Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01430 and RBAM_008690
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_01430___csbB.1.9828.seq
# -bsequence dna-align/RBAM_008690___csbB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01430___csbB-RBAM_008690___csbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01430___csbB-RBAM_008690___csbB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01430___csbB
# 2: RBAM_008690___csbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1007
# Identity: 765/1007 (76.0%)
# Similarity: 765/1007 (76.0%)
# Gaps: 43/1007 ( 4.3%)
# Score: 2912.5
#
#
#=======================================
BSNT_01430___ 1 ATGAAGCAAGGATTAATCTCGATTATTATCCCGTCTTACAATGAAGGGTA 50
|||||.|||.|.||||||||.||||||||.||||||||.|||||||||.|
RBAM_008690__ 1 ATGAAACAAAGGTTAATCTCAATTATTATTCCGTCTTATAATGAAGGGAA 50
BSNT_01430___ 51 TAATGTCAAACTCATTCATGAATCTTTAAAAAAGGAATTTAAAAACATTC 100
.||.|||||.|||||.|||||||||||||||||.||.|||.|.|..||||
RBAM_008690__ 51 CAACGTCAAGCTCATCCATGAATCTTTAAAAAAAGAGTTTCAGACGATTC 100
BSNT_01430___ 101 ATTATGACTATGAAATATTCTTCATAAACGACGGAAGTGTTGATGACACG 150
||||||||||||||||.||||.|||.||.||||||||.|..||||||||.
RBAM_008690__ 101 ATTATGACTATGAAATTTTCTACATCAATGACGGAAGCGCGGATGACACC 150
BSNT_01430___ 151 CTTCAGCAGATCAAAGACTTGGCAGCGACGTGCAG------CCGGGTAAA 194
|||||||||||.|||||..||||.|| ||| .||.||.||
RBAM_008690__ 151 CTTCAGCAGATTAAAGAACTGGCCGC------CAGAAACCATCGCGTCAA 194
BSNT_01430___ 195 ATATATATCTTTTTCTCGAAACTTTGGAAAAGAAGCCGCAATTTTGGCGG 244
|||.|||||||||||.||.|||||.|||||||||||.||.||||||||.|
RBAM_008690__ 195 ATACATATCTTTTTCCCGCAACTTCGGAAAAGAAGCGGCCATTTTGGCAG 244
BSNT_01430___ 245 GCTTTGAGCATGTTCAGGGCGAGGCGGTTATTGTAATGGATGCCGATCTG 294
|.|||||.||.||.||||||||.|||||.||.||.|||||.|||||||||
RBAM_008690__ 245 GATTTGAACACGTGCAGGGCGAAGCGGTAATCGTGATGGACGCCGATCTG 294
BSNT_01430___ 295 CAGCATCCGACATATTTGCTGAAGGAATTTATCAAAGGCTACGAAGAAGG 344
|||||||||||..||.|||||||.||.||.||..|||||||.||||||||
RBAM_008690__ 295 CAGCATCCGACCCATCTGCTGAAAGACTTCATTCAAGGCTATGAAGAAGG 344
BSNT_01430___ 345 GTATGACCAAGTCATTGCCCAAAGGAACAGAAAAGGGGACAGCTTTGTCC 394
|||||||||||||||.||.||..|.|||.||||||||||||||...||.|
RBAM_008690__ 345 GTATGACCAAGTCATCGCGCAGCGCAACCGAAAAGGGGACAGCCCCGTGC 394
BSNT_01430___ 395 GCTCACT-CTTATCATCTATGTACTACAAGTTCATTAATAAAGCGGTGGA 443
|.||..| ||| ||.||..||||.||.||.||.||.||.|||||.||.||
RBAM_008690__ 395 GTTCCGTGCTT-TCTTCCCTGTATTATAAATTTATCAACAAAGCCGTCGA 443
BSNT_01430___ 444 AGTCGATTTGCGTGACGGTGTCGGTGACTTCAGATTGTTAAGCCGCCAAG 493
|||.||..||||||||||.|||||.||.|||.|..||.|.|||||.||.|
RBAM_008690__ 444 AGTGGACCTGCGTGACGGGGTCGGAGATTTCCGCCTGCTGAGCCGGCAGG 493
BSNT_01430___ 494 CTGTGAATGCACTTTTGAAGCTGAGCGAAGGAAACCGCTTCTCAAAAGGC 543
|.||..||||.||||||||||||||.|||||.|||||.|||||.|||||.
RBAM_008690__ 494 CCGTTGATGCCCTTTTGAAGCTGAGTGAAGGGAACCGTTTCTCGAAAGGG 543
BSNT_01430___ 544 CTTTTTTGCTGGATTGGCTTTGATCAGAAAATTGTATTTTATGAAAATGT 593
||.||.||||||||.||.|||||.||||||||.|||||||||||||||||
RBAM_008690__ 544 CTGTTCTGCTGGATCGGTTTTGACCAGAAAATCGTATTTTATGAAAATGT 593
BSNT_01430___ 594 CGAACGAAAAAACGGCACCTCCAAATGGTCGTTCAGCAGTCTGTTTAATT 643
||||.|.||.||||||||.|||||||||||.|||||||.||||||.||.|
RBAM_008690__ 594 CGAAAGGAAGAACGGCACGTCCAAATGGTCATTCAGCAATCTGTTCAACT 643
BSNT_01430___ 644 ACGGCATGGACGGCGTCGTTTCATTTAATCATAAGCCGCTGAGATTATGT 693
||||.||||||||.|||||.||.||.||..|.|||||.||.||..||||.
RBAM_008690__ 644 ACGGAATGGACGGTGTCGTCTCCTTCAACAACAAGCCCCTTAGGGTATGC 693
BSNT_01430___ 694 TTTTATACAGGCATTTTCATCCTGCTGCTTTCCATCATTTATATCATTGC 743
||||..||.||.|||.|.||..||||.||.||.||..|||||||..|..|
RBAM_008690__ 694 TTTTTCACCGGTATTCTGATATTGCTTCTGTCGATGGTTTATATTGTAAC 743
BSNT_01430___ 744 CACATTCGTTAAAATTCTGACTAACGGTATTTCTGTGCCTGGGTATTTCA 793
.||.||.|||.|.||||||||..||||..|.||.||.||.||.||.||||
RBAM_008690__ 744 GACCTTTGTTCATATTCTGACACACGGCGTGTCCGTACCCGGATACTTCA 793
BSNT_01430___ 794 CCATTATCTCAGCAGTGTTATTTCTCGGCGGAGTACAGCTGTTAAGCCTT 843
|||||||.||.||.|||.|.|||.|.||.||..|.|||||.||.||.||.
RBAM_008690__ 794 CCATTATTTCCGCCGTGCTGTTTTTAGGGGGCATCCAGCTTTTGAGTCTC 843
BSNT_01430___ 844 GGAATTATAGGTGAATATATCGGCCGAATCTATTATGAAACAAAAAAACG 893
||.||.||.||.|||||.||||||||.||.||.|||||||||||||||||
RBAM_008690__ 844 GGCATCATCGGAGAATACATCGGCCGGATTTACTATGAAACAAAAAAACG 893
BSNT_01430___ 894 CCCGCATTATTTGATCAAAGAAGCGAATATCCCGAACAAAGACCTGCCTG 943
||||||.|||||.||.||||||||||||||..||.||..|||.| .
RBAM_008690__ 894 CCCGCACTATTTAATTAAAGAAGCGAATATAACGTACGGAGAAC-----A 938
BSNT_01430___ 944 AAACG-AACGAATT-----AAAAAGCATGCGGCGTCTGACAAAAATG--- 984
|||.| |||||||| ||||||| || ||.||
RBAM_008690__ 939 AAATGAAACGAATTATACAAAAAAGC-----GC---------AAGTGGAA 974
BSNT_01430___ 985 -CACTGA 990
||.|.|
RBAM_008690__ 975 CCATTAA 981
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