Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01444 and RBAM_008800

See Amino acid alignment / Visit BSNT_01444 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:09
# Commandline: needle
#    -asequence dna-align/BSNT_01444___gsaB.1.9828.seq
#    -bsequence dna-align/RBAM_008800___gsaB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01444___gsaB-RBAM_008800___gsaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01444___gsaB-RBAM_008800___gsaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01444___gsaB
# 2: RBAM_008800___gsaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1300
# Identity:    1044/1300 (80.3%)
# Similarity:  1044/1300 (80.3%)
# Gaps:          20/1300 ( 1.5%)
# Score: 4152.0
# 
#
#=======================================

BSNT_01444___      1 TTGCATACAAAATCAATTGAACTTCACAATGAGGCATTACAGCACATTGT     50
                     |||.|||||||||||.||||||||||.||.||.||.|||.||||.||.||
RBAM_008800__      1 TTGTATACAAAATCAGTTGAACTTCATAAGGAAGCGTTAGAGCATATCGT     50

BSNT_01444___     51 CGGCGGTGTAAACAGCCCGTCTAGATCATATAAAGCAGTCGGCGGCGGTT    100
                     |||.||.||.|||||||||||.|||||.||||||||.||.||||||||||
RBAM_008800__     51 CGGAGGCGTGAACAGCCCGTCCAGATCCTATAAAGCGGTAGGCGGCGGTT    100

BSNT_01444___    101 CTCCTGTTGCAATGGAGAAAGCAAGCGGCGCTTATTTTTGGGATGTGGAC    150
                     |.||.|||||.|||||.|||||.|.||||||||||||.||||||||.|||
RBAM_008800__    101 CACCCGTTGCGATGGAAAAAGCGAACGGCGCTTATTTCTGGGATGTAGAC    150

BSNT_01444___    151 GGCAACAAATACATCGATTATTTAGCGGCGTACGGTCCGATTATTACAGG    200
                     ||.||..|.||.|||||||||||||||||.|||||.|||||||||||.||
RBAM_008800__    151 GGGAATCAGTATATCGATTATTTAGCGGCTTACGGCCCGATTATTACCGG    200

BSNT_01444___    201 ACATGCCCACCCGCATATTACAGAAGCGATTAAAAAAGCGGCAGAGAACG    250
                     |||||||||.|||||||||||.|||||||||||||.||||||.||.||||
RBAM_008800__    201 ACATGCCCATCCGCATATTACTGAAGCGATTAAAACAGCGGCTGAAAACG    250

BSNT_01444___    251 GTGTATTGTATGGAACACCAACGAAACACGAGGTTACATTTGCAAAGATG    300
                     |.||..||||.||.||.||.||.|||||.|||||.||.||.||.||.|||
RBAM_008800__    251 GCGTGCTGTACGGGACGCCGACCAAACATGAGGTCACTTTCGCCAAAATG    300

BSNT_01444___    301 CTCAAAGAAGCCATTCCCGCTATGGACAAAGTAAGATTCGTCAATTCGGG    350
                     ||.||.||.||||||||..|..|.||.||||||.|||||||.||.||.||
RBAM_008800__    301 CTGAAGGAGGCCATTCCTTCACTTGATAAAGTACGATTCGTAAACTCAGG    350

BSNT_01444___    351 TACAGAAGCCGTTATGACGACCATCCGCGTGGCTCGCGCATATACAGGCC    400
                     .||.|||||.||.|||||.||.|||||.||.||.|||||.||||||||||
RBAM_008800__    351 CACTGAAGCGGTAATGACAACGATCCGGGTTGCACGCGCTTATACAGGCC    400

BSNT_01444___    401 GGACAAAAATCATTAAATTTGCGGGCTGTTATCACGGGCATTCGGACCTT    450
                     |||||||||||||||||||.||.|||||.||||||||.|||||.||.||.
RBAM_008800__    401 GGACAAAAATCATTAAATTCGCCGGCTGCTATCACGGCCATTCTGATCTC    450

BSNT_01444___    451 GTGCTTGTCGCCGCAGGCTCCGGCCCGTCTACTCTTGGCACACCAGACTC    500
                     ||.||||||||.||.||.|||||.||||||||.||.|||||.||.||.||
RBAM_008800__    451 GTACTTGTCGCTGCGGGTTCCGGTCCGTCTACGCTCGGCACTCCTGATTC    500

BSNT_01444___    501 AGCCGGTGTACCGAAAAGCATTGCAAACGAAGTGATCACAGTACCATTTA    550
                     .|||||.||.|||||||||||.||.||.||.|||||.||.||.||.||.|
RBAM_008800__    501 CGCCGGCGTGCCGAAAAGCATCGCCAATGAGGTGATTACCGTTCCTTTCA    550

BSNT_01444___    551 ATGATATCAATAGCTATAAAGCGGCTCTTGATAAATGGGG--CAGTGAAA    598
                     |||||||..|.|||||.|||||.||.||.|||||||||||  ||  ||||
RBAM_008800__    551 ATGATATTGAAAGCTACAAAGCCGCGCTGGATAAATGGGGTTCA--GAAA    598

