Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01498 and RBAM_009090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:10
# Commandline: needle
# -asequence dna-align/BSNT_01498___katA.1.9828.seq
# -bsequence dna-align/RBAM_009090___katA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01498___katA-RBAM_009090___katA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01498___katA-RBAM_009090___katA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01498___katA
# 2: RBAM_009090___katA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1454
# Identity: 1214/1454 (83.5%)
# Similarity: 1214/1454 (83.5%)
# Gaps: 10/1454 ( 0.7%)
# Score: 5116.5
#
#
#=======================================
BSNT_01498___ 1 ATGAGTTCAAATAAACTGACAACTAGCTGGGGCGCTCCGGTTGGAGATAA 50
|||||||||||||||.|||||||.||||||||||||||.||.||||||||
RBAM_009090__ 1 ATGAGTTCAAATAAATTGACAACCAGCTGGGGCGCTCCTGTCGGAGATAA 50
BSNT_01498___ 51 TCAAAACTCAATGACTGCCGGTTCTCGCGGACCAACTTTAATTCAAGATG 100
.||||||||||||||.|||||...||||||.||..|||||||.|||||.|
RBAM_009090__ 51 CCAAAACTCAATGACGGCCGGCGATCGCGGTCCTGCTTTAATACAAGACG 100
BSNT_01498___ 101 TACATTTACTCGAAAAATTGGCCCATTTCAACCGAGAACGTGTTCCTGAA 150
|.|||.|.||.||.||||||||.||.||.|||.|||||||.|||||.||.
RBAM_009090__ 101 TCCATCTGCTTGAGAAATTGGCGCACTTTAACAGAGAACGCGTTCCCGAG 150
BSNT_01498___ 151 CGTGTTGTTCACGCCAAAGGAGCAGGCGCACACGGATATTTTGAAGTGAC 200
|||||.||||||||.|||||.||.|||||||||||.|||||||||||.||
RBAM_009090__ 151 CGTGTCGTTCACGCAAAAGGCGCGGGCGCACACGGTTATTTTGAAGTCAC 200
BSNT_01498___ 201 AAACGACGTAACAAAATACACGAAAGCCGCTTTCCTTTCTGAAGTCGGCA 250
|||.|||||.||||||||.|||||||||||.||.||.||.||||||||.|
RBAM_009090__ 201 AAATGACGTTACAAAATATACGAAAGCCGCATTTCTGTCAGAAGTCGGTA 250
BSNT_01498___ 251 AACGCACACCGTTGTTCATCCGTTTCTCAACAGTTGCCGGTGAACTTGGC 300
|||||||.|||.|.|||||||||||||||||.|||||.||.|||||.|||
RBAM_009090__ 251 AACGCACGCCGCTCTTCATCCGTTTCTCAACCGTTGCGGGCGAACTGGGC 300
BSNT_01498___ 301 TCTGCTGACACAGTTCGCGATCCGCGCGGATTTGCTGTTAAATTTTATAC 350
|||..|||||||||.|||||.||||||||||||||.|||||.||||||||
RBAM_009090__ 301 TCTAGTGACACAGTGCGCGACCCGCGCGGATTTGCCGTTAAGTTTTATAC 350
BSNT_01498___ 351 TGAAGAAGGAAACTACGACATCGTCGGCAACAATACGCCTGTATTCTTTA 400
.||||||||||||||||||||||||||.||||||||.||.||.|||||.|
RBAM_009090__ 351 AGAAGAAGGAAACTACGACATCGTCGGAAACAATACACCCGTGTTCTTCA 400
BSNT_01498___ 401 TCCGCGATGCGATTAAGTTCCCTGATTTCATCCATACACAAAAAAGAGAT 450
||||||||||.||.|||||||||||.||.|||||||||||||||||||||
RBAM_009090__ 401 TCCGCGATGCCATCAAGTTCCCTGACTTTATCCATACACAAAAAAGAGAT 450
BSNT_01498___ 451 CCAAAAACACACCTGAAAAACCCTACGGCTGTATGGGATTTCTGGTCACT 500
||.|.||||||.|||||||||||.|||||.||.||||||||||||||.||
RBAM_009090__ 451 CCGAGAACACATCTGAAAAACCCGACGGCCGTTTGGGATTTCTGGTCTCT 500
BSNT_01498___ 501 TTCACCAGAGTCACTGCACCAAGTGACAATCCTGATGTCTGACCGCGGAA 550
.|||||.||.||.||||||||.||.||.||.||||||||.|||||.||.|
RBAM_009090__ 501 GTCACCGGAATCCCTGCACCAGGTCACCATTCTGATGTCAGACCGGGGCA 550
BSNT_01498___ 551 TTCCTGCGACACTTCGCCACATGCACGGCTTCGGAAGCCATACATTCAAA 600
||||.|||||.||||||||.||||||||.|||||||||||||||||.|||
RBAM_009090__ 551 TTCCGGCGACTCTTCGCCATATGCACGGATTCGGAAGCCATACATTTAAA 600
BSNT_01498___ 601 TGGACAAATGCCGAAGGCGAAGGCGTATGGATTAAATATCACTTTAAAAC 650
||||||||||...|||||||||||||.|||||.|||||||||||||||||
RBAM_009090__ 601 TGGACAAATGATAAAGGCGAAGGCGTCTGGATCAAATATCACTTTAAAAC 650
