Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01434 and RBAM_008720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_01434___yfhQ.1.9828.seq
# -bsequence dna-align/RBAM_008720___yfhQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01434___yfhQ-RBAM_008720___yfhQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01434___yfhQ-RBAM_008720___yfhQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01434___yfhQ
# 2: RBAM_008720___yfhQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1122
# Identity: 862/1122 (76.8%)
# Similarity: 862/1122 (76.8%)
# Gaps: 36/1122 ( 3.2%)
# Score: 3301.0
#
#
#=======================================
BSNT_01434___ 1 ATGAACGTACTTGAAGACAAATTAAAACAAAAAGACATACAGCAATTTCG 50
|||||||.|||||||||.|||.|.|||||||||||.|||.|..|||||||
RBAM_008720__ 1 ATGAACGCACTTGAAGAAAAAATGAAACAAAAAGATATAGACAAATTTCG 50
BSNT_01434___ 51 CGATGATTTAATCTCATGGTTTGAACGAGAGCAGCGCGTTTTGCCGTGGA 100
|||.||.|||||..|||||||.|||.||||.|||.|..||.|||||||||
RBAM_008720__ 51 CGAGGACTTAATTACATGGTTCGAAAGAGAACAGAGAATTCTGCCGTGGA 100
BSNT_01434___ 101 GAGAGGACCAAGATCCATATAAGGTGTGGGTATCTGAAGTGATGCTGCAG 150
||||..|.||.||.||.|||..|||||||||.||.||.||||||||||||
RBAM_008720__ 101 GAGAAAATCAGGACCCGTATCGGGTGTGGGTGTCAGAGGTGATGCTGCAG 150
BSNT_01434___ 151 CAAACGAGAGTAGAGACAGTGATTCCTTACTTTCTCCGGTTTGTGGAACA 200
||.|||.|.|||||.||.||.||.|||||.||.|..||||||||.||.||
RBAM_008720__ 151 CAGACGCGCGTAGAAACCGTTATCCCTTATTTCCGGCGGTTTGTTGAGCA 200
BSNT_01434___ 201 ATTCCCGACAGTGGAAGCGCTCGCTGATGCTGATGAAGAAAAGGTGCTGA 250
|||.|||||.||....|||||||||||.||.|||||.|||||.|||||.|
RBAM_008720__ 201 ATTTCCGACCGTTTCGGCGCTCGCTGAAGCCGATGAGGAAAAAGTGCTCA 250
BSNT_01434___ 251 AAGCATGGGAAGGGCTCGGCTATTATTCGCGAGTCAGAAACCTGCAAAGC 300
||||.|||||||||||.||.|||||.||.||.||.|||||.|||||||||
RBAM_008720__ 251 AAGCCTGGGAAGGGCTAGGTTATTACTCCCGTGTAAGAAATCTGCAAAGC 300
BSNT_01434___ 301 GCGGTAAAAGAAGTGAAACAGGAATACGGCGGCATTGTTCCTCCAGACGA 350
||.||||||||||||.|..||...|||||.||..|.||.|||.|.||.||
RBAM_008720__ 301 GCCGTAAAAGAAGTGCATGAGCGGTACGGGGGAGTCGTCCCTGCCGAGGA 350
BSNT_01434___ 351 GAAAGATTTTGGCGGGTTAAAAGGCGTCGGCCCTTATACAAAGGGAGCGG 400
.||.||.||||||||..|.|||||.|||||||||||||||||.||.||.|
RBAM_008720__ 351 AAAGGAATTTGGCGGACTGAAAGGTGTCGGCCCTTATACAAAAGGCGCCG 400
BSNT_01434___ 401 TGCTCAGCATTGCCTACAATAAACCCATTCCCGCGGTTGACGGAAATGTG 450
||||||||||.||.|||||.|||||.||||||||.||.|||||.||||||
RBAM_008720__ 401 TGCTCAGCATCGCATACAACAAACCGATTCCCGCCGTAGACGGCAATGTG 450
BSNT_01434___ 451 ATGCGTGTCATGTCCAGGATTCTATCTATTTGGGATGATATTGCCAAACC 500
||||||||||||||.||.|||||.||.||.|||||.|||||.||.|||||
