Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01517 and RBAM_009220

See Amino acid alignment / Visit BSNT_01517 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:11
# Commandline: needle
#    -asequence dna-align/BSNT_01517.1.9828.seq
#    -bsequence dna-align/RBAM_009220___yhbD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01517-RBAM_009220___yhbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01517-RBAM_009220___yhbD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01517
# 2: RBAM_009220___yhbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 696
# Identity:     481/696 (69.1%)
# Similarity:   481/696 (69.1%)
# Gaps:          78/696 (11.2%)
# Score: 1704.5
# 
#
#=======================================

BSNT_01517         1 ---------------------------------------ATGGAAGAACA     11
                                                            |||||.|||||
RBAM_009220__      1 GTGTTATGTTACAATACATTCATCGAAGGAGCTGGATTCATGGAGGAACA     50

BSNT_01517        12 ATTAATCTCTAAAAAAGAATTACTTGAAAGAACATCGATTTCATACGGTC     61
                     |.|.||.||.|||||||||||.||.|||..||||||.|||||||||||.|
RBAM_009220__     51 ACTGATTTCAAAAAAAGAATTGCTGGAAGAAACATCAATTTCATACGGGC    100

BSNT_01517        62 AGCTGTATCGATGGAAGCGGAAAAACTTAATACCTGAGGAATGGTTTATT    111
                     |||||||.||.|||||.||||||||.|||||.|||||.|||||||||||.
RBAM_009220__    101 AGCTGTACCGCTGGAAACGGAAAAATTTAATTCCTGAAGAATGGTTTATC    150

BSNT_01517       112 CGTAAATCCACATTTACAGGGCAAGAGACGTTTTTTCCGAGAGAGGAGAT    161
                     ||.|||||.|||||||||||.||.||.||.|||||||||||||.|||.||
RBAM_009220__    151 CGAAAATCAACATTTACAGGCCAGGAAACATTTTTTCCGAGAGCGGAAAT    200

BSNT_01517       162 TTTAAAACGTATATCAATGATTCAAAAGATGAAAGAAAATTTGTCTTTGG    211
                     .||||||||.||.||||..||.||.||.||||||||||||.|||||||||
RBAM_009220__    201 ATTAAAACGCATCTCAAAAATACAGAAAATGAAAGAAAATCTGTCTTTGG    250

BSNT_01517       212 ATGAAATGAGGGAAATGCTGTCGCCGAAAATGAAGGATGTCAGCATGACC    261
                     ||||||||||.|||||||||||.|||.||||||..|||||||..||.||.
RBAM_009220__    251 ATGAAATGAGAGAAATGCTGTCTCCGCAAATGACTGATGTCAATATAACG    300

BSNT_01517       262 GCTGATGAATTGCTTCATAAAGGTTTGGTTTC-AAGGCCTGCTCTTGAAG    310
                     .|||..||..|||||||.||.||..||.|||| ||.||| ||.||..|||
RBAM_009220__    301 TCTGCGGAGCTGCTTCAAAAGGGACTGATTTCAAAAGCC-GCGCTGCAAG    349

BSNT_01517       311 CCTATTCAGAAGACGGAG-GA-AGTCCGGTTTTTTCA--TCCAGCGATTT    356
                     ..|||...||||||||.| || |          ||||  |||.|||...|
RBAM_009220__    350 TTTATGGCGAAGACGGCGTGACA----------TTCACGTCCCGCGCGCT    389

BSNT_01517       357 GCTTTCGCTATATGTGCTTGAGGGACTGCTGCAGTCTGGAAATGTCAGCC    406
                     |||.||..|||||||||||||.|||||..|||..||.||.|||.||||||
RBAM_009220__    390 GCTGTCTTTATATGTGCTTGAAGGACTTTTGCGATCGGGCAATATCAGCC    439

BSNT_01517       407 TTGCAGAAGCAAAAATGGCTGCAGAGGTATTAAAGAAGCATGATAATGAA    456
                     |||..||||.||||.||||.||||.|||..|.||.|.|.||||...|...
RBAM_009220__    440 TTGAGGAAGGAAAATTGGCGGCAGGGGTGCTGAAAACGTATGAGGCTTCC    489

BSNT_01517       457 GAGATTGAAA--AACAGACGGAGCTGATTGTGCTCCGCAAGCTCGGTGTC    504
                     || |.|||||  || |.||||||||..|..|||||||.|||||.||.||.
RBAM_009220__    490 GA-ACTGAAAGCAA-ATACGGAGCTTGTCATGCTCCGAAAGCTTGGCGTA    537

BSNT_01517       505 ACAACTTGTTTTATAGCGGCTGCGGCGGACAGCATTTTGTTTGAATCATC    554
                     ||.||.||.||.||.||.|..|||  |.||| .|||||.||||||.|..|
RBAM_009220__    538 ACGACGTGCTTCATCGCCGACGCG--GAACA-TATTTTATTTGAACCGAC    584

BSNT_01517       555 CGTAAAGGTTGTGGAACGGGT--AGATTTATTAAAAGCT------TCAGA    596
                     .||.||.||.||.||||||||  .|.||        |||      ||.||
RBAM_009220__    585 TGTCAAAGTGGTTGAACGGGTGGCGCTT--------GCTGCGGCATCGGA    626

BSNT_01517       597 GGAATTAAAAACAACATTTATGCAGGAGGGCCATCAATGGATGTAG    642
                     .|||||||||||.|.||..||||||||||.|||||||||||.|||.
RBAM_009220__    627 AGAATTAAAAACGAAATGGATGCAGGAGGACCATCAATGGAAGTAA    672


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.