Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01494 and RBAM_009050
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:10
# Commandline: needle
# -asequence dna-align/BSNT_01494___ygaJ.1.9828.seq
# -bsequence dna-align/RBAM_009050___ygaJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01494___ygaJ-RBAM_009050___ygaJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01494___ygaJ-RBAM_009050___ygaJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01494___ygaJ
# 2: RBAM_009050___ygaJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 753
# Identity: 510/753 (67.7%)
# Similarity: 510/753 (67.7%)
# Gaps: 111/753 (14.7%)
# Score: 1683.0
#
#
#=======================================
BSNT_01494___ 1 ATGATGAAGCAGATTATTGCGATGGGGGGCGGGGGTTTTTCGATGGAGCC 50
.||||||||||||||||.|||||.||||||||.|||||.||||||||
RBAM_009050__ 1 ---TTGAAGCAGATTATTGCAATGGGCGGCGGGGGCTTTTCCATGGAGCC 47
BSNT_01494___ 51 GGATAAT-TTGTCCCTCGATCAATATATCCTCAATCAATCAAAACGAGAG 99
||||.|| |||| .||.|||||.|||||..| ||||
RBAM_009050__ 48 GGATCATCTTGT-GCTGGATCAGTATATTTT---------------AGAG 81
BSNT_01494___ 100 CAGCCTCG-----------------TATTTGTTTTTTGCCGACGGCGAGC 132
||| ||| .||||||||||||||||||||.|||
RBAM_009050__ 82 CAG--TCGGCGCGGTCAAAGCCGAAAATTTGTTTTTTGCCGACGGCAAGC 129
BSNT_01494___ 133 GGAGATTCCCAAAACTATATTCAGC-GGTTTTATCATGCATTTCAAACAC 181
||||||||..|.||.|||| ||.|| ||||||||||.||.|||||||..|
RBAM_009050__ 130 GGAGATTCGGAGAATTATA-TCGGCAGGTTTTATCAGGCCTTTCAAAAGC 178
BSNT_01494___ 182 TGGATTGTGTGCCGTCTCACTTATCTTTGTTTAAGCCGCC--------AT 223
||...||||.||||..||||||.||..|||||||.||||| ||
RBAM_009050__ 179 TGCGGTGTGAGCCGGATCACTTGTCGCTGTTTAAACCGCCGGGTTCTGAT 228
BSNT_01494___ 224 CAACAGATTTAACTTCTTTTGTTATG--GAAATGGACGTGATTTATGTTG 271
| .|||| ||.|||.|.||| |||| ||..|.||.|||||.|
RBAM_009050__ 229 C-TCAGA-------TCCTTTCTCATGAAGAAA--GATATTATATATGTCG 268
BSNT_01494___ 272 GCGGGGGAAATACGCGGAATTTACTTGTGTTATGGAAAGAGTGGGGGCTT 321
||||.|||||||||||.|||.|.|||||.|||||||||||||||||||||
RBAM_009050__ 269 GCGGCGGAAATACGCGCAATATGCTTGTCTTATGGAAAGAGTGGGGGCTT 318
BSNT_01494___ 322 GACCAGATTCTTAGGGAAGCATGGAAGAACGGTGTGGTTTTAGCTGGATT 371
||||..||||||.|.||.||.|||.|.|||||..|..|.||.||.||..|
RBAM_009050__ 319 GACCTTATTCTTCGTGAGGCTTGGGAAAACGGCATCATGTTGGCGGGTCT 368
BSNT_01494___ 372 AAGTGCCGGTGCGATCTGCTGGTTTGAAGAAGGGGTGACGGATTCAGCCG 421
.||.|||||.|||||.|||||||.|||||||||..|||||||||||||.|
RBAM_009050__ 369 CAGCGCCGGGGCGATTTGCTGGTATGAAGAAGGATTGACGGATTCAGCTG 418
BSNT_01494___ 422 GACCGCTGACA-AGTTTGAAAAG-TTTAGGTTTTTTGCAAGGGAGCTTTT 469
||....|||.| |||| ||.|| ||||||.|||||||..||.|||||||
RBAM_009050__ 419 GAGATTTGAGAGAGTT--AAGAGCTTTAGGATTTTTGCCGGGAAGCTTTT 466
BSNT_01494___ 470 GTCCCCATTATGACGGGGAAAAGGATCGGAGACCGGCATACCACCAGCTG 519
||||.||.||||||||.|||..|||.||..|.||||..||.||||..|||
RBAM_009050__ 467 GTCCGCACTATGACGGAGAAGCGGAGCGCCGGCCGGTGTATCACCGTCTG 516
BSNT_01494___ 520 ATATCTAACAAG-TTCTTATGCAGTGGCTATGCAGCGGATGATGGGGCTG 568
||.||..|.||| ..||.|.|.|| ||||||||.||.|||||.||.||||
RBAM_009050__ 517 ATTTCAGAAAAGAAACTCAGGGAG-GGCTATGCCGCTGATGACGGCGCTG 565
BSNT_01494___ 569 CTCTCCATTTCATAAATGA---TCAGCTGTTTCAGACTGTGAGTTCAAGG 615
|.||.|||| ||||| || |||||||||.|.|.||||...|||..|
RBAM_009050__ 566 CGCTTCATT--ATAAA-GACGGTCAGCTGTTCCGGGCTGTCTCTTCCCG- 611
BSNT_01494___ 616 TCGGAA---GGAAAGGCATATCGGGT----------GATGATGGCTGAAC 652
|||| |.|||||..|||||||| ||..|.||| |..|
RBAM_009050__ 612 --GGAAACCGCAAAGGGTTATCGGGTTTTTAATACCGAAAAAGGC-GTTC 658
BSNT_01494___ 653 ATGAAATAG-----CTGAAATTCCGTTGCCGGTCAAAT----ATTTAGGG 693
..||||.|| .||| ||| |.|||.| || ||||
RBAM_009050__ 659 GGGAAACAGAGCTTATGA----CCG-TACCGTT---ATCTGAATTT---- 696
BSNT_01494___ 694 TGA 696
|||
RBAM_009050__ 697 TGA 699
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