BSNT_01444___    599 TCGCGGCGGTTCTCGTTGAACCGATTGTCGGCAACTTCGGTATCGTGGAG    648
                     |.||.|||||||||||.||.|||||.||||||||||||||.|||||.||.
RBAM_008800__    599 TTGCAGCGGTTCTCGTCGAGCCGATCGTCGGCAACTTCGGCATCGTTGAA    648

BSNT_01444___    649 CCGAAAGAGGGCTTCTTAGAAAAAGTAAATGAATTGACACATAATGCAGG    698
                     ||..||||.||.||.||||||.|.||||||||||||||.|||||.||.||
RBAM_008800__    649 CCTGAAGAAGGATTTTTAGAACAGGTAAATGAATTGACCCATAAAGCGGG    698

BSNT_01444___    699 CGCTCTCGTTATTTACGATGAAGTCATTACGGCTTTCCGCTTTATGTATG    748
                     |||.|||||.|||||.||||||||.||.|||||.|||||.||||||||.|
RBAM_008800__    699 CGCGCTCGTCATTTATGATGAAGTGATCACGGCGTTCCGTTTTATGTACG    748

BSNT_01444___    749 GCGGCGCGCAGGATC-TCTTACAGGTGAAACCAGATTTAACAGCACTCGG    797
                     |.||||||||||||| |||| ||.|||||.||.||||||||.||.|||||
RBAM_008800__    749 GAGGCGCGCAGGATCTTCTT-CAAGTGAAGCCTGATTTAACGGCGCTCGG    797

BSNT_01444___    798 GAAAATTATCGGCGGCGGACTT-CCGATTGGCGCCTATGGCGGCAAACAA    846
                     .|||||||||||.||||| ||| |||||.|||||.||.||.||||||.||
RBAM_008800__    798 TAAAATTATCGGGGGCGG-CTTGCCGATCGGCGCTTACGGAGGCAAAAAA    846

BSNT_01444___    847 GAAATCATGGAGCAGGTAGCTCCGCTAGGACCTGCTTATCAGGCAGGAAC    896
                     ||.||||||||||||||.||||||||.||.||.||.|||||.||.||.||
RBAM_008800__    847 GAGATCATGGAGCAGGTTGCTCCGCTCGGCCCGGCATATCAAGCCGGCAC    896

BSNT_01444___    897 AATGGCAGGGAACCCCGCTTCCATCCTATCAGGCATCGCTTGTCTGGAAG    946
                     .|||||.||.|||||.||.||.|||||||||||||||||.||||||||||
RBAM_008800__    897 GATGGCCGGAAACCCGGCATCTATCCTATCAGGCATCGCCTGTCTGGAAG    946

BSNT_01444___    947 TGCTCAAAGAAAAAGGCGTGTATGAAAAGCTTGATCACCTTGGCGCTATG    996
                     ||||.||.|||.|||||||.|||||...|||||||.|.||.|||||.|..
RBAM_008800__    947 TGCTGAAGGAAGAAGGCGTTTATGAGCGGCTTGATGAGCTCGGCGCCAGA    996

BSNT_01444___    997 CTTGAGGAAGGTATTTTGAAGCACGCAGAAACACACGGCATCACCATTAC   1046
                     ||||||.||||.|||.|....||.||.||.|||||||||||.|||||.||
RBAM_008800__    997 CTTGAGCAAGGCATTCTCGCCCATGCGGAGACACACGGCATTACCATCAC   1046

BSNT_01444___   1047 GGTCAACCGGTTAAAAGGTGCGCTCACGGTATATTTCTCTGATGAGAAAG   1096
                     .||||||||.||||||||.|||||||||||.||.|||.||||||| ||||
RBAM_008800__   1047 CGTCAACCGTTTAAAAGGCGCGCTCACGGTTTACTTCACTGATGA-AAAG   1095

BSNT_01444___   1097 -TGGAAAATTACGAGCAGGCTGA----ACGGAGTGACGGAGAAACATTCG   1141
                      |.|..||||||||||||||.||    |||    |||||||||.||||||
RBAM_008800__   1096 ATCGTCAATTACGAGCAGGCGGAAAATACG----GACGGAGAAGCATTCG   1141

BSNT_01444___   1142 CTACGTTTTTTAAGCTGATGCTGGAACGCGGAATTAATTTAGCACCTTCT   1191
                     |.|.|||.||.|||||||||||.||.|||||.||.|||.|.||.||.||.
RBAM_008800__   1142 CCAAGTTCTTCAAGCTGATGCTTGAGCGCGGCATCAATCTCGCTCCATCG   1191

BSNT_01444___   1192 AAGTATGAAGCTTGGTTTATTACCACAGCACATACAGAGCAGGATATTAA   1241
                     ||||||||||||||||||||.||.||.||||||||.||..|||||||..|
RBAM_008800__   1192 AAGTATGAAGCTTGGTTTATCACAACCGCACATACTGAAGAGGATATCGA   1241

BSNT_01444___   1242 AGACACGCTTGC-AGCGGTCGAGGATGCATTTAAACATCTAAAAAACTAG   1290
                     .|.||| .||.| |||.||.||.|||||.||.|.||||.|.|||||.||.
RBAM_008800__   1242 CGCCAC-TTTACAAGCCGTTGAAGATGCGTTCAGACATATGAAAAAATAA   1290


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