Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01444 and RBAM_008800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:09
# Commandline: needle
# -asequence dna-align/BSNT_01444___gsaB.1.9828.seq
# -bsequence dna-align/RBAM_008800___gsaB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01444___gsaB-RBAM_008800___gsaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01444___gsaB-RBAM_008800___gsaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01444___gsaB
# 2: RBAM_008800___gsaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1300
# Identity: 1044/1300 (80.3%)
# Similarity: 1044/1300 (80.3%)
# Gaps: 20/1300 ( 1.5%)
# Score: 4152.0
#
#
#=======================================
BSNT_01444___ 1 TTGCATACAAAATCAATTGAACTTCACAATGAGGCATTACAGCACATTGT 50
|||.|||||||||||.||||||||||.||.||.||.|||.||||.||.||
RBAM_008800__ 1 TTGTATACAAAATCAGTTGAACTTCATAAGGAAGCGTTAGAGCATATCGT 50
BSNT_01444___ 51 CGGCGGTGTAAACAGCCCGTCTAGATCATATAAAGCAGTCGGCGGCGGTT 100
|||.||.||.|||||||||||.|||||.||||||||.||.||||||||||
RBAM_008800__ 51 CGGAGGCGTGAACAGCCCGTCCAGATCCTATAAAGCGGTAGGCGGCGGTT 100
BSNT_01444___ 101 CTCCTGTTGCAATGGAGAAAGCAAGCGGCGCTTATTTTTGGGATGTGGAC 150
|.||.|||||.|||||.|||||.|.||||||||||||.||||||||.|||
RBAM_008800__ 101 CACCCGTTGCGATGGAAAAAGCGAACGGCGCTTATTTCTGGGATGTAGAC 150
BSNT_01444___ 151 GGCAACAAATACATCGATTATTTAGCGGCGTACGGTCCGATTATTACAGG 200
||.||..|.||.|||||||||||||||||.|||||.|||||||||||.||
RBAM_008800__ 151 GGGAATCAGTATATCGATTATTTAGCGGCTTACGGCCCGATTATTACCGG 200
BSNT_01444___ 201 ACATGCCCACCCGCATATTACAGAAGCGATTAAAAAAGCGGCAGAGAACG 250
|||||||||.|||||||||||.|||||||||||||.||||||.||.||||
RBAM_008800__ 201 ACATGCCCATCCGCATATTACTGAAGCGATTAAAACAGCGGCTGAAAACG 250
BSNT_01444___ 251 GTGTATTGTATGGAACACCAACGAAACACGAGGTTACATTTGCAAAGATG 300
|.||..||||.||.||.||.||.|||||.|||||.||.||.||.||.|||
RBAM_008800__ 251 GCGTGCTGTACGGGACGCCGACCAAACATGAGGTCACTTTCGCCAAAATG 300
BSNT_01444___ 301 CTCAAAGAAGCCATTCCCGCTATGGACAAAGTAAGATTCGTCAATTCGGG 350
||.||.||.||||||||..|..|.||.||||||.|||||||.||.||.||
RBAM_008800__ 301 CTGAAGGAGGCCATTCCTTCACTTGATAAAGTACGATTCGTAAACTCAGG 350
BSNT_01444___ 351 TACAGAAGCCGTTATGACGACCATCCGCGTGGCTCGCGCATATACAGGCC 400
.||.|||||.||.|||||.||.|||||.||.||.|||||.||||||||||
RBAM_008800__ 351 CACTGAAGCGGTAATGACAACGATCCGGGTTGCACGCGCTTATACAGGCC 400
BSNT_01444___ 401 GGACAAAAATCATTAAATTTGCGGGCTGTTATCACGGGCATTCGGACCTT 450
|||||||||||||||||||.||.|||||.||||||||.|||||.||.||.
RBAM_008800__ 401 GGACAAAAATCATTAAATTCGCCGGCTGCTATCACGGCCATTCTGATCTC 450
BSNT_01444___ 451 GTGCTTGTCGCCGCAGGCTCCGGCCCGTCTACTCTTGGCACACCAGACTC 500
||.||||||||.||.||.|||||.||||||||.||.|||||.||.||.||
RBAM_008800__ 451 GTACTTGTCGCTGCGGGTTCCGGTCCGTCTACGCTCGGCACTCCTGATTC 500
BSNT_01444___ 501 AGCCGGTGTACCGAAAAGCATTGCAAACGAAGTGATCACAGTACCATTTA 550
.|||||.||.|||||||||||.||.||.||.|||||.||.||.||.||.|
RBAM_008800__ 501 CGCCGGCGTGCCGAAAAGCATCGCCAATGAGGTGATTACCGTTCCTTTCA 550
BSNT_01444___ 551 ATGATATCAATAGCTATAAAGCGGCTCTTGATAAATGGGG--CAGTGAAA 598
|||||||..|.|||||.|||||.||.||.||||||||||| || ||||
RBAM_008800__ 551 ATGATATTGAAAGCTACAAAGCCGCGCTGGATAAATGGGGTTCA--GAAA 598
BSNT_01444___ 599 TCGCGGCGGTTCTCGTTGAACCGATTGTCGGCAACTTCGGTATCGTGGAG 648
|.||.|||||||||||.||.|||||.||||||||||||||.|||||.||.
RBAM_008800__ 599 TTGCAGCGGTTCTCGTCGAGCCGATCGTCGGCAACTTCGGCATCGTTGAA 648
BSNT_01444___ 649 CCGAAAGAGGGCTTCTTAGAAAAAGTAAATGAATTGACACATAATGCAGG 698
||..||||.||.||.||||||.|.||||||||||||||.|||||.||.||
RBAM_008800__ 649 CCTGAAGAAGGATTTTTAGAACAGGTAAATGAATTGACCCATAAAGCGGG 698
BSNT_01444___ 699 CGCTCTCGTTATTTACGATGAAGTCATTACGGCTTTCCGCTTTATGTATG 748
|||.|||||.|||||.||||||||.||.|||||.|||||.||||||||.|
RBAM_008800__ 699 CGCGCTCGTCATTTATGATGAAGTGATCACGGCGTTCCGTTTTATGTACG 748
BSNT_01444___ 749 GCGGCGCGCAGGATC-TCTTACAGGTGAAACCAGATTTAACAGCACTCGG 797
|.||||||||||||| |||| ||.|||||.||.||||||||.||.|||||
RBAM_008800__ 749 GAGGCGCGCAGGATCTTCTT-CAAGTGAAGCCTGATTTAACGGCGCTCGG 797
BSNT_01444___ 798 GAAAATTATCGGCGGCGGACTT-CCGATTGGCGCCTATGGCGGCAAACAA 846
.|||||||||||.||||| ||| |||||.|||||.||.||.||||||.||
RBAM_008800__ 798 TAAAATTATCGGGGGCGG-CTTGCCGATCGGCGCTTACGGAGGCAAAAAA 846
BSNT_01444___ 847 GAAATCATGGAGCAGGTAGCTCCGCTAGGACCTGCTTATCAGGCAGGAAC 896
||.||||||||||||||.||||||||.||.||.||.|||||.||.||.||
RBAM_008800__ 847 GAGATCATGGAGCAGGTTGCTCCGCTCGGCCCGGCATATCAAGCCGGCAC 896
BSNT_01444___ 897 AATGGCAGGGAACCCCGCTTCCATCCTATCAGGCATCGCTTGTCTGGAAG 946
.|||||.||.|||||.||.||.|||||||||||||||||.||||||||||
RBAM_008800__ 897 GATGGCCGGAAACCCGGCATCTATCCTATCAGGCATCGCCTGTCTGGAAG 946
BSNT_01444___ 947 TGCTCAAAGAAAAAGGCGTGTATGAAAAGCTTGATCACCTTGGCGCTATG 996
||||.||.|||.|||||||.|||||...|||||||.|.||.|||||.|..
RBAM_008800__ 947 TGCTGAAGGAAGAAGGCGTTTATGAGCGGCTTGATGAGCTCGGCGCCAGA 996
BSNT_01444___ 997 CTTGAGGAAGGTATTTTGAAGCACGCAGAAACACACGGCATCACCATTAC 1046
||||||.||||.|||.|....||.||.||.|||||||||||.|||||.||
RBAM_008800__ 997 CTTGAGCAAGGCATTCTCGCCCATGCGGAGACACACGGCATTACCATCAC 1046
BSNT_01444___ 1047 GGTCAACCGGTTAAAAGGTGCGCTCACGGTATATTTCTCTGATGAGAAAG 1096
.||||||||.||||||||.|||||||||||.||.|||.||||||| ||||
RBAM_008800__ 1047 CGTCAACCGTTTAAAAGGCGCGCTCACGGTTTACTTCACTGATGA-AAAG 1095
BSNT_01444___ 1097 -TGGAAAATTACGAGCAGGCTGA----ACGGAGTGACGGAGAAACATTCG 1141
|.|..||||||||||||||.|| ||| |||||||||.||||||
RBAM_008800__ 1096 ATCGTCAATTACGAGCAGGCGGAAAATACG----GACGGAGAAGCATTCG 1141
BSNT_01444___ 1142 CTACGTTTTTTAAGCTGATGCTGGAACGCGGAATTAATTTAGCACCTTCT 1191
|.|.|||.||.|||||||||||.||.|||||.||.|||.|.||.||.||.
RBAM_008800__ 1142 CCAAGTTCTTCAAGCTGATGCTTGAGCGCGGCATCAATCTCGCTCCATCG 1191
BSNT_01444___ 1192 AAGTATGAAGCTTGGTTTATTACCACAGCACATACAGAGCAGGATATTAA 1241
||||||||||||||||||||.||.||.||||||||.||..|||||||..|
RBAM_008800__ 1192 AAGTATGAAGCTTGGTTTATCACAACCGCACATACTGAAGAGGATATCGA 1241
BSNT_01444___ 1242 AGACACGCTTGC-AGCGGTCGAGGATGCATTTAAACATCTAAAAAACTAG 1290
.|.||| .||.| |||.||.||.|||||.||.|.||||.|.|||||.||.
RBAM_008800__ 1242 CGCCAC-TTTACAAGCCGTTGAAGATGCGTTCAGACATATGAAAAAATAA 1290
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