Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01517 and RBAM_009220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:11
# Commandline: needle
# -asequence dna-align/BSNT_01517.1.9828.seq
# -bsequence dna-align/RBAM_009220___yhbD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01517-RBAM_009220___yhbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01517-RBAM_009220___yhbD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01517
# 2: RBAM_009220___yhbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 696
# Identity: 481/696 (69.1%)
# Similarity: 481/696 (69.1%)
# Gaps: 78/696 (11.2%)
# Score: 1704.5
#
#
#=======================================
BSNT_01517 1 ---------------------------------------ATGGAAGAACA 11
|||||.|||||
RBAM_009220__ 1 GTGTTATGTTACAATACATTCATCGAAGGAGCTGGATTCATGGAGGAACA 50
BSNT_01517 12 ATTAATCTCTAAAAAAGAATTACTTGAAAGAACATCGATTTCATACGGTC 61
|.|.||.||.|||||||||||.||.|||..||||||.|||||||||||.|
RBAM_009220__ 51 ACTGATTTCAAAAAAAGAATTGCTGGAAGAAACATCAATTTCATACGGGC 100
BSNT_01517 62 AGCTGTATCGATGGAAGCGGAAAAACTTAATACCTGAGGAATGGTTTATT 111
|||||||.||.|||||.||||||||.|||||.|||||.|||||||||||.
RBAM_009220__ 101 AGCTGTACCGCTGGAAACGGAAAAATTTAATTCCTGAAGAATGGTTTATC 150
BSNT_01517 112 CGTAAATCCACATTTACAGGGCAAGAGACGTTTTTTCCGAGAGAGGAGAT 161
||.|||||.|||||||||||.||.||.||.|||||||||||||.|||.||
RBAM_009220__ 151 CGAAAATCAACATTTACAGGCCAGGAAACATTTTTTCCGAGAGCGGAAAT 200
BSNT_01517 162 TTTAAAACGTATATCAATGATTCAAAAGATGAAAGAAAATTTGTCTTTGG 211
.||||||||.||.||||..||.||.||.||||||||||||.|||||||||
RBAM_009220__ 201 ATTAAAACGCATCTCAAAAATACAGAAAATGAAAGAAAATCTGTCTTTGG 250
BSNT_01517 212 ATGAAATGAGGGAAATGCTGTCGCCGAAAATGAAGGATGTCAGCATGACC 261
||||||||||.|||||||||||.|||.||||||..|||||||..||.||.
RBAM_009220__ 251 ATGAAATGAGAGAAATGCTGTCTCCGCAAATGACTGATGTCAATATAACG 300
BSNT_01517 262 GCTGATGAATTGCTTCATAAAGGTTTGGTTTC-AAGGCCTGCTCTTGAAG 310
.|||..||..|||||||.||.||..||.|||| ||.||| ||.||..|||
RBAM_009220__ 301 TCTGCGGAGCTGCTTCAAAAGGGACTGATTTCAAAAGCC-GCGCTGCAAG 349
BSNT_01517 311 CCTATTCAGAAGACGGAG-GA-AGTCCGGTTTTTTCA--TCCAGCGATTT 356
..|||...||||||||.| || | |||| |||.|||...|
RBAM_009220__ 350 TTTATGGCGAAGACGGCGTGACA----------TTCACGTCCCGCGCGCT 389
BSNT_01517 357 GCTTTCGCTATATGTGCTTGAGGGACTGCTGCAGTCTGGAAATGTCAGCC 406
|||.||..|||||||||||||.|||||..|||..||.||.|||.||||||
RBAM_009220__ 390 GCTGTCTTTATATGTGCTTGAAGGACTTTTGCGATCGGGCAATATCAGCC 439
BSNT_01517 407 TTGCAGAAGCAAAAATGGCTGCAGAGGTATTAAAGAAGCATGATAATGAA 456
|||..||||.||||.||||.||||.|||..|.||.|.|.||||...|...
RBAM_009220__ 440 TTGAGGAAGGAAAATTGGCGGCAGGGGTGCTGAAAACGTATGAGGCTTCC 489
BSNT_01517 457 GAGATTGAAA--AACAGACGGAGCTGATTGTGCTCCGCAAGCTCGGTGTC 504
|| |.||||| || |.||||||||..|..|||||||.|||||.||.||.
RBAM_009220__ 490 GA-ACTGAAAGCAA-ATACGGAGCTTGTCATGCTCCGAAAGCTTGGCGTA 537
BSNT_01517 505 ACAACTTGTTTTATAGCGGCTGCGGCGGACAGCATTTTGTTTGAATCATC 554
||.||.||.||.||.||.|..||| |.||| .|||||.||||||.|..|
RBAM_009220__ 538 ACGACGTGCTTCATCGCCGACGCG--GAACA-TATTTTATTTGAACCGAC 584
BSNT_01517 555 CGTAAAGGTTGTGGAACGGGT--AGATTTATTAAAAGCT------TCAGA 596
.||.||.||.||.|||||||| .|.|| ||| ||.||
RBAM_009220__ 585 TGTCAAAGTGGTTGAACGGGTGGCGCTT--------GCTGCGGCATCGGA 626
BSNT_01517 597 GGAATTAAAAACAACATTTATGCAGGAGGGCCATCAATGGATGTAG 642
.|||||||||||.|.||..||||||||||.|||||||||||.|||.
RBAM_009220__ 627 AGAATTAAAAACGAAATGGATGCAGGAGGACCATCAATGGAAGTAA 672
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