RBAM_008720__ 451 ATGCGTGTCATGTCGAGAATTCTTTCCATATGGGACGATATCGCAAAACC 500
BSNT_01434___ 501 AAAAACAAGAACGATCTTTGAAGACGCCATACGAGCTTTTATTTCCAAAG 550
.|||||.|||||.||.||.|||.|.||..||...|||||.|||||..|.|
RBAM_008720__ 501 TAAAACCAGAACCATTTTCGAACAGGCGGTATCCGCTTTCATTTCTCATG 550
BSNT_01434___ 551 AAAAACCATCTGAATTTAATCAGGGCTTGATGGAGCTTGGAGCCTTGATC 600
||||||||||||||||.||||||||.||.||||||||.||.||..|.|||
RBAM_008720__ 551 AAAAACCATCTGAATTCAATCAGGGTTTAATGGAGCTCGGCGCGATCATC 600
BSNT_01434___ 601 TGTACGCCAAAATCACCCTCATGCCTGCTTTGCCCGGTTCAGCAGCATTG 650
||.||.||.|||||.||.||.||||||||||||||.||.||..||||.||
RBAM_008720__ 601 TGCACCCCGAAATCGCCGTCCTGCCTGCTTTGCCCCGTACAAAAGCACTG 650
BSNT_01434___ 651 CTCAGCATTTGAAGAAGGCACTGAACGGGAGCTTCCGGTAAAAAGCAAAA 700
|||.|||||||..|||||.||.||.||||||||.||.||.||||||||||
RBAM_008720__ 651 CTCGGCATTTGCGGAAGGGACAGAGCGGGAGCTGCCCGTTAAAAGCAAAA 700
BSNT_01434___ 701 AGAAAAAGCCCGGGATCAAAACCATGGCCGCGATCGTACTGACTGATGAA 750
|||||||||||||.||.|||||.|||||.||..|.||.|||||.||.||.
RBAM_008720__ 701 AGAAAAAGCCCGGAATAAAAACAATGGCAGCCGTTGTGCTGACAGACGAT 750
BSNT_01434___ 751 GACGGACAAGTGTATATCCACAAACGGCCGTCTAAAGGTTTGCTCGCCAA 800
.|.||..|.||.|||||.||.|||||||||.|.|||||.|||||||||||
RBAM_008720__ 751 CAAGGCGATGTCTATATTCATAAACGGCCGCCAAAAGGCTTGCTCGCCAA 800
BSNT_01434___ 801 CCTGTGGGAATTTCCGAATCTTGAAACACAAAAAGGGATCAAAACTGAGC 850
|.|||||||.|||||||||...|||||.||.|||||.||||||||.||..
RBAM_008720__ 801 CTTGTGGGAGTTTCCGAATACCGAAACCCAGAAAGGAATCAAAACCGAAA 850
BSNT_01434___ 851 GTGAACAGCTCATTG----CTTTCTTAGAAAACGAATATGGCATACAA-- 894
|.||.|||| ||| ||.| ||||||||.| |.||||.| ||||
RBAM_008720__ 851 GAGAGCAGC---TTGAAGCCTAT-TTAGAAAAAG-AGATGGGA-ACAACC 894
BSNT_01434___ 895 GCTGATATCAGTGATCTGCAAGGTGTAGTCGAGCATGTTTTCACCCACCT 944
|||||.|||.|.||.|||.||||..|.||.||.||||||||||||||.||
RBAM_008720__ 895 GCTGAAATCGGGGAGCTGGAAGGCATCGTAGAACATGTTTTCACCCATCT 944
BSNT_01434___ 945 GGTATGGAATATTTCAGTGTTTTTCGGTAAAGTAAAACAAGTGTCGGATA 994
.||.|||||||||||.||.|||||||||||||||||||||||||||||||
RBAM_008720__ 945 CGTCTGGAATATTTCGGTCTTTTTCGGTAAAGTAAAACAAGTGTCGGATA 994
BSNT_01434___ 995 CCAGCAAGCTGAA-----AAAAGTAACGAAAGAAGAGCTCGAACAATTTG 1039
| |.|.||| |...||.||.|||||.||||||||..|||..|
RBAM_008720__ 995 C-----AACGGAATTCATACGGGTCACAAAAGAGGAGCTCGAGGAATACG 1039
BSNT_01434___ 1040 CGTTCCCGGTATCACATCAAAAAATCTGGAAGATGGCAGTAG-AAGCAGC 1088
|.||.||.||.||.||||||||.||.|||||.|||||.|.|| ||||.||
RBAM_008720__ 1040 CATTTCCCGTTTCCCATCAAAAGATATGGAAAATGGCGGAAGAAAGCGGC 1089
BSNT_01434___ 1089 CGCCATCTCGGCTGCTCCGTAA 1110
||| |.||||
RBAM_008720__ 1090 CGC-------------CTGTAA 1098
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