Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01347 and RBAM_008320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_01347___acoC.1.9828.seq
# -bsequence dna-align/RBAM_008320___acoC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01347___acoC-RBAM_008320___acoC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01347___acoC-RBAM_008320___acoC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01347___acoC
# 2: RBAM_008320___acoC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1269
# Identity: 873/1269 (68.8%)
# Similarity: 873/1269 (68.8%)
# Gaps: 147/1269 (11.6%)
# Score: 2944.0
#
#
#=======================================
BSNT_01347___ 1 ATGGCGGTAAAAGTAGTGATGCCAAAATTGGGAATGGCCATGAAACAAGG 50
|||||.|||||||||||.|||||.||..||||||||||.|||||..||||
RBAM_008320__ 1 ATGGCTGTAAAAGTAGTAATGCCGAAGCTGGGAATGGCGATGAAGAAAGG 50
BSNT_01347___ 51 GGAAGTATCGATATGGAATAAAAAAGTAGGCGACCCGGTTGAAAAGGGAG 100
.||||||||..|.||||||||||||||.||||||||||||||||||||||
RBAM_008320__ 51 TGAAGTATCCGTCTGGAATAAAAAAGTCGGCGACCCGGTTGAAAAGGGAG 100
BSNT_01347___ 101 AAAGCATTGCCAGCATTCAA-TCGGAGAAAATTGAAATGGAGATCGAAGC 149
|||||||.||||||| |||| |||||.|||||.||||||||.||.|||||
RBAM_008320__ 101 AAAGCATCGCCAGCA-TCAACTCGGAAAAAATAGAAATGGAAATAGAAGC 149
BSNT_01347___ 150 GCCTGAAAAAGGAACGCTGATCGATATCAAAGTGAAAGAGGGAGAAGAGG 199
||||||||..||.|||||..||.||||.|||||.|||||||||||||..|
RBAM_008320__ 150 GCCTGAAAGCGGCACGCTTCTCCATATTAAAGTCAAAGAGGGAGAAGGAG 199
BSNT_01347___ 200 TTCCGCCCGGCACAGCGATCTGCTATATCGGGG---ACGCCAATGAGTCG 246
|.|||||.||.||..|.|||||.|||||||||| |||.|.|.|| .
RBAM_008320__ 200 TCCCGCCGGGAACGCCCATCTGTTATATCGGGGAAAACGGCGAAGA---A 246
BSNT_01347___ 247 GTGCAGGAAGAGGCGAGCGCGCCTGTTGCTGAAGACAAT------ATGCC 290
||||.|||..|||.| |||||.|.|.||||| ||| |..||
RBAM_008320__ 247 GTGCTGGAGAAGGAG---GCGCCGGCTCCTGAA---AATGCAGGGAAACC 290
BSNT_01347___ 291 GCAAGCCGTTCAGCCCGTCAAACAAGAAAACAAACCCGC------AGCC- 333
||||.|.| |||..|||.|.|..||||| ||||
RBAM_008320__ 291 GCAATCTG------------AACCTGAACATATTCCCGCTCCCAAAGCCG 328
BSNT_01347___ 334 TCCAAA-----AAAGATCGAATGAAAATATCTCCAGTCGCCAGGAAAATA 378
|.|||| |||.|.||..|||||||||||||.||.|||.|.|||||.
RBAM_008320__ 329 TGCAAAAGCGTAAACACCGCGTGAAAATATCTCCCGTTGCCCGAAAAATG 378
BSNT_01347___ 379 GCAGAAAAAGCAGGATT-AGACCTAAAACAACTGAAAGGAACTGGACCAG 427
||.||.|||||.||.|| |.|..|.|||| .|||||.||.||.||.||.|
RBAM_008320__ 379 GCGGAGAAAGCCGGGTTGAAAGTTGAAAC-GCTGAACGGGACGGGGCCCG 427
BSNT_01347___ 428 GCGGACGAATCGTGAAGGATGACGTAACAAAGGCTCTT----------GC 467
|.||..|||||||.||.|.||||||.|..||||| |.| ||
RBAM_008320__ 428 GAGGCAGAATCGTAAAAGCTGACGTCATCAAGGC-CATGAAGACGGAAGC 476
BSNT_01347___ 468 TGAACAGAAAAAAGATCAGGCAAAGCCTGTGTCGGAGCAGA------AAG 511
|||||.| |||.| .||||..|||| |..
RBAM_008320__ 477 TGAACCG---------CAGTC---------TTCGGTTCAGACGGCACAGC 508
BSNT_01347___ 512 CGCAGGAAATCCCGGTGACAGGCATGAGAAAGGTCATCGCTGCCCGAATG 561
||.||||||..||||...|||..||||||||.|||||.||.|.|||||||
RBAM_008320__ 509 CGGAGGAAAAACCGGCTTCAGCGATGAGAAAAGTCATTGCAGACCGAATG 558
BSNT_01347___ 562 CAGGAAAGCTTGGCAAACAGCGCGCAGCTGACGATCACGATGAAAGCTGA 611
||..|||||.||..|||||||||.|||||||||.|.||.||||||||.||
RBAM_008320__ 559 CACAAAAGCCTGCAAAACAGCGCCCAGCTGACGTTGACTATGAAAGCGGA 608
BSNT_01347___ 612 TATCACCAAGCTTGCCACTCTTCAAA-------AACAGCTTTCACCAACT 654
.||.||..|||||| |.||| |.|||| ||.||.||.
RBAM_008320__ 609 CATTACGGAGCTTG-------TAAAATGGCAGGAGCAGC--TCGCCGACA 649
BSNT_01347___ 655 GCG-GAAGA----GAGATACGGCACAAAACTGACGATCACTCATTTTGTC 699
||| |||.| ||| |||....|||||||||.||||.|||||.||.
RBAM_008320__ 650 GCGCGAAAAAGCGGAG---CGGTGTTAAACTGACGGTCACACATTTCGTA 696
BSNT_01347___ 700 TCAAGAGCCGCCGTTCTCGCTCTGCAAGCTCACCCTGTGCTGAACAGCTT 749
||..|.|||||.||.||.||.|||.||...||.||||.|||||||||||.
RBAM_008320__ 697 TCCCGGGCCGCGGTGCTTGCGCTGAAACAGCATCCTGAGCTGAACAGCTC 746
BSNT_01347___ 750 TTATCAAAATGAGCGCATCATCACACATCCCCATGTGCACCTTGGTATGG 799
|||||||.|.|||||.||||||||..||||..||||.||||||||.||||
RBAM_008320__ 747 TTATCAAGAGGAGCGGATCATCACCTATCCATATGTCCACCTTGGGATGG 796
BSNT_01347___ 800 CTGTAGC-CTTGGAAAATGGCTTAGTGGTGCCTGTCATCCGCCATGCTGA 848
|.||..| ||| |||||.||..|.||.|||||.||.||.||..||||.||
RBAM_008320__ 797 CGGTTTCTCTT-GAAAACGGTCTCGTCGTGCCGGTGATTCGGGATGCGGA 845
BSNT_01347___ 849 AAAGCTATCGCTGATAGAACT---GGCTCAATCTATC-TCAGAAAAT-GC 893
||||||.||..|..|.||.|| ||.||| | ||||.|.|| |
RBAM_008320__ 846 AAAGCTTTCATTCCTTGAGCTTGCGGATCA------CATCAGCACATCG- 888
BSNT_01347___ 894 CAAAAAAGCACGCGAGGGACGTGCGGGAA-------------GCGAAGAA 930
||||||..| |.||||||| |.||.||.
RBAM_008320__ 889 -------GCACGCCGG----GCGCGGGAAGGCAATGCTTCCGGAGATGAT 927
BSNT_01347___ 931 CTGCAAGGATCTACTTTCTCCATTACAAACCTTGGCGCGTT-TGGAGTTG 979
|||||.|||||.||.||.||.||||||||.||.|| |.||| .|||.|||
RBAM_008320__ 928 CTGCACGGATCGACATTTTCTATTACAAATCTCGG-GGGTTACGGAATTG 976
BSNT_01347___ 980 AGCATTTCACACCGATACTAAATCCGCCGGAAACAGGCATTCTCGGCATC 1029
||||||||||.|||||.||.||||||||.|||.|.||.||||||||..|.
RBAM_008320__ 977 AGCATTTCACCCCGATTCTTAATCCGCCTGAAGCCGGTATTCTCGGAGTG 1026
BSNT_01347___ 1030 GGAGCAAGCTATGACACGCCGGTGTATCAAGGGGAGGAGATCGTCAGAAG 1079
||.|||||||||||.|||||.|.||.|.||||.||.|||.|.||||.|||
RBAM_008320__ 1027 GGCGCAAGCTATGAAACGCCTGCGTTTAAAGGAGATGAGCTTGTCAAAAG 1076
BSNT_01347___ 1080 CACGATCCTGCCACTCAGCCTGACATTTGATCACAGAGCGTGTGACGGCG 1129
|||.||.|||||.||.|||||.||.|||||||||||||..|||||||||.
RBAM_008320__ 1077 CACCATGCTGCCGCTGAGCCTTACCTTTGATCACAGAGTATGTGACGGCT 1126
BSNT_01347___ 1130 CCCCTGCCGCTGCATTCCTGAAGGCGATGAAAAC-ATATTTGGAAGAACC 1178
|.||.||.||.|..||||||||..||.|.|||.| .|..|| |||||.||
RBAM_008320__ 1127 CACCGGCTGCGGACTTCCTGAAAACGGTCAAAGCGCTGCTT-GAAGAGCC 1175
BSNT_01347___ 1179 CGCAGCATTAATTTTATAG 1197
.||.|.|||.|||||||||
RBAM_008320__ 1176 GGCCGGATTGATTTTATAG 1194
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