Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01364 and RBAM_008390
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:04
# Commandline: needle
# -asequence dna-align/BSNT_01364.1.9828.seq
# -bsequence dna-align/RBAM_008390.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01364-RBAM_008390.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01364-RBAM_008390.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01364
# 2: RBAM_008390
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2348
# Identity: 1844/2348 (78.5%)
# Similarity: 1844/2348 (78.5%)
# Gaps: 34/2348 ( 1.4%)
# Score: 7152.0
#
#
#=======================================
BSNT_01364 1 ATGGAAAATTATACAACGTTTTTAGGTCTTTACAAACCTG--AAAGCACT 48
|||..|||.|||||.||.||.|||||.|||||||||||.| |||| |.
RBAM_008390 1 ATGACAAACTATACGACTTTCTTAGGACTTTACAAACCCGATAAAG--CC 48
BSNT_01364 49 GAAAGTATTGAAATTGATTCCAAGC-TTGCCGAGAATTTCGAAACGATTG 97
|||.|.||||||.|||| |||| ||||..|.||.||.|||.||||||
RBAM_008390 49 GAAGGGATTGAAGTTGA----AAGCATTGCTCAAAACTTTGAAGCGATTG 94
BSNT_01364 98 ATAGTAAAATTGGGATTGCATTAAGTAATGGAATAACAACTTTTGAAAAC 147
|.||.|||||.||...|||..|.||.|||||.|...||||||.||||||.
RBAM_008390 95 ACAGCAAAATCGGTGCTGCGCTTAGCAATGGCACGTCAACTTATGAAAAT 144
BSNT_01364 148 TTAAATGAAAGACTCAAAATGTATGAGAACAGATTTGAGTACCT-TGA-T 195
|||||.||||||||.||.||||||||.||||||||||| ||.| ||| .
RBAM_008390 145 TTAAACGAAAGACTTAACATGTATGAAAACAGATTTGA--ACATGTGACA 192
BSNT_01364 196 GAACGAAACGTAATGGATTATGGAGCTAAAGGAGACGGGGTCACAGATGA 245
||.||.|||||.|||||||.||||||||||||.|||||.||.||.|||||
RBAM_008390 193 GAGCGGAACGTTATGGATTTTGGAGCTAAAGGTGACGGCGTAACGGATGA 242
BSNT_01364 246 TACGCAAGCATTTCATGATGCGATGGCCGAAGGCGGTTATCTCATAAAAG 295
||||||.||||||||||||||.||||||||.||.||||||.||.|||.||
RBAM_008390 243 TACGCAGGCATTTCATGATGCCATGGCCGACGGAGGTTATGTCGTAACAG 292
BSNT_01364 296 TCCCTGCAGGCGTATTTAGGGTATCTGGCTTGCTCGTTCCTTCGAATACA 345
|.||.||.||.|||||.||...|||.||.|||.|.|||||.||.||||||
RBAM_008390 293 TTCCCGCGGGTGTATTCAGAACATCGGGATTGTTTGTTCCGTCAAATACA 342
BSNT_01364 346 ATGCTGGTTGGAGCGGGTAAAAAAAGGACCATCATCAAGTTATTAGACGA 395
|||||.||.|||||.||.||.|||||.||..||||.||.|||||||||||
RBAM_008390 343 ATGCTTGTCGGAGCAGGCAAGAAAAGAACGGTCATTAAATTATTAGACGA 392
BSNT_01364 396 TACGCCAGTTGGTCACTCTGTACTCACCAATAGTGATCATACAAATGGTA 445
.||.||.||.||.||.|||||.||.|||||.||||||.||||.||.||||
RBAM_008390 393 AACACCGGTCGGCCATTCTGTTCTGACCAACAGTGATTATACGAACGGTA 442
BSNT_01364 446 ATGAAAATATCTACATTGGACATTTGACACTGGACTGGAATAAAGATACG 495
||||||||||.|||.|.||.|||.|.||..||||.|||||.||.||||||
