Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01516 and RBAM_009210

See Amino acid alignment / Visit BSNT_01516 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:11
# Commandline: needle
#    -asequence dna-align/BSNT_01516___cspR.1.9828.seq
#    -bsequence dna-align/RBAM_009210___cspR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01516___cspR-RBAM_009210___cspR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01516___cspR-RBAM_009210___cspR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01516___cspR
# 2: RBAM_009210___cspR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 478
# Identity:     396/478 (82.8%)
# Similarity:   396/478 (82.8%)
# Gaps:           8/478 ( 1.7%)
# Score: 1672.5
# 
#
#=======================================

BSNT_01516___      1 GTGGCATTACATGTCGTTTTATATCAACCAGAAATTCCCGCTAACACAGG     50
                     |||||||||||||||||||||||||||||.|||||.||.||.||.||.||
RBAM_009210__      1 GTGGCATTACATGTCGTTTTATATCAACCCGAAATCCCGGCCAATACGGG     50

BSNT_01516___     51 GAATATTGCACGTACTTGTGCAGCAACCAATACAACGCTACACCTGATTC    100
                     .|||||.||||||||||||||.|||||..|.||||||||.||..||||.|
RBAM_009210__     51 AAATATCGCACGTACTTGTGCGGCAACAGACACAACGCTTCATTTGATCC    100

BSNT_01516___    101 GTCCGCTCGGCTTTTCAACGGATGATAAAATGCTGAAGCGTGCCGGACTC    150
                     |.||||||||.||.||.||.||||||||||||||||||||.|||||||||
RBAM_009210__    101 GCCCGCTCGGATTCTCGACCGATGATAAAATGCTGAAGCGCGCCGGACTC    150

BSNT_01516___    151 GATTATTGGGAGTTTGTTAATGTTGTGTATCATGATTCGTTAGAAGAATT    200
                     ||||||||||||||.||.||.||.||.|||||||||||.||.|||||.||
RBAM_009210__    151 GATTATTGGGAGTTCGTCAAGGTCGTATATCATGATTCATTGGAAGAGTT    200

BSNT_01516___    201 GTTTGAGGCATATGAAAAAGGCCAGTTTTTCTTTATTACAAAATTTGGCC    250
                     .||||||||||||||.||.||..||||||||||.|||||||||||.||||
RBAM_009210__    201 ATTTGAGGCATATGAGAACGGAAAGTTTTTCTTCATTACAAAATTCGGCC    250

BSNT_01516___    251 AGCAGCCTCATACATCATTTGATTACACTGATCTTGACGAGGATTATTTC    300
                     |..||||.||.|||||||||||||||.|..||...||.||.||.|.||||
RBAM_009210__    251 AAAAGCCGCACACATCATTTGATTACTCAAATACGGAGGAAGACTTTTTC    300

BSNT_01516___    301 TTCGTGTTCGGAAGAGAAACAAGCGGTTTGCCAAAGGATTTAATTCAAAA    350
                     |||||.|||||.||||||||.|||||..|.||.||.||.||.||..||||
RBAM_009210__    301 TTCGTATTCGGCAGAGAAACGAGCGGACTTCCGAAAGAATTGATCGAAAA    350

BSNT_01516___    351 TAATATGGACCGCTGCCTGCGTCTTCCGATGACAGAGCATGTCAGATCGT    400
                     .|||||||||||||||||||||||.||||||||.||||||||.|||||.|
RBAM_009210__    351 CAATATGGACCGCTGCCTGCGTCTGCCGATGACCGAGCATGTGAGATCAT    400

BSNT_01516___    401 TAAACCTGTCCAATACTGCCGCGATTCTTGTTTATGAAGCGCTGCGCCAG    450
                     |||||||||||||.||.||||||||||||||.||||||||||||||||||
RBAM_009210__    401 TAAACCTGTCCAACACGGCCGCGATTCTTGTATATGAAGCGCTGCGCCAG    450

BSNT_01516___    451 CAAAATTACCGTGATTTAA----AATAG    474
                     |||||||||.|.|||||.|    |    
RBAM_009210__    451 CAAAATTACAGAGATTTGACGTGA----    474


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