288
BSNT_01530___ 1292 ATAAAACAAGCACGGCGGACCCGAACTTCCTCCATGCGTTCCAAAATGCA 1341
||||||||||||||||.||.||.|.||||.|.||..|||||||||..||.
RBAM_009290__ 1289 ATAAAACAAGCACGGCTGATCCAAGCTTCATGCAGTCGTTCCAAAGCGCG 1338
BSNT_01530___ 1342 GTTTCGAATTTAATGGTGAATATGAATGTGTCTTATGATACGGCGAAAAC 1391
|||||||||||||||||.||.|||||..||||...||||.||||| ||||
RBAM_009290__ 1339 GTTTCGAATTTAATGGTCAACATGAACATGTCGCTTGATGCGGCG-AAAC 1387
BSNT_01530___ 1392 ATA-TGTGTACTCACATATTTATAAACAC-GCATCACTCGATTCCAATGT 1439
|.| .||.||.||..||.|.||.||| || ||.|||||..|||||||.||
RBAM_009290__ 1388 AAACCGTTTATTCTTATCTCTACAAA-ACAGCTTCACTTAATTCCAACGT 1436
BSNT_01530___ 1440 CATGGGGATAAATGATGCCTTTATGTGGGCAAC----------CTTATTC 1479
.||||||||.|||||.||.|||||||||||.|| .||| ||
RBAM_009290__ 1437 TATGGGGATTAATGACGCGTTTATGTGGGCGACGATCTTTGCGGTTA-TC 1485
BSNT_01530___ 1480 TGTGTAGCAGGTTTGATTTTAAGTATCTTCCTGCGTGACGTCAGAAAAGA 1529
.|.|||| |..|.||..|.|||.||||||||||..|.|||||
RBAM_009290__ 1486 GGCGTAG---------TCCTGAGCCTGTTCTTGCGTGACGTACGGAAAGA 1526
BSNT_01530___ 1530 TAAATTGCGTAAGAAGAAAAAAGAGGAGCTTTCATTACTTCCTGCTCCAA 1579
.|||..|||...||||||||||||||||||.|||||.|||||.||.||.|
RBAM_009290__ 1527 CAAACAGCGGGCGAAGAAAAAAGAGGAGCTGTCATTGCTTCCGGCCCCTA 1576
BSNT_01530___ 1580 AAGAAGCTAAGGAATCTTAA 1599
||||||..||||||||||||
RBAM_009290__ 1577 AAGAAGTGAAGGAATCTTAA 1596
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