Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01368 and RBAM_008420

See Amino acid alignment / Visit BSNT_01368 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:05
# Commandline: needle
#    -asequence dna-align/BSNT_01368___yfiD.1.9828.seq
#    -bsequence dna-align/RBAM_008420___yfiD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01368___yfiD-RBAM_008420___yfiD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01368___yfiD-RBAM_008420___yfiD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01368___yfiD
# 2: RBAM_008420___yfiD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 414
# Identity:     303/414 (73.2%)
# Similarity:   303/414 (73.2%)
# Gaps:          18/414 ( 4.3%)
# Score: 1048.5
# 
#
#=======================================

BSNT_01368___      1 ATGAATAAATCATTTGAAATTGGCACATTACTTTTAAGAGTTATTACAGG     50
                     ||||||||||||||.||||..||.|||.|.||||||||.|||.|.|||||
RBAM_008420__      1 ATGAATAAATCATTCGAAACAGGAACACTGCTTTTAAGGGTTGTAACAGG     50

BSNT_01368___     51 TATTATCTTTTTTGTTCACGGTTTATCAAAGTTTCAGGGAATGGAGGGCA    100
                     |||||||||||||||||||||||||||.||||||||.||..||||.||.|
RBAM_008420__     51 TATTATCTTTTTTGTTCACGGTTTATCCAAGTTTCAAGGGTTGGAAGGAA    100

BSNT_01368___    101 CCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTC    150
                     |....|||||||||...|||||.||..||||...||||||||..||||||
RBAM_008420__    101 CTGCGCAATTTTTCCAGAGCATCGGGATTCCGGCCTTTATGGTCTATGTC    150

BSNT_01368___    151 ATCGCAGCGATTGAACTCATTGGCGGAGTGCTTGTCTTCTTCGGATTGGC    200
                     |||||..|||||||.||..|.|||||.||.||..||||.|||||.|||||
RBAM_008420__    151 ATCGCGACGATTGAGCTTGTCGGCGGGGTTCTGATCTTTTTCGGTTTGGC    200

BSNT_01368___    201 TACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATCGGTGCCATCA    250
                     .||.||.|||.||||.||.|||||.||..|.|||.|..||||.||||||.
RBAM_008420__    201 AACGCGCATTATCGGCGTTCTGTTTGCCGTCACATTAGTCGGCGCCATCT    250

BSNT_01368___    251 TCACTGTTAAGCTGAAAGCGCCATTCATGGGC-AATGCAGAATTTGATT-    298
                     ||||.|..|||||.....|.|||||.|||||| .|| |.|||||||||| 
RBAM_008420__    251 TCACGGCGAAGCTTTCCTCACCATTTATGGGCGGAT-CGGAATTTGATTT    299

BSNT_01368___    299 -ACCTT-CTGCTTTTGACATCCATTCACCTGGCGCTTACTGGAAGCCGAT    346
                      |.||| |||.||   .|.||.||||||.|.||||||.|.||||||||..
RBAM_008420__    300 CATCTTACTGGTT---GCGTCAATTCACTTAGCGCTTTCAGGAAGCCGTC    346

BSNT_01368___    347 TCCTGGCGCTGGA----CCCATTTGTGTTTAAAGGAAAAAAGAACAGAAA    392
                     |.||..|..||||    |.|.||    ||.|||..||||||| ..|||||
RBAM_008420__    347 TGCTTTCATTGGATCAGCTCCTT----TTCAAATCAAAAAAG-GGAGAAA    391

BSNT_01368___    393 C-GTTTCAGCATAA    405
                     | .|||||||||||
RBAM_008420__    392 CTTTTTCAGCATAA    405


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