Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_01515 and RBAM_009200

See Amino acid alignment / Visit BSNT_01515 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:11
# Commandline: needle
#    -asequence dna-align/BSNT_01515___yhbB.1.9828.seq
#    -bsequence dna-align/RBAM_009200___yhbB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01515___yhbB-RBAM_009200___yhbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01515___yhbB-RBAM_009200___yhbB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01515___yhbB
# 2: RBAM_009200___yhbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 941
# Identity:     705/941 (74.9%)
# Similarity:   705/941 (74.9%)
# Gaps:          52/941 ( 5.5%)
# Score: 2592.0
# 
#
#=======================================

BSNT_01515___      1 TTGAAGCACATTTTAGAACAATTAGCGGAGGAGCGGCTGGGCTTTCTGGT     50
                     ||||||||.|||.|.|||.|.||||||||||..|||||  .|.||.|  |
RBAM_009200__      1 TTGAAGCATATTATTGAAGATTTAGCGGAGGCCCGGCT--TCATTAT--T     46

BSNT_01515___     51 T----AACGGGCATGCTATGAGACA------GGAGTCTCAAGTCGGAGAC     90
                     |    |||||....|..|||||.||      |.||.|      |||.||.
RBAM_009200__     47 TAATCAACGGAACCGAGATGAGGCACAATGGGCAGCC------CGGCGAT     90

BSNT_01515___     91 CTTAAAGTCATGGAGCGTAAGAAAAAGCTTCTGGAAAAACGTAAAGTTGA    140
                     |||.|.|||.||..|.|.||.|||.||||..|.||||||||.||||||||
RBAM_009200__     91 CTTGAGGTCCTGACGAGAAAAAAAGAGCTGTTTGAAAAACGGAAAGTTGA    140

BSNT_01515___    141 CATCATAAAAGCGAAAGCAAAGGCCGTGATT-----AATCATGTGCGGGT    185
                     ||||.|.||||||||.|||||.|||||.|||     ||.||     |..|
RBAM_009200__    141 CATCGTGAAAGCGAAGGCAAAAGCCGTCATTGTCAAAAGCA-----GCCT    185

BSNT_01515___    186 TGAGGATGACGGAACGACCTGCCTTTCGTATACCATTCATTACGAATACG    235
                     ||||||.|||||.|||...|||.|...|||.||.|||||||.||||||..
RBAM_009200__    186 TGAGGACGACGGCACGTTATGCGTCATGTACACGATTCATTTCGAATATT    235

BSNT_01515___    236 TGTGTAAGGAACAAGA-TGACAGCTTGTATATAGAAGAGCACATAGAGGA    284
                     ||||.|||||.||.|| .||||.||| ||..||||||||||.||.|||||
RBAM_009200__    236 TGTGCAAGGAGCATGACGGACACCTT-TACTTAGAAGAGCAGATTGAGGA    284

BSNT_01515___    285 GCGAATGGCTTTCCTGTATGATCACATTTTGATTAGTGATCAGGAAATTG    334
                     .||.|..||.||.||.||||||||..|||||||||..||.|.||||.|..
RBAM_009200__    285 ACGGACTGCATTTCTCTATGATCAGCTTTTGATTAAAGACCGGGAAGTAA    334

BSNT_01515___    335 CGAAAAAGCCGGCTGGATTTCATGAAGGGACCAGTATTATTGACTATTCT    384
                     .||||||.|||||.||||||..|||.||.|.|||..|.|||||.||   |
RBAM_009200__    335 AGAAAAAACCGGCGGGATTTTCTGACGGAAACAGCGTAATTGAATA---T    381

BSNT_01515___    385 GAAGCTGAAGAG-GAAAGAGAAGCGTTTGGCAGGGCTTTTCAATACGATC    433
                     ||    |..||| |||.|.||||..||.||..||||.|||||||||||.|
RBAM_009200__    382 GA----GCGGAGTGAACGGGAAGATTTCGGGCGGGCGTTTCAATACGACC    427

BSNT_01515___    434 GTCTCGGC-GCTGTCCAATATGCCGAGAAATTTTGGAACAAGCGCAATCC    482
                     |||| ||| ||.||.||.||.||.|||||.||||||||.||.||.|||||
RBAM_009200__    428 GTCT-GGCTGCCGTGCAGTACGCGGAGAAGTTTTGGAATAAACGAAATCC    476

BSNT_01515___    483 TGCTTATAAAAATTTCAGCGATAACTGTACAAATTTTATTTCTCAGTGTC    532
                     .||||||||||||||||||||.|||||.||.|||||||||||.||.|||.
RBAM_009200__    477 CGCTTATAAAAATTTCAGCGACAACTGCACCAATTTTATTTCCCAATGTT    526

BSNT_01515___    533 TTCATGCAGGAGGCGCGCCGATGCGCGGTCATCCGAACAGGGGATCAGGC    582
                     |.|||||.|||...||.||||||||.||.|||||||||||.||.||||||
RBAM_009200__    527 TACATGCCGGAAAAGCACCGATGCGGGGGCATCCGAACAGAGGCTCAGGC    576

BSNT_01515___    583 TGGTGGATGAAACAAAGCTCATGGAGCTACAGCTGGACGGTGGCGCACTC    632
                     |||||||||||...||||||.||||||||||||||||||||.|||||.||
RBAM_009200__    577 TGGTGGATGAAGGCAAGCTCGTGGAGCTACAGCTGGACGGTCGCGCATTC    626

BSNT_01515___    633 TATGAAAATGTATTTGTCGAATTCAAAGGCCGGACTGCGTGCGGTGCGGG    682
                     .|||||.||||||.||.|..|.||.|||||.||.||.||.|||||||..|
RBAM_009200__    627 GATGAAGATGTATCTGGCCCAATCCAAGGCAGGGCTTCGCGCGGTGCAAG    676

BSNT_01515___    683 TGAAATC---AGCGGAAGAACTGATGCCGGGCGATGTGATTTGCTATGAC    729
                     |   |||   |||.||||||||||||||.||.|||.|.|||||||||||.
RBAM_009200__    677 T---ATCAAGAGCCGAAGAACTGATGCCCGGAGATATCATTTGCTATGAT    723

BSNT_01515___    730 TTCGAAGGAGACGGCCGCTTTAATCATACAACGATTGTCGTGGCAAAGGA    779
                     ||.|||||.||||||||.|||||||||||..||||.||.||.||.||.||
RBAM_009200__    724 TTTGAAGGGGACGGCCGTTTTAATCATACGGCGATCGTGGTCGCGAAAGA    773

BSNT_01515___    780 CAAAGGCAATATGCCGCTTGTCAACGCCCAGACCTATGACAGCCGGATGA    829
                     .|||.|||||||||||||||||||.|||||.||.|||||||||.||||||
RBAM_009200__    774 TAAAAGCAATATGCCGCTTGTCAATGCCCAAACGTATGACAGCAGGATGA    823

BSNT_01515___    830 GGTATTGGTCATATGAGGATTCTACAGCATACACGCAGTCAATACGATAT    879
                     |.||||||||||||||||||||.||.||.||.||.|..||.||..|||||
RBAM_009200__    824 GATATTGGTCATATGAGGATTCAACGGCGTATACTCCTTCCATCAGATAT    873

BSNT_01515___    880 GCCTTTTTTCATAT--CGTTGATGATACGACAAAAGAGTAA    918
                     ||.|||||||||||  ||  |||||||||||||||||||||
RBAM_009200__    874 GCGTTTTTTCATATTACG--GATGATACGACAAAAGAGTAA    912


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01515 and RBAM_009200

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
