Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01528 and RBAM_009280

See Amino acid alignment / Visit BSNT_01528 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:12
# Commandline: needle
#    -asequence dna-align/BSNT_01528___yhbJ.1.9828.seq
#    -bsequence dna-align/RBAM_009280___yhbJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01528___yhbJ-RBAM_009280___yhbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01528___yhbJ-RBAM_009280___yhbJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01528___yhbJ
# 2: RBAM_009280___yhbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 670
# Identity:     577/670 (86.1%)
# Similarity:   577/670 (86.1%)
# Gaps:           8/670 ( 1.2%)
# Score: 2503.0
# 
#
#=======================================

BSNT_01528___      1 ATGATAGAGGATGAAACGAAAGGAGAAAACAAAATGAACAGAGGACGTTT     50
                     |||||||||||.||||||||||||||||||||||||||||||||||||||
RBAM_009280__      1 ATGATAGAGGAAGAAACGAAAGGAGAAAACAAAATGAACAGAGGACGTTT     50

BSNT_01528___     51 AATTCTGACCAACATTATCGGTTTGATTGTTGTTCTTGCAATTATAGCTG    100
                     |||||||||||||||||||||||||||||||||||||||||||||||..|
RBAM_009280__     51 AATTCTGACCAACATTATCGGTTTGATTGTTGTTCTTGCAATTATAGGCG    100

BSNT_01528___    101 GAGGTGCTTACTACTATTATCAAAGCACAAACTACGTAAAAACAGATGAA    150
                     |||||||||||||||||||||||||||||.||||.||||||||.||||||
RBAM_009280__    101 GAGGTGCTTACTACTATTATCAAAGCACACACTATGTAAAAACCGATGAA    150

BSNT_01528___    151 GCAAAAGTAGCGGGCGATATGGCTGCTATTACTGCTCCAGCAGCAGGTAA    200
                     ||||||||.||.||.||.|||||||||||.||.|||||.||.||.|||||
RBAM_009280__    151 GCAAAAGTTGCCGGTGACATGGCTGCTATCACAGCTCCTGCTGCGGGTAA    200

BSNT_01528___    201 AGTATCTGACTGGGATCTGGATGAAGGAAAAACAGT--GAAAAAAGGCGA    248
                     ||||.||||||||.|.||.|||||.||.|||..|||  |.|||||  |||
RBAM_009280__    201 AGTAACTGACTGGAACCTTGATGAGGGGAAAGAAGTAAGCAAAAA--CGA    248

BSNT_01528___    249 CACAGTTGCAAAAATCAAAGGCGAACAAACTGTTGACGTAAAATCCATTA    298
                     |...|||||||||||||||||..|.||||.||.||||||||||.||||.|
RBAM_009280__    249 CGTTGTTGCAAAAATCAAAGGACAGCAAAATGCTGACGTAAAAGCCATCA    298

BSNT_01528___    299 TGGATGGAACAATTGTGAAAAACGAAGTGAAAAACGGACAAACCGTACAA    348
                     |||||||||||||.|||||||||||||||||||||||.||||..||.|||
RBAM_009280__    299 TGGATGGAACAATCGTGAAAAACGAAGTGAAAAACGGCCAAATGGTGCAA    348

BSNT_01528___    349 GCTGGTACAACAATTGCACA--AACGATTGACATGGACAACCTATACATC    396
                     ||.|||||.||||||||.||  ||  |||||||||.|..||||.||||||
RBAM_009280__    349 GCCGGTACGACAATTGCCCAGGAA--ATTGACATGAAACACCTTTACATC    396

BSNT_01528___    397 ACAGCAAATATTAAAGAAACAGATATTGCGGATATTGAAGTAGGAAATAG    446
                     ||.|||||.||||||||||||||.|||...||.||||||||||||||.|.
RBAM_009280__    397 ACTGCAAACATTAAAGAAACAGACATTAGAGACATTGAAGTAGGAAACAA    446

BSNT_01528___    447 TGTAGACGTTGTAGTTGACGGAGACCCTGATACAACATTTGACGGTACTG    496
                     .||||||||..|.||||||||.||||||.||||||||||||||||.||.|
RBAM_009280__    447 AGTAGACGTAATTGTTGACGGCGACCCTAATACAACATTTGACGGAACAG    496

BSNT_01528___    497 TGGAAGAAATTGGCTATGCGACTAACTCAACTTTTGATATGCTTCCTTCT    546
                     |.||||||||.||.||||||||.||.|||||.|||||||||||.||||||
RBAM_009280__    497 TAGAAGAAATCGGTTATGCGACAAATTCAACATTTGATATGCTGCCTTCT    546

BSNT_01528___    547 ACAAATTCAAGCGGAAACTACACAAAAGTAACACAAAAAATTCCTGTGAA    596
                     .||||.||||||||.|||||||||||||||||.||||||.|||||||.||
RBAM_009280__    547 TCAAACTCAAGCGGCAACTACACAAAAGTAACGCAAAAAGTTCCTGTTAA    596

BSNT_01528___    597 AATTTCAATCAAAAACCCATCTGATAAGGTGCTTCCTGGAATGAATGCAT    646
                     |||||||.|||..|||||||||||.||||||||||||||.|||||.||||
RBAM_009280__    597 AATTTCACTCAGCAACCCATCTGACAAGGTGCTTCCTGGTATGAACGCAT    646

BSNT_01528___    647 CTGTTAAAATTTCTGAGTAA    666
                     ||||.|||||.|||||.|||
RBAM_009280__    647 CTGTAAAAATCTCTGAATAA    666


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.