BSNT_01498___ 651 AGAACAAGGCGTGAAAAACCTTGATGTCAATACGGCAGCAAAAATTGCCG 700
|||.|||||||||||||||||||||||.|||||.||.||||||||.||.|
RBAM_009090__ 651 AGAGCAAGGCGTGAAAAACCTTGATGTTAATACAGCCGCAAAAATCGCGG 700
BSNT_01498___ 701 GTGAAAACCCTGATTACCATACAGAAGACCTTTTCAACGCAATCGAAAAC 750
|.|||||.||.|||||||||||.|||||..|.||||||||.||.||||||
RBAM_009090__ 701 GCGAAAATCCCGATTACCATACGGAAGATTTGTTCAACGCGATTGAAAAC 750
BSNT_01498___ 751 GGTGATTATCCTGCATGGAAACTATATGTGCAAATCATGCCTTTAGAAGA 800
||.||||..||.|||||||||.|||||||.|||||||||||.||||||||
RBAM_009090__ 751 GGCGATTTCCCCGCATGGAAATTATATGTTCAAATCATGCCGTTAGAAGA 800
BSNT_01498___ 801 TGCAAATACGTACCGTTTCGATCCGTTTGATGTCACAAAAGTTTGGTCTC 850
.|||||.||.||.||.||.|||||||||||.|||||||||||.|||||||
RBAM_009090__ 801 CGCAAACACATATCGCTTTGATCCGTTTGACGTCACAAAAGTATGGTCTC 850
BSNT_01498___ 851 AAAAAGACTACCCGTTAATCGAGGTCGGACGCATGGTTCTAGACAGAAAT 900
|||||||.||.|||.|.|||||.|||||.|||||||||||..||.|.|||
RBAM_009090__ 851 AAAAAGATTATCCGCTGATCGAAGTCGGCCGCATGGTTCTGAACCGCAAT 900
BSNT_01498___ 901 CCGGAAAACTACTTTGCAGAGGTAGAACAAGCGACATTTTCACCTGGAAC 950
||||||||.||||||||.||.||||||||.|||||.||.||.||.||.||
RBAM_009090__ 901 CCGGAAAATTACTTTGCGGAAGTAGAACAGGCGACGTTCTCTCCCGGCAC 950
BSNT_01498___ 951 CCTCGTGCCTGGTATTGATGTTTCACCGGATAAAATGCTTCAAGGCCGAC 1000
..|.||.||.||..|.||.||.|||||.||.|||||||||||||||||..
RBAM_009090__ 951 ATTAGTCCCCGGCGTCGACGTCTCACCTGACAAAATGCTTCAAGGCCGGT 1000
BSNT_01498___ 1001 TGTTTGCTTATCATGATGCACACCGCTACCGTGTCGGTGCAAACCATCAA 1050
||||.||.||.|||||.||.||.||||||||||||||.||.||||||||.
RBAM_009090__ 1001 TGTTCGCATACCATGACGCGCATCGCTACCGTGTCGGCGCGAACCATCAG 1050
BSNT_01498___ 1051 GCGCTGCCAATCAACCGCGCACGCAACAAAGTAAACAATTATCAGCGTGA 1100
||||||||.||||||||..|.|||||..||||.||.||.|||||||||||
RBAM_009090__ 1051 GCGCTGCCGATCAACCGTTCCCGCAATGAAGTGAAAAACTATCAGCGTGA 1100
BSNT_01498___ 1101 TGGGCAAATGCGTTTTGATGATAACGGCGGCGGATCTGTGTATTACGAGC 1150
.||.|||||||||||||||||||||||||||.|.||.||.||||||||||
RBAM_009090__ 1101 CGGACAAATGCGTTTTGATGATAACGGCGGCCGCTCCGTCTATTACGAGC 1150
BSNT_01498___ 1151 CTAACAGCTTCGGCGGTCCAAAAGAGTCACCTGAGGATAAGCAAGCAGCA 1200
||||||||||||||||.||.||||||||||||||.|||||.||.||.|||
RBAM_009090__ 1151 CTAACAGCTTCGGCGGCCCGAAAGAGTCACCTGAAGATAAACAGGCGGCA 1200
BSNT_01498___ 1201 TATCCGGTACAAGGTATCGCTGACAGCGTAAGCTACGATCACAACGATCA 1250
|||||.|||..||||.||||||||||.||||||||..||||..|.|||||
RBAM_009090__ 1201 TATCCTGTATCAGGTTTCGCTGACAGTGTAAGCTATAATCATCATGATCA 1250
BSNT_01498___ 1251 CTACACTCAAGCCGGTGATCTGTATCGTTTAATGAGTGAAGATGAACGTA 1300
.|||||.||||||||.||.|||||.||..|.|||||.|||||.||.||..
RBAM_009090__ 1251 TTACACACAAGCCGGCGACCTGTACCGCCTGATGAGCGAAGAAGAGCGCG 1300
BSNT_01498___ 1301 CCCGCCTTGTTGAAAATATCGTTAATGCTATGAAGCCGGTAGAAAAAGAA 1350
|.||||||||.|..||||||||.|.|||.|||||.||.||.|||||||||
RBAM_009090__ 1301 CGCGCCTTGTCGCCAATATCGTCAGTGCGATGAAACCTGTGGAAAAAGAA 1350
BSNT_01498___ 1351 GAAATCAAGCTGCGCCAAATCGAGCACTTCTACAAAGCGGATCCTGAATA 1400
|||||.|||||||||||.||||..||||||||||||||.|||||||||||
RBAM_009090__ 1351 GAAATTAAGCTGCGCCAGATCGGCCACTTCTACAAAGCTGATCCTGAATA 1400
BSNT_01498___ 1401 CGGAAAACGCGTGGCAGAAGGCCTTGGATTGCCGATTA--AAAAAGATGC 1448
|||.|.||||||.||.|||||.||.|||.|||| ||.| ||||
RBAM_009090__ 1401 CGGCAGACGCGTTGCCGAAGGACTCGGACTGCC-ATCACCAAAA------ 1443
BSNT_01498___ 1449 TTAA 1452
|||
RBAM_009090__ 1444 -TAA 1446
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