Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01338 and RBAM_008250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:02
# Commandline: needle
# -asequence dna-align/BSNT_01338___yfjO.1.9828.seq
# -bsequence dna-align/RBAM_008250___yfjO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01338___yfjO-RBAM_008250___yfjO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01338___yfjO-RBAM_008250___yfjO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01338___yfjO
# 2: RBAM_008250___yfjO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1405
# Identity: 1181/1405 (84.1%)
# Similarity: 1181/1405 (84.1%)
# Gaps: 8/1405 ( 0.6%)
# Score: 4999.0
#
#
#=======================================
BSNT_01338___ 1 GTGAACCAACAAAAGAAACAGGCGCCCGTCGAACTGAAGGTCGGACAAAC 50
|||||.|||||..|.|||.|||||||.|.||||.||||..|||||||.||
RBAM_008250__ 1 GTGAATCAACATCAAAAAAAGGCGCCTGCCGAATTGAAAATCGGACAGAC 50
BSNT_01338___ 51 CTTTCCGCTGACGATTAAGCGTCTCGGCATTAACGGAGAAGGTGTCGGCT 100
.|||||||||||.||.||.||||||||||||||||||||.||.|||||||
RBAM_008250__ 51 ATTTCCGCTGACCATCAAACGTCTCGGCATTAACGGAGAGGGCGTCGGCT 100
BSNT_01338___ 101 ATTTTAAGAAAAAAGTCGTCTTCGTGCCCGGCGCGCTTCCTGGCGAAGAA 150
||||||||||||||||.||||||||.||||||||.||.||.||.||||||
RBAM_008250__ 101 ATTTTAAGAAAAAAGTTGTCTTCGTTCCCGGCGCTCTGCCCGGTGAAGAA 150
BSNT_01338___ 151 GTTGTTGTGCAGGCCACAAAGGTCCAGCCGAAGTTTTCGGAGGGCCGCAT 200
||.||||...|.||.|||||.||.||||||||.|||||.||.|..|||.|
RBAM_008250__ 151 GTCGTTGCCGAAGCGACAAATGTGCAGCCGAAATTTTCAGAAGCACGCGT 200
BSNT_01338___ 201 TAAGAAAATCCGCAAGGCGTCTGAGCACCGGGTGGCACCGCCTTGCCCTG 250
.||.||||||||||||.|||||||.|||||.||..|.|||||.|||||.|
RBAM_008250__ 201 CAAAAAAATCCGCAAGCCGTCTGAACACCGCGTCACGCCGCCATGCCCGG 250
BSNT_01338___ 251 TTTATGAGCAATGCGGCGGCTGCCAGCTTCAGCACCTTGCATACAGCCAG 300
|.|||||.||.|||||||||||.|||||||||||.||.|||||||.||||
RBAM_008250__ 251 TCTATGACCAGTGCGGCGGCTGTCAGCTTCAGCATCTGGCATACACCCAG 300
BSNT_01338___ 301 CAGCTTCGGGAAAAACGCGATATCGTCATTCAGTCTCTTGAACGCCATAC 350
||||||||.|||||||||||.|||||||||||||||||.|||||.|||||
RBAM_008250__ 301 CAGCTTCGCGAAAAACGCGACATCGTCATTCAGTCTCTGGAACGTCATAC 350
BSNT_01338___ 351 GAAGTTTAAAGTTGAAAACATGGAAATCAAAGAAACGATTGGCATGGACA 400
||..||.||.||.|||.|.|||.|.||.|||||.|||||.||.|||||||
RBAM_008250__ 351 GAGATTCAATGTCGAAGAAATGAACATTAAAGATACGATCGGAATGGACA 400
BSNT_01338___ 401 ACCCGTGGAATTACCGCAATAAAAGCCAATTCCAGATCGGACGCTCGCAA 450
||||.|||||||||||.||.||||||||.|||||..||||||||||||||
RBAM_008250__ 401 ACCCTTGGAATTACCGGAACAAAAGCCAGTTCCAAGTCGGACGCTCGCAA 450
BSNT_01338___ 451 AGTGGGAGCATCATCGCCGGCTTATACGGCCTTGATTCTCATGATATCGT 500
||.||.||||||||.||||||||||||||.||||||||.|||.|.|||||
RBAM_008250__ 451 AGCGGCAGCATCATTGCCGGCTTATACGGACTTGATTCCCATAAAATCGT 500
BSNT_01338___ 501 GCCGATTAAAGACTGTATCGTTCAGCATCCGGCAACGAACAAAACAACAG 550
.||||||||.||.||.||.||.|||||||||||.||.|||||||||||.|
RBAM_008250__ 501 TCCGATTAAGGAATGCATTGTCCAGCATCCGGCGACAAACAAAACAACGG 550
BSNT_01338___ 551 GCATCGTCCGCCGCATTTTAGAGGACTTCAATGTGTCTGTTTATAATGAA 600
|.|||||||||||.|||||.||..|...|||.||.||.||||||||.|||
RBAM_008250__ 551 GTATCGTCCGCCGTATTTTGGAAAAACACAACGTATCCGTTTATAACGAA 600
BSNT_01338___ 601 AGAA--AACGAAAAGGCGACGTTCGCACGATCGTGACGAGAGTCGGCTTT 648
.|.| || |||||||||.||.|||||.|||||||||||||||||.|||
RBAM_008250__ 601 CGGACCAA--AAAAGGCGATGTCCGCACCATCGTGACGAGAGTCGGTTTT 648
BSNT_01338___ 649 GAAACAGGCGAAGTGCAGGTCGTGCTTGTAACTGCAAAAGAAACGCTTCC 698
|||||||||||||||||||||||||||||.||.||.|||||.||.||.||
RBAM_008250__ 649 GAAACAGGCGAAGTGCAGGTCGTGCTTGTCACCGCGAAAGAGACACTGCC 698
BSNT_01338___ 699 GCACAAGGAAGAAATCGTCAAAGCGATTCAAAAGCGATTGCCAGAGGTCA 748
|.|.||.||.||.|||||||||||.||||||||.||.|||||.||.||.|
RBAM_008250__ 699 GAATAAAGACGAGATCGTCAAAGCCATTCAAAACCGTTTGCCGGAAGTGA 748
BSNT_01338___ 749 AATCCATTATTCAGAATGTAAACGGGGCGAAAACCTCAGTGATTTTTGGT 798
||||.||||||||.||.||.|||||.|||...||.||.||.|||||.|||
RBAM_008250__ 749 AATCGATTATTCAAAACGTCAACGGCGCGCGCACATCCGTCATTTTCGGT 798
BSNT_01338___ 799 GAGAAAACAAAACAGCTCGCCGGAAAAACAGTG--ATTCAAGAAGTGCTC 846
||.|||||||||..|||.||||| ||.|..|| |||||||||||||||
RBAM_008250__ 799 GACAAAACAAAAGCGCTGGCCGG--AAGCCATGCCATTCAAGAAGTGCTC 846
BSNT_01338___ 847 GGCGACGTATCTTTTGAATTGAGCGCCCGCGCTTTCTTCCAGCTCAATCC 896
||||||||.||.||||||.|||||||||||||.||||||||||||||.||
RBAM_008250__ 847 GGCGACGTGTCATTTGAACTGAGCGCCCGCGCCTTCTTCCAGCTCAACCC 896
BSNT_01338___ 897 GGAACAGACCGTCAAGCTGTATGATGAAGTGAAAAAAGCGGCGCAGCTGA 946
.||.|||||.||||||||||||||.|||||||||.|||||||.|||||||
RBAM_008250__ 897 TGAGCAGACGGTCAAGCTGTATGACGAAGTGAAACAAGCGGCTCAGCTGA 946
BSNT_01338___ 947 CCGGAAAAGAAAAAGTCGTTGATGCGTATTGCGGCGTCGGCