Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01402 and RBAM_008530
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_01402.1.9828.seq
# -bsequence dna-align/RBAM_008530___yfiX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01402-RBAM_008530___yfiX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01402-RBAM_008530___yfiX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01402
# 2: RBAM_008530___yfiX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2626
# Identity: 1897/2626 (72.2%)
# Similarity: 1897/2626 (72.2%)
# Gaps: 110/2626 ( 4.2%)
# Score: 6574.0
#
#
#=======================================
BSNT_01402 1 TTGCTGATTAAAAAGAATGCTTTATCAATATTAAAAATCGTTTTTCCTAT 50
|||||||.||||||||||||.|||||.|||||||||.|..|.||||||||
RBAM_008530__ 1 TTGCTGACTAAAAAGAATGCCTTATCGATATTAAAAGTATTATTTCCTAT 50
BSNT_01402 51 TGCTGTTTTGCTATTTGTTATTTATCAATCGAAAAAAGAACTGACAAATC 100
|||.||||||||.||.||.||||||||.||.|||||.|||.|||||.|.|
RBAM_008530__ 51 TGCAGTTTTGCTTTTAGTCATTTATCAGTCCAAAAAGGAATTGACAGACC 100
BSNT_01402 101 TGTCATTCAAACGTACGCT---CATGGTCATCAACGGACTGGAACG-AAC 146
|.||.||.|||||.||||| || |.||.|||||..|.||.|| .||
RBAM_008530__ 101 TTTCTTTTAAACGAACGCTGTACA---TTATTAACGGGATTGAGCGTTAC 147
BSNT_01402 147 TGACTTATTTATGCTTGTGTTGATCGGCTTGCTGGCTGT-TGCGGCCATG 195
||.||||||||.||.||..||.|||||.|.||.||.|| .|| ||.|||
RBAM_008530__ 148 -GATTTATTTATTCTCGTTCTGCTCGGCCTTCTTGCCGTCAGC-GCAATG 195
BSNT_01402 196 TCGCTGTATGATTACGTCCTGAAATACTCACTTCGCCT-ATCGATCACAA 244
||..|.|||||.|..||.||||||....|.|||||||| |.| ||..|.|
RBAM_008530__ 196 TCCTTTTATGACTTTGTGCTGAAACGGACGCTTCGCCTCAAC-ATTCCGA 244
BSNT_01402 245 ACGGAAAAGTATTCAGGGTTTCCTGGATCGCCAATTCATTTAATAATGTG 294
|..|.||||||||||||||.||||..|||||||||||.|||||.|||||.
RBAM_008530__ 245 ATTGGAAAGTATTCAGGGTCTCCTTTATCGCCAATTCCTTTAACAATGTC 294
BSNT_01402 295 CTGGGCTTCGGCGGTTTAGCCGGCGTCGGGTTAAGAATGATGTTATATAA 344
||.||.|||||||||.|.||.||.||||||.|..|.|.||||.||||.||
RBAM_008530__ 295 CTTGGATTCGGCGGTCTGGCGGGTGTCGGGCTGCGGACGATGCTATACAA 344
BSNT_01402 345 GGAGCATACGAAAGAC-CATAAGGCACTCGTGAAAGGAATCGCCTGGCTC 393
.||.||||||||.||| .|.||.|| |||||...|||.|||||||||||.
RBAM_008530__ 345 AGAACATACGAATGACGTAAAACGC-CTCGTCGCAGGCATCGCCTGGCTT 393
BSNT_01402 394 ACATCATCTATGCTGCTCGGATTATCTGTTTTCAGCATTTT---CGTCGC 440
||.||.||...|||||||||..|.||.||.|||||.||..| |.||
RBAM_008530__ 394 ACGTCCTCAGCGCTGCTCGGGCTGTCCGTCTTCAGTATCCTGACCATC-- 441
BSNT_01402 441 TGCGAGAGTGCTGCCAGTGGATGAAGTGATT-CA--TGAAAAGCCTTGGC 487
||..|.||.||||| ||.||.||.|||| || |||.||.||.||||
RBAM_008530__ 442 -GCCCGGGTTCTGCC---GGTTGGAGAGATTACAGGTGAGAAACCGTGGC 487
BSNT_01402 488 TATGGGCGGTCGTTAT---CGGTTTTGCGCTGATATTGCC-GCTGTCTT- 532
|.||||| .||||| |||..|.|||||.||..|||| ||.|.|||
RBAM_008530__ 488 TGTGGGC---TGTTATCGCCGGAGTGGCGCTTATTGTGCCGGCAGCCTTA 534
BSNT_01402 533 -TGGC----GGTGTCCAAAATAAAAGACCGCAAAGCTGGGGACGAAGAGA 577
|.|| ||..||.|.|||||| ||||||||.|..|||||
RBAM_008530__ 535 ATCGCCGCTGGGATCAACAATAAA-------AAAGCTGGCGCAGAAGA-- 575
BSNT_01402 578 ATGCGGACAAAGTGAAAA--------ATCCGATTTTCGCATATATTGGAG 619
|||..|| |.||| |||||.||||..|.||.||.||.|
RBAM_008530__ 576 ---CGGTGAA---GCAAAACCGAGGCATCCGGTTTTTTCTTACATCGGGG 619
BSNT_01402 620 CTTCAGTTGTTGAATGGCTCATGGCCGGGATCGTCATCTATTTTGCTTTG 669
|.||..|||.|||||||.|...|||.|...|||||||.||||.|.|.|||
RBAM_008530__ 620 CATCGTTTGCTGAATGGTTTGCGGCGGCTGTCGTCATGTATTATTCCTTG 669
BSNT_01402 670 TTCGCTATGGGCATTCATGCAGATATCAGGTATGTGTTCGGGGTGTTCGT 719
|..|..|||||.|||||.||.|||.||.|..||||.|||||.||.||.|.
RBAM_008530__ 670 TATGTCATGGGAATTCACGCGGATGTCCGCCATGTATTCGGTGTATTTGC 719
BSNT_01402 720 CATTGCGGCGATCGGAGGAATGATCAGCCTCGTGCCGGGCGGCTTCGGCT 769
||||||.||.|||||.|||||.|||||.||.||||||||.||.|||||.|
RBAM_008530__ 720 CATTGCCGCTATCGGGGGAATCATCAGTCTTGTGCCGGGAGGATTCGGTT 769
BSNT_01402 770 CGTTTGACCTTTTATTTTTGCTGGGGATGGAGCAGCTTGGCTATCATCAG 819
|||||||||||.|.|||.||||.||.|||.||.|..|.||||.||..|||
RBAM_008530__ 770 CGTTTGACCTTCTGTTTCTGCTCGGCATGCAGAATATGGGCTTTCCGCAG 819
BSNT_01402 820 GAGGCCATCGTTACTTCTATTGTGTTGTACAGGCTCGCCTATTCATTTAT 869
|||||..|.||.||.||.||.||..|.|||.||.|.|..|||||||||||
RBAM_008530__ 820 GAGGCGGTTGTGACATCCATCGTCATCTACCGGATTGTGTATTCATTTAT 869
BSNT_01402 870 CCCATTTATCTTGGGACTGTTCTTTGCCGCAGGCGACCTGACGGAAAATA 919
.||.|||.|.||.||.|||||||||||.||.|||||..|.||||||||||
RBAM_008530__ 870 TCCGTTTGTGTTCGGGCTGTTCTTTGCGGCTGGCGATTTAACGGAAAATA 919
BSNT_01402 920 CAATGAAGCGGCTCGAAACGAACCCGCGCATCGCACCGGCAATTGAGACG 969
|..|.||.|||||.|||.|.||.|||...||.||.||.||..|.||.|||
RBAM_008530__ 920 CGCTTAAACGGCTGGAATCAAATCCGAAGATGGCGCCTGCCGTGGAAACG 969
BSNT_01402 970 ACAAACGTTCTGCTTGTTGTTCAGCGTGCGGTATTAGTGAGAAT--TTTG 1017
||.|||||.||.||.||..|.|||||.||..|.|||.|.||..| |||
RBAM_008530__ 970 ACGAACGTGCTTCTCGTATTCCAGCGCGCTATCTTAATCAGGGTGCTTT- 1018
BSNT_01402 1018 CAAGGCTCGCTTTCCCTTATTGTGTTCGTAGCAGGTCTGATTGTCTTGGC 1067
|.||.|||||.||.|||.|.||.|||.|.||.||..|..|.||..||||
RBAM_008530__ 1019 -ACGGTTCGCTGTCGCTTTTGGTTTTCATGGCGGGAGTCGTCGTGCTGGC 1067
BSNT_01402 1068 CTCAGTTTCCTTGCCGATTGACAGGCTGACGGTTATACCGCACATTCCGC 1117
.||.||..||.||||||||||||||..||||||.||.|||||.|||||||
RBAM_008530__ 1068 GTCCGTCGCCCTGCCGATTGACAGGGAGACGGTCATCCCGCATATTCCGC 1117
BSNT_01402 1118 GCCCGGCGCT-TTTGCTGTTCAACGGCCTGTCCTTAAGCTCAGCACTCAT 1166
|||||||||| .|||| |||.||||...|.||.||||||.|.||..|.||
RBAM_008530__ 1118 GCCCGGCGCTCCTTGC-GTTTAACGCGTTATCGTTAAGCGCGGCTTTGAT 1166
BSNT_01402 1167 TCTGCTAATTTTGCCGATCGAGCTTTATAAACGGACAAAACGTTCCTACA 1216
|||..||||.||||||||.||..|.||.||||||||.||||||||.||..
RBAM_008530__ 1167 TCTTTTAATCTTGCCGATTGAATTATACAAACGGACGAAACGTTCTTATT 1216
BSNT_01402 1217 CGATGGCCATTACAGCGCTTGTCGGCGGCTTTGTGTTCAGCTTTTTAAAA 1266
|.|||||..||.|.|||||.||||||||.|||||||||||.||.||||||
RBAM_008530__ 1217 CAATGGCGGTTGCCGCGCTGGTCGGCGGTTTTGTGTTCAGTTTCTTAAAA 1266
BSNT_01402 1267 GGGCTTAACATCAGCGCGATATTCGTACTGCCGATGATTATCGTATTGCT 1316
||..|.||||||||||||||.||..|.|||||..|..|.|||||||||||
RBAM_008530__ 1267 GGATTGAACATCAGCGCGATCTTTATTCTGCCTGTCGTCATCGTATTGCT 1316
BSNT_01402 1317 TGTGCTATTGAAAAAA----CAATTTGTCCGCGAACAGGCATCCTATACA 1362
||||||.|| ||| ||.|||.||.|.||.|||||.||.|||||.
RBAM_008530__ 1317 TGTGCTGTT----AAAGCGGCAGTTTATCAGAGAGCAGGCTTCGTATACG 1362
BSNT_01402 1363 CTGGGACAATTGATATTCGCTGTGGCGCTGTTTACTGTGGCGCTCTTTAA 1412
||.||.||..||||.||.||.|..||.|||||||.|.|.||..|.|||||
RBAM_008530__ 1363 CTCGGCCAGATGATTTTTGCGGCCGCTCTGTTTATTATCGCCTTGTTTAA 1412
BSNT_01402 1413 CTACAATCTGATCGCGGGCTTTATTTGGGACCGGATGAAGAAGGTGCTGC 1462
|||||||||.||.||.||||||||||||||....|||||...|.||||||
RBAM_008530__ 1413 CTACAATCTCATTGCCGGCTTTATTTGGGATAAAATGAATCGGCTGCTGC 1462
BSNT_01402 1463 GTCACGAATATTTCGTCCACAGCACCTCGCATATTACACATGCAACCATC 1512
|.|||||.|||||||||||.|.||..|||||.||||||.||||.||.||.
RBAM_008530__ 1463 GCCACGATTATTTCGTCCATAACAATTCGCACATTACATATGCCACGATG 1512
BSNT_01402 1513 ATGGCGATCATCATTGTGCCGCTGTTCTTCTTGATATTTACAGTGGTCTA 1562
|.|||.||.||..|||||||||||||.|||.|..|.|||||..|..|.||
RBAM_008530__ 1513 ACGGCTATTATTGTTGTGCCGCTGTTTTTCCTTTTGTTTACGTTCTTTTA 1562
BSNT_01402 1563 TCATAAGAGAACGAAACCGATCGGAGAGCAAGCTGACCCTGAGCGTCTTG 1612
||||||.|||.||||.|||||||||||..|.||.||.|||||.|| |
RBAM_008530__ 1563 TCATAAAAGATCGAAGCCGATCGGAGAAGAGGCCGATCCTGAACG----G 1608
BSNT_01402 1613 CTG----CGTTTCTTAATGAAAAAGGCGGCAACGCGCTGAGCCATCTCGG 1658
||| |.|||.|....|||.|||||||.||.|||||.|||||||||||
RBAM_008530__ 1609 CTGAAGTCCTTTTTGGCGGAAGAAGGCGGAAATGCGCTCAGCCATCTCGG 1658
BSNT_01402 1659 TTTTCTTGGAGATAAGCGGTTTTATTTTTCCAGCGATGGGAATGCACTGC 1708
.|||||.||.|||||||||||||||||.||.|||||.||.||.||.||..
RBAM_008530__ 1659 CTTTCTCGGGGATAAGCGGTTTTATTTCTCAAGCGACGGCAAAGCGCTTT 1708
BSNT_01402 1709 TTCTGTTTGGGAAAATCGCCAGAAGGCTGGTCGTGCTCGGCGATCCGTCT 1758
|..||||..|..|.||..||||||||||.|||||||||||.||||||||.
RBAM_008530__ 1709 TATTGTTCAGCCAGATTTCCAGAAGGCTTGTCGTGCTCGGTGATCCGTCA 1758
BSNT_01402 1759 GGCCAAAGAGAATCATTCCCGCTCGTGCTGGAAGAATTTCTGAACGAAGC 1808
||.||.|||||.||.||.|||||.|||.|.||.|||||||||||.|||||
RBAM_008530__ 1759 GGACAGAGAGACTCTTTTCCGCTTGTGATTGAGGAATTTCTGAATGAAGC 1808
BSNT_01402 1809 GCATCAGAAGGGATTCAGTGTTTTGTTCTATCAAATTGAACGAGAGGACA 1858
||||.||.||||..|.|||||..||||.|||||.||.|||||.||.||..
RBAM_008530__ 1809 GCATAAGCAGGGGCTGAGTGTCATGTTTTATCAGATCGAACGTGAAGATC 1858
BSNT_01402 1859 TGGCGCTGTATCACGATTTTGGCTACAACTTCTTTAAATTGGGCGAGGAA 1908
||||||||||.||.||.||.|||||.||||||||.||..|.||.||.|||
RBAM_008530__ 1859 TGGCGCTGTACCATGACTTCGGCTATAACTTCTTCAAGCTTGGAGAAGAA 1908
BSNT_01402 1909 GCATATGTAGATTTAAATACATTTACCTTGACTGGGAAGAAAAAAGCCGG 1958
||.|..||.|||.|..|..|.|||||..|..|.||.|||||||||||.||
RBAM_008530__ 1909 GCGTTCGTGGATATGGAGGCCTTTACGCTCTCAGGTAAGAAAAAAGCGGG 1958
BSNT_01402 1959 CCTTCGGGCAATCAATAACCGCTTTGAGCGGGAGGAGTATACTTTCCGTG 2008
.||.|||||.||.||.|||...|||||.||.||.|..||.||.||.|.||
RBAM_008530__ 1959 GCTGCGGGCGATTAACAACAAATTTGACCGCGAAGGCTACACATTTCATG 2008
BSNT_01402 2009 TGGATCATCCCCCATTTTCTGATGCGTTTTTGGAGGAGCTGAAGCAAATC 2058
|.|...|.||.||.|||||....|.||||.|.|...|||||||..|.||.
RBAM_008530__ 2009 TCGGGGAACCGCCGTTTTCCTCCGAGTTTATCGCCAAGCTGAAAGACATT 2058
BSNT_01402 2059 TCAGACGAATGGCTCGGCTCGAAAAAAGAGAAGGGATTCTCGCTCGGATT 2108
||.||||||||||||||..|||||||||||||.||.||.||.|||||.||
RBAM_008530__ 2059 TCGGACGAATGGCTCGGACCGAAAAAAGAGAAAGGTTTTTCTCTCGGTTT 2108
BSNT_01402 2109 TTTTGATCCTTCC-----TATTT---ACAGAAAGCGCCGATCGCCTATAT 2150
.||.|| || ||||| |||| ||||||||.||.||..|
RBAM_008530__ 2109 CTTCGA-----CCGGGATTATTTGGAACAG---GCGCCGATTGCTTACGT 2150
BSNT_01402 2151 GAAAAATGCAGAAGGAGAGATCGTTGCATTCGCAAATGTCATGCCGATGT 2200
||||.|.||.|||||.||||||.|.||.||.||.||..|.||||||||||
RBAM_008530__ 2151 GAAAGACGCGGAAGGGGAGATCATCGCTTTTGCCAACCTGATGCCGATGT 2200
BSNT_01402 2201 ACCAGGAAGGAGAGATATCGGTCGATCTGATGCGCTATCGCGGCGA---- 2246
|.||||||||.||||||||.|||||..|||||||.||||| ||
RBAM_008530__ 2201 ATCAGGAAGGCGAGATATCCGTCGACTTGATGCGTTATCG----GAAAAG 2246
BSNT_01402 2247 CGCTCCAAATGGCATTATGGACGCATTGTTTATCCGTATGTTTTTATGGG 2296
|||.||.||.||.|||||||||||..|.||.||||||.|||||.|.||||
RBAM_008530__ 2247 CGCGCCGAACGGTATTATGGACGCGCTTTTCATCCGTCTGTTTCTCTGGG 2296
BSNT_01402 2297 CAAAGGAAGAGGGCTGTACGTCATTTAATATGGGGATGGCACCCTTGGCC 2346
|..|||||.|.||||.|||..|.||.||||||||.|||||.||.|||.|.
RBAM_008530__ 2297 CGCAGGAAAAAGGCTATACTACCTTCAATATGGGCATGGCGCCTTTGTCA 2346
BSNT_01402 2347 AATGTCGGCACTGCCTTTACATCCTTCTGGTCCGAAAGGTTTGCCGCTGT 2396
||.||.||.||.||.|||||.||.||||||||.|||||..|.||.||.||
RBAM_008530__ 2347 AACGTAGGAACGGCTTTTACTTCTTTCTGGTCGGAAAGAATCGCGGCCGT 2396
BSNT_01402 2397 CATTTTTAATAATGTCAGATACATGTACAGTTTCAGCGGCCTAAGAGCCT 2446
|||.||.||.||.|||.|.||.||||||||.||||||||.||..|.||||
RBAM_008530__ 2397 CATCTTCAACAACGTCCGGTATATGTACAGCTTCAGCGGGCTGCGGGCCT 2446
BSNT_01402 2447 TTAAAGAAAAATATAAACCGGAGTGGCGAGGGAAATACTTAGCGTATCGG 2496
|||||||||||||.||||||||||||||.|||||||||||.|||||.||.
RBAM_008530__ 2447 TTAAAGAAAAATACAAACCGGAGTGGCGCGGGAAATACTTGGCGTACCGC 2496
BSNT_01402 2497 AAAAACAGATCTCTTTCTGTCACCATGTTCCTCGTTACACGTCTGATTGG 2546
|||||||||||.||.||.|||||.|||.|||||||.||.||.|||||.||
RBAM_008530__ 2497 AAAAACAGATCGCTGTCCGTCACGATGATCCTCGTCACCCGCCTGATCGG 2546
BSNT_01402 2547 CAAAAGC-AAAAAAGACTCCGTCTAA 2571
.||||.| |||||||||.|||| |||
RBAM_008530__ 2547 AAAAACCAAAAAAAGACGCCGT-TAA 2571
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