RBAM_008390 443 ATGAAAATATTTACGTCGGCCATCTCACTTTGGATTGGAACAAGGATACG 492
BSNT_01364 496 CGTCCTGCTGGATGGAAGATCCCTAAGGGGCCCACTTCAAGCTGCTTGCT 545
||||||.|.||.||||||||.||.||.||.||||||||||||||.|||||
RBAM_008390 493 CGTCCTTCCGGCTGGAAGATTCCGAAAGGCCCCACTTCAAGCTGTTTGCT 542
BSNT_01364 546 TTTTGCAAATGTGGATTACTCTTTTGTAGAGCATGTTTTTGCAAAAAATG 595
||||||.|||||.||.||.||||||||.||||||||.|||||.||.||.|
RBAM_008390 543 TTTTGCGAATGTTGACTATTCTTTTGTCGAGCATGTGTTTGCGAAGAACG 592
BSNT_01364 596 CCGGCCTTCACGGGTTTGATGCTACAAGCCCTAATTATAACAGACACGGA 645
|||||||.|||||.||||||.||||||||||.||.|||||||||||.|||
RBAM_008390 593 CCGGCCTGCACGGCTTTGATTCTACAAGCCCGAACTATAACAGACATGGA 642
BSNT_01364 646 GAAAATGATGATCCTACCTTTTATCAGCCTGGTGGCTGCAACTTTGTAAC 695
|||||.||||||||.||.|.|||||||||....|||||.|||||||||||
RBAM_008390 643 GAAAAAGATGATCCAACTTATTATCAGCCCAACGGCTGTAACTTTGTAAC 692
BSNT_01364 696 CTTCTCATATTGCGAAGCAACAGGCTCTGGCGATGATAATTTCACATGTC 745
.||.|||.||||.|||||||||||.||.||.||||||||.||.||.||||
RBAM_008390 693 GTTTTCACATTGTGAAGCAACAGGGTCCGGGGATGATAACTTTACTTGTC 742
BSNT_01364 746 ACTTTGGAAAGCATACGACTTTTAGTCATTGTCTTTCTTACCATCCGATG 795
|||||||.||.||.||||||||.||||||||.||.|||||.|||||.|||
RBAM_008390 743 ACTTTGGGAAACACACGACTTTCAGTCATTGCCTCTCTTATCATCCAATG 792
BSNT_01364 796 GGGTTAAATGATGGGTCTTCAAATACAAACTGTTTTGAAATCGATGATGG 845
|||.||||.|||||..||||.||.||.||||||||||||||.|||||.||
RBAM_008390 793 GGGCTAAACGATGGAACTTCTAACACGAACTGTTTTGAAATTGATGACGG 842
BSNT_01364 846 CTCTCAGGATGTAATGGTTGATAGCTGCATCGCAATTGGAGGAGTTCGAG 895
||||||.||.||||||.|||||||.||.|||.|||||||||||||.||||
RBAM_008390 843 CTCTCAAGACGTAATGATTGATAGTTGTATCTCAATTGGAGGAGTCCGAG 892
BSNT_01364 896 GATTTGAAATTAAAGCTCATGATTATGCTCCGGCTGCAAAAAGAGTTCAA 945
|.|||||.|||||.||.||.|.||||||.||||||||.||.|||||.||.
RBAM_008390 893 GCTTTGAGATTAAGGCACACGGTTATGCACCGGCTGCGAAGAGAGTACAG 942
BSNT_01364 946 CTTGTGAACTGCCGTGCCTATGAAAATGCAATTAGTTTTTGCATTCGGCA 995
|||||.|||||.||.||.||.||||||||.|||.|.|.|.|||||||.||
RBAM_008390 943 CTTGTTAACTGTCGCGCATACGAAAATGCCATTGGATATAGCATTCGCCA 992
BSNT_01364 996 TATAGGACACCACACAGCAAGTGATCCTCAATCAGCATCAGCTCATGACG 1045
|||.||.||||||||||||||.||||||||.|||||..||||.|||||.|
RBAM_008390 993 TATCGGTCACCACACAGCAAGCGATCCTCAGTCAGCGACAGCCCATGATG 1042
BSNT_01364 1046 TTCAGCTGGCTAACTGTATCGCATATAACCCTAAGCCGAGTGATCTGTAC 1095
|.|||||.||.||.|||||||||||||||||||||||||.||||||.|||
RBAM_008390 1043 TGCAGCTTGCGAATTGTATCGCATATAACCCTAAGCCGAATGATCTTTAC 1092
BSNT_01364 1096 AAAGGGGCAGGGCCGAATGCATTGCAAATTTCAGGTTACGATGGCGTCAA 1145
||||||||.||.||.||.||.||||||||.||.||.||.|||||.||.|.
RBAM_008390 1093 AAAGGGGCGGGTCCAAACGCGTTGCAAATCTCCGGATATGATGGTGTGAG 1142
BSNT_01364 1146 TGTGGTTAATTTTCATGCTATATGCGATGATTCCTCCATTAACTATAAGG 1195
|||.||.|||||.||||||.|.||.||||||...||.|||.|.|||||||
RBAM_008390 1143 TGTTGTGAATTTCCATGCTGTTTGTGATGATAGTTCAATTGATTATAAGG 1192
BSNT_01364 1196 GAAATTCAGTCGTAAGCGTGTATTATAAAGGGCGTCTAATCAATTTAAAG 1245
|.|||||.||.||.|||||.|.|||||||||.||..||||.|..||||||
RBAM_008390 1193 GTAATTCGGTAGTCAGCGTATTTTATAAAGGACGCTTAATTAGCTTAAAG 1242
BSNT_01364 1246 AATATAACGATTCGAGGATTTAAAACTGCTGATAATGATCTTTATATTGT 1295
||||||||.|||||.||||||||.|||||.||.||||||.|.||||||||
RBAM_008390 1243 AATATAACCATTCGCGGATTTAAGACTGCAGACAATGATTTATATATTGT 1292
BSNT_01364 1296 AGGTGGCGACAATTCTGTCGGCAAGGTAATGATTGATGGTGTGACATTGA 1345
.||.||.||.||.||.||.||.||.||||||.|.||||||||.||.||||
RBAM_008390 1293 CGGCGGGGATAACTCAGTAGGAAAAGTAATGGTGGATGGTGTCACCTTGA 1342
BSNT_01364 1346 TCGATTCAGCCGAAAAGGGTGTTGTTTTTGGGAGCGGTATGTACGAATCT 1395
|.||.||.|...||||.||.||||..|||||.|||||.||||||||.|||
RBAM_008390 1343 TTGACTCCGGAAAAAAAGGAGTTGCATTTGGCAGCGGAATGTACGAGTCT 1392
BSNT_01364 1396 GTAGTTAGTAATGTATGGGGGCAAAGATCGCCTAAAAATAACAGTGGTAC 1445
||.|||||||||||.|||||.||.|||||.||.||||||||.||.||.||
RBAM_008390 1393 GTTGTTAGTAATGTTTGGGGACAGAGATCTCCAAAAAATAATAGCGGGAC 1442
BSNT_01364 1446 AGTGGGAATTTTTTCTGTTGACCCTGATCTTAATGTTTCTAATTGTGACT 1495
|||.|||||||.|||....||.||.|||||||||||.||.||||||||.|
RBAM_008390 1443 AGTTGGAATTTATTCCTCAGATCCAGATCTTAATGTATCCAATTGTGATT 1492
BSNT_01364 1496 TTTCAGGCTACGAAACAGATTTTAAGATTGGCGGCGTTGTGACGCCGTAC 1545
|||||||.||.|||||.||.|||||.|||||.||.|..||.||.||.||.
RBAM_008390 1493 TTTCAGGTTATGAAACTGACTTTAACATTGGAGGAGCAGTCACTCCTTAT 1542
BSNT_01364 1546 TTTTTGTTTAAACATAAAGGAAGCGGGATTATTGGCTCTCGTGATTCCCA 1595
||.||.||.||||||||||||||||||.|.||||||||.|||||.||.||
RBAM_008390 1543 TTCTTATTCAAACATAAAGGAAGCGGGGTCATTGGCTCCCGTGAATCTCA 1592
BSNT_01364 1596 CGCTACTGGAAATAATAATTTTGTAGCTGGATCTGTTCGAAGCAGAGCAA 1645
||||||.||.||||||||||||||.|||||.||||||||..|.|||||||
RBAM_008390 1593 CGCTACAGGCAATAATAATTTTGTGGCTGGTTCTGTTCGGGGAAGAGCAA 1642
BSNT_01364 1646 CTGGGGCTGCTCAATCTTCTGTGATAGCCTCATATAATACGATCAATCCG 1695
|.||.||.|||||||||||.|||.|..|.||.||.|||||.||.||||||
RBAM_008390 1643 CCGGAGCGGCTCAATCTTCAGTGCTTTCTTCGTACAATACAATTAATCCG 1692
BSNT_01364 1696 AACTCAGACTCTGTTGCTTTAGGATGGGCAAGT---GGGAGCACACCATC 1742
||.|||||.|||||.||..|.||.|||| || ||.|||||.||.||
RBAM_008390 1693 AATTCAGATTCTGTAGCACTTGGCTGGG---GTGCCGGCAGCACTCCGTC 1739
BSNT_01364 1743 CTCATCAAACAGAAAGATAGAATTTCATGCAAAAGATGGAACGATTAAGG 1792
.|||.|.|||||||||||.||..||||.||||||||.|||||.|||||||
RBAM_008390 1740 ATCAGCCAACAGAAAGATTGAGCTTCACGCAAAAGAAGGAACAATTAAGG 1789
BSNT_01364 1793 CTTCAGGAAGCATAAAAAGTTCCCAAACGTTCTCGGATTACGCTGAATAT 1842
||.|.|||.||.|||.|.|||||...||.|||||.||.|||||.||.|||
RBAM_008390 1790 CTACGGGAGGCGTAACAGGTTCCTCGACATTCTCTGACTACGCCGAGTAT 1839
BSNT_01364 1843 TTTGAGAGCCTAAGCGGTGAAAAAATTCCGGCAGGAACCCTAGTTACTTT 1892
|||||.|||||.||.||.|||||.||||||.|.|||||.||.||.||..|
RBAM_008390 1840 TTTGAAAGCCTGAGAGGGGAAAAGATTCCGACGGGAACACTTGTCACACT 1889
BSNT_01364 1893 GGAGGGTGATAAAATTAGACCTGCAAAAAAAGGTGACTTTATGCTTGGAG 1942
.||.||||||||.||.|||||.||..|||||||||||.|.||||||||.|
RBAM_008390 1890 TGAAGGTGATAAGATCAGACCGGCTGAAAAAGGTGACCTCATGCTTGGGG 1939
BSNT_01364 1943 TTATTTCTGAAACAGCTGGTGTGATACTTGGTGAGTCAAGCTTCCATTGG 1992
|.|||||.||.||.||.||.|||||.|||||||||||.||.||.||.|||
RBAM_008390 1940 TCATTTCCGAGACCGCCGGAGTGATTCTTGGTGAGTCGAGTTTTCACTGG 1989
BSNT_01364 1993 TCTGGAAGATACCTGAAGAATGATTTTGGCGGGTATATTTATGAAAAACA 2042
||.|||.|||||.|.||||||||.||||||||.|||.||||||||.||||
RBAM_008390 1990 TCGGGACGATACGTAAAGAATGAATTTGGCGGCTATGTTTATGAAGAACA 2039
BSNT_01364 2043 GAAAGATGCCAATGGCCAAATCGTCATGGCGCCTATGGAAAACCCTGATT 2092
|||||||||.||||||||.|..|||||||||||.|.||||||.||.||.|
RBAM_008390 2040 GAAAGATGCGAATGGCCATACGGTCATGGCGCCAAAGGAAAATCCGGACT 2089
BSNT_01364 2093 ATAAGCCAGATAAGA--ACTATGCCTCTAGGGAAGAGAGGGATGAATGGA 2140
.|..|||.| |||| ||||.||.||.||.||||||||.||.||.||||
RBAM_008390 2090 TTCGGCCTG--AAGAAGACTACGCTTCAAGAGAAGAGAGAGACGAGTGGA 2137
BSNT_01364 2141 ATGTTGTGGGCCTTGTAGGACAGGTTTATGTAAGATGCGA-CAGCACAGT 2189
|..||||.||.||..|.||.|||||.|||||.|||||||| .|| ||.||
RBAM_008390 2138 ACATTGTCGGACTCATCGGCCAGGTATATGTCAGATGCGATGAG-ACTGT 2186
BSNT_01364 2190 AGAAGCCGGAGACTTTATTCAAGCGCATAACAACGGAATTGCTACAAAAA 2239
..||||.|||||.||||||||.||.||| ||.||.|||||.||||||.
RBAM_008390 2187 GAAAGCGGGAGATTTTATTCACGCTCAT---AATGGGATTGCAACAAAAT 2233
BSNT_01364 2240 CGGTAT-CTCCTAAACAAAGGTGGCAGGTCATGAGAGTCATCAAAGAGTT 2288
|.| || ||||.||.||..|.|||||||||||||.|||.|||||.|||||
RBAM_008390 2234 CTG-ATGCTCCAAACCAGCGCTGGCAGGTCATGAAAGTGATCAATGAGTT 2282
BSNT_01364 2289 CGA--CAAAAGTAAGGGATATGGAGTGGTTTTAGTTTTTATTCGGTAA 2334
.|| |..| |||.||||..||.||.|.|.|.|||||||||||.|||
RBAM_008390 2283 TGATGCTGA--TAAAGGATTCGGGGTCGCTCTCGTTTTTATTCGTTAA 2328
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