Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01505 and RBAM_009140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:11
# Commandline: needle
# -asequence dna-align/BSNT_01505___ssuD.1.9828.seq
# -bsequence dna-align/RBAM_009140___ssuD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01505___ssuD-RBAM_009140___ssuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01505___ssuD-RBAM_009140___ssuD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01505___ssuD
# 2: RBAM_009140___ssuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1151
# Identity: 872/1151 (75.8%)
# Similarity: 872/1151 (75.8%)
# Gaps: 34/1151 ( 3.0%)
# Score: 3249.0
#
#
#=======================================
BSNT_01505___ 1 ATGGAAATTCTTTGGTTTATACCGACTCATGGAGACGCGAGATATTTAGG 50
|||||.||||||||||||||.|||||.|||||.||||...|.||||||||
RBAM_009140__ 1 ATGGAGATTCTTTGGTTTATTCCGACGCATGGTGACGGCCGGTATTTAGG 50
BSNT_01505___ 51 ATCTGAAA-GTGATGGACGGACTGCGGATCATCTTTACTTTAAACAAGTC 99
..|..||| |.||.||| |.||.||||||||||||||.|||||.|||||.
RBAM_009140__ 51 GACGCAAACGGGAGGGA-GAACGGCGGATCATCTTTATTTTAAGCAAGTG 99
BSNT_01505___ 100 GCGCAGGCGGCAGACAGGCTGGGATATACAGGAGTTCTTCTGCCGACGGG 149
||.||||||||.|||||.||.||.|||||.||.||.||.||||||||.||
RBAM_009140__ 100 GCACAGGCGGCGGACAGACTCGGGTATACGGGGGTGCTGCTGCCGACCGG 149
BSNT_01505___ 150 AAGATCGTGCGAGGACCCGTGGCTTACAGCGTCGGCACTGGCAGGAGAAA 199
.|||||.||.||.|||||||||||.||.||..|.||..|.||.||.||||
RBAM_009140__ 150 GAGATCATGTGAAGACCCGTGGCTGACGGCTGCCGCTTTAGCGGGGGAAA 199
BSNT_01505___ 200 CAAAGGACTTAAAGTTTTTAGTCGCGGTAAGACCTGGTTTAATGCAGCCT 249
|.|..|||||.||.||||||||.|||||..|.||.||..|.||||||||.
RBAM_009140__ 200 CGAGTGACTTGAAATTTTTAGTGGCGGTCCGTCCGGGACTGATGCAGCCG 249
BSNT_01505___ 250 TCTCTGGCAGCCAGAATGACGTCCACTCTAGACCGCATTTCAGACGGCCG 299
|||.|.||.||.||||||.||||.||..|.||.||..|.|||||||||||
RBAM_009140__ 250 TCTGTCGCCGCGAGAATGGCGTCGACAATGGATCGGCTGTCAGACGGCCG 299
BSNT_01505___ 300 GCTGCTGATCAACGTTGTGGCTGGGGGCGATCCGTATGAGCTGGCAGGCG 349
..||||..|.||.||.||.||.||.||.|||||.|||||.|||||.||.|
RBAM_009140__ 300 TTTGCTCGTAAATGTCGTAGCGGGCGGAGATCCTTATGAACTGGCGGGAG 349
BSNT_01505___ 350 ATGGCCTGTTTATCAGCCATGATGAGCGCTACGAGGCAACAGACGAATTT 399
|.||..|||||||||||||.|||||.||.||..||||.||.||.||||||
RBAM_009140__ 350 ACGGTATGTTTATCAGCCACGATGAACGTTATAAGGCGACTGAAGAATTT 399
BSNT_01505___ 400 TTAACCGTTTGGCGGAGACTTTTGCAGGGAGAAACGGTTTCCTATGAAGG 449
||||||||.|||||..||||..|||.|||.||||||||..|.||||||||
RBAM_009140__ 400 TTAACCGTCTGGCGCGGACTCATGCGGGGCGAAACGGTGACATATGAAGG 449
BSNT_01505___ 450 AAAGCATATAAAAGTGGAAAACAGCAATCTACTTTTCCCGCCGCAGCAAG 499
..|.|||||.||||||||||||||||||||.||.||.|||||..||||..
RBAM_009140__ 450 GGACCATATCAAAGTGGAAAACAGCAATCTGCTGTTTCCGCCAAAGCAGT 499
BSNT_01505___ 500 AGCCGCATCCGCCCATCTATTTCGGTGGTTCGTCACAGGCTGGGATTGAA 549
..|||||||||||..|.||||||||.|||||.||||||||.||.|||||.
RBAM_009140__ 500 CTCCGCATCCGCCATTATATTTCGGCGGTTCATCACAGGCGGGAATTGAG 549
BSNT_01505___ 550 GCTGCCGCAAAGCATACAGACGTGTACTTGACATGGGGTGAGCCGCCTGA 599
|||||.||.||.||||||||.||.||.||.||||||||.||||||||.||
RBAM_009140__ 550 GCTGCGGCGAAACATACAGATGTCTATTTAACATGGGGAGAGCCGCCGGA 599
BSNT_01505___ 600 ACAAGTAAAAGAAAAAATAGAAAGAGTCAAAAAGCAAGCGGCAAAAGAAG 649
.||.|||||||||||.||.||||..||.|||||.||.||.||.||.||||
RBAM_009140__ 600 GCAGGTAAAAGAAAAGATTGAAACCGTTAAAAAACAGGCTGCCAAGGAAG 649
BSNT_01505___ 650 GGA----GATCCGTTCGATTTGGCATTAGGCTGCATGTCATTGCCCGTGA 695
|.| |||.||| ||||||||.||.||.||.||.||||.|||.||
RBAM_009140__ 650 GAAGGACGATGCGT----TTTGGCATCAGACTTCACGTGATTGTCCGGGA 695
BSNT_01505___ 696 AACTGAACAAGAGGCATGGGAAGCGGCAGAGCGCTTGATCAGCCACTTGG 745
.|||||..|||||||||||||||||||.||.||.||.||||||||.||.|
RBAM_009140__ 696 GACTGAGGAAGAGGCATGGGAAGCGGCTGAACGATTAATCAGCCATTTAG 745
BSNT_01505___ 746 ATGATGACACCATTGCCAAAGCGCAGGCTGCTTTGAGC-------CGTTA 788
|.||.||.||.|||||.|||||||||||||| || ||.|
RBAM_009140__ 746 ACGAAGAGACGATTGCGAAAGCGCAGGCTGC-----GCTCCGGCGCGCT- 789
BSNT_01505___ 789 CGACTCTTCAGGCCAGCAGCGGATGGCCGTCCTTCATCAAGGAGATCGGA 838
||.|||||.||.||..|.||||||||||..||.|||.|.||.||.||..
RBAM_009140__ 790 -GATTCTTCGGGACAAAAACGGATGGCCGGTCTCCATAACGGTGACCGCT 838
BSNT_01505___ 839 CGAAGCTTGAAATCAGCCCGAATCTGTGGGCGGGGATCGGTCTGGTCAGA 888
||||||||||.||||||||||||||.|||||.||.|||||.|||||||||
RBAM_009140__ 839 CGAAGCTTGAGATCAGCCCGAATCTCTGGGCCGGCATCGGACTGGTCAGA 888
BSNT_01505___ 889 GGAGGGGCAGGAACAGCCCTTGTCGGTGATCCGCAGACGATTGCTAACCG 938
||.||.||.||.||.||.||||||||||||||||||||..|.||||..||
RBAM_009140__ 889 GGCGGAGCGGGCACGGCGCTTGTCGGTGATCCGCAGACTGTCGCTACTCG 938
BSNT_01505___ 939 GATAGCGGAGTACCAGGCACTCGGCATAGAATCGTTTATATTCTCAGGCT 988
.||....|||||.||||||||||||||.||.||||||||.||.|||||||
RBAM_009140__ 939 AATTTTAGAGTATCAGGCACTCGGCATTGAGTCGTTTATCTTTTCAGGCT 988
BSNT_01505___ 989 ATCCGCATTTAGAAGAAGCGTATTATTTTGCAGAGCTTGTATTTCCGCTT 1038
|.||||||.|.||||||||.||||||.|.||.||.||.||.|||||||||
RBAM_009140__ 989 ACCCGCATCTGGAAGAAGCTTATTATCTGGCTGAACTCGTGTTTCCGCTT 1038
BSNT_01505___ 1039 TTGCCGTTTGAAAATGATCGGACGAGAAAGCTTCAGAACAAAAGGGGAGA 1088
.||||||||.|.|||||.|||||.|.|||||||.||..||.|..|||.||
RBAM_009140__ 1039 CTGCCGTTTCAGAATGAACGGACTAAAAAGCTTGAGCGCAGACTGGGTGA 1088
BSNT_01505___ 1089 AGCGGTAGGAAAC-ACTTATTTTGTCAA----AGAGAAA---AATGCATG 1130
|||..|.||.||| || .|||||| ||| |.||||| ||.|..||
RBAM_009140__ 1089 AGCAATGGGCAACGAC-CATTTTG-CAAGAGGAAAGAAAGCGAAAGTCTG 1136
BSNT_01505___ 1131 A 1131
|
RBAM_009140__ 1137 A 1137
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