Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01435 and RBAM_008730
See
Amino acid alignment /
Visit
BSNT_01435 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:09
# Commandline: needle
# -asequence dna-align/BSNT_01435___yfhS.1.9828.seq
# -bsequence dna-align/RBAM_008730___yfhS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01435___yfhS-RBAM_008730___yfhS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01435___yfhS-RBAM_008730___yfhS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01435___yfhS
# 2: RBAM_008730___yfhS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 227
# Identity: 189/227 (83.3%)
# Similarity: 189/227 (83.3%)
# Gaps: 4/227 ( 1.8%)
# Score: 778.5
#
#
#=======================================
BSNT_01435___ 1 ATGTATGTCGGACGTGATATGAGCGAATTGAACATGGTTTCCAAAAAAGA 50
|||||||||||||||||||||.||||||||..||||.|..||||||||||
RBAM_008730__ 1 ATGTATGTCGGACGTGATATGGGCGAATTGGCCATGATGCCCAAAAAAGA 50
BSNT_01435___ 51 TTGGA-AGA-ACAGTGAACTCGCTTATTTTCATCATGCCTTTCAGCAAAT 98
||||| ||| .|| ||.|||||.|||||.|||||||||||.||||||||
RBAM_008730__ 51 TTGGAGAGATTCA--GAGCTCGCCTATTTCCATCATGCCTTCCAGCAAAT 98
BSNT_01435___ 99 TATGCCTTATTTGAACGAAGAAGGCCAATCAAAATACCGGGAATTAACGC 148
||||||.|||||.||||||||||||||.||.||||||||||||.|.|..|
RBAM_008730__ 99 TATGCCGTATTTAAACGAAGAAGGCCAGTCCAAATACCGGGAACTGATCC 148
BSNT_01435___ 149 AAGAAATTGAAGCGCGCGGCGGAATGAAGCGCAATGAAGCGGACTACAGC 198
|.|||||.|||||.|||||||||.||||.||.|||||||||||.|||.||
RBAM_008730__ 149 AGGAAATCGAAGCCCGCGGCGGACTGAAACGGAATGAAGCGGATTACGGC 198
BSNT_01435___ 199 CACGGCACGCGCGTCTCTTACGATTAA 225
||||||||.||||||...||.||.|.|
RBAM_008730__ 199 CACGGCACTCGCGTCAGCTATGACTGA 225
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.