Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01494 and RBAM_009050

See Amino acid alignment / Visit BSNT_01494 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:10
# Commandline: needle
#    -asequence dna-align/BSNT_01494___ygaJ.1.9828.seq
#    -bsequence dna-align/RBAM_009050___ygaJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01494___ygaJ-RBAM_009050___ygaJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01494___ygaJ-RBAM_009050___ygaJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01494___ygaJ
# 2: RBAM_009050___ygaJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 753
# Identity:     510/753 (67.7%)
# Similarity:   510/753 (67.7%)
# Gaps:         111/753 (14.7%)
# Score: 1683.0
# 
#
#=======================================

BSNT_01494___      1 ATGATGAAGCAGATTATTGCGATGGGGGGCGGGGGTTTTTCGATGGAGCC     50
                        .||||||||||||||||.|||||.||||||||.|||||.||||||||
RBAM_009050__      1 ---TTGAAGCAGATTATTGCAATGGGCGGCGGGGGCTTTTCCATGGAGCC     47

BSNT_01494___     51 GGATAAT-TTGTCCCTCGATCAATATATCCTCAATCAATCAAAACGAGAG     99
                     ||||.|| |||| .||.|||||.|||||..|               ||||
RBAM_009050__     48 GGATCATCTTGT-GCTGGATCAGTATATTTT---------------AGAG     81

BSNT_01494___    100 CAGCCTCG-----------------TATTTGTTTTTTGCCGACGGCGAGC    132
                     |||  |||                 .||||||||||||||||||||.|||
RBAM_009050__     82 CAG--TCGGCGCGGTCAAAGCCGAAAATTTGTTTTTTGCCGACGGCAAGC    129

BSNT_01494___    133 GGAGATTCCCAAAACTATATTCAGC-GGTTTTATCATGCATTTCAAACAC    181
                     ||||||||..|.||.|||| ||.|| ||||||||||.||.|||||||..|
RBAM_009050__    130 GGAGATTCGGAGAATTATA-TCGGCAGGTTTTATCAGGCCTTTCAAAAGC    178

BSNT_01494___    182 TGGATTGTGTGCCGTCTCACTTATCTTTGTTTAAGCCGCC--------AT    223
                     ||...||||.||||..||||||.||..|||||||.|||||        ||
RBAM_009050__    179 TGCGGTGTGAGCCGGATCACTTGTCGCTGTTTAAACCGCCGGGTTCTGAT    228

BSNT_01494___    224 CAACAGATTTAACTTCTTTTGTTATG--GAAATGGACGTGATTTATGTTG    271
                     | .||||       ||.|||.|.|||  ||||  ||..|.||.|||||.|
RBAM_009050__    229 C-TCAGA-------TCCTTTCTCATGAAGAAA--GATATTATATATGTCG    268

BSNT_01494___    272 GCGGGGGAAATACGCGGAATTTACTTGTGTTATGGAAAGAGTGGGGGCTT    321
                     ||||.|||||||||||.|||.|.|||||.|||||||||||||||||||||
RBAM_009050__    269 GCGGCGGAAATACGCGCAATATGCTTGTCTTATGGAAAGAGTGGGGGCTT    318

BSNT_01494___    322 GACCAGATTCTTAGGGAAGCATGGAAGAACGGTGTGGTTTTAGCTGGATT    371
                     ||||..||||||.|.||.||.|||.|.|||||..|..|.||.||.||..|
RBAM_009050__    319 GACCTTATTCTTCGTGAGGCTTGGGAAAACGGCATCATGTTGGCGGGTCT    368

BSNT_01494___    372 AAGTGCCGGTGCGATCTGCTGGTTTGAAGAAGGGGTGACGGATTCAGCCG    421
                     .||.|||||.|||||.|||||||.|||||||||..|||||||||||||.|
RBAM_009050__    369 CAGCGCCGGGGCGATTTGCTGGTATGAAGAAGGATTGACGGATTCAGCTG    418

BSNT_01494___    422 GACCGCTGACA-AGTTTGAAAAG-TTTAGGTTTTTTGCAAGGGAGCTTTT    469
                     ||....|||.| ||||  ||.|| ||||||.|||||||..||.|||||||
RBAM_009050__    419 GAGATTTGAGAGAGTT--AAGAGCTTTAGGATTTTTGCCGGGAAGCTTTT    466

BSNT_01494___    470 GTCCCCATTATGACGGGGAAAAGGATCGGAGACCGGCATACCACCAGCTG    519
                     ||||.||.||||||||.|||..|||.||..|.||||..||.||||..|||
RBAM_009050__    467 GTCCGCACTATGACGGAGAAGCGGAGCGCCGGCCGGTGTATCACCGTCTG    516

BSNT_01494___    520 ATATCTAACAAG-TTCTTATGCAGTGGCTATGCAGCGGATGATGGGGCTG    568
                     ||.||..|.||| ..||.|.|.|| ||||||||.||.|||||.||.||||
RBAM_009050__    517 ATTTCAGAAAAGAAACTCAGGGAG-GGCTATGCCGCTGATGACGGCGCTG    565

BSNT_01494___    569 CTCTCCATTTCATAAATGA---TCAGCTGTTTCAGACTGTGAGTTCAAGG    615
                     |.||.||||  ||||| ||   |||||||||.|.|.||||...|||..| 
RBAM_009050__    566 CGCTTCATT--ATAAA-GACGGTCAGCTGTTCCGGGCTGTCTCTTCCCG-    611

BSNT_01494___    616 TCGGAA---GGAAAGGCATATCGGGT----------GATGATGGCTGAAC    652
                       ||||   |.|||||..||||||||          ||..|.||| |..|
RBAM_009050__    612 --GGAAACCGCAAAGGGTTATCGGGTTTTTAATACCGAAAAAGGC-GTTC    658

BSNT_01494___    653 ATGAAATAG-----CTGAAATTCCGTTGCCGGTCAAAT----ATTTAGGG    693
                     ..||||.||     .|||    ||| |.|||.|   ||    ||||    
RBAM_009050__    659 GGGAAACAGAGCTTATGA----CCG-TACCGTT---ATCTGAATTT----    696

BSNT_01494___    694 TGA    696
                     |||
RBAM_009050__    697 TGA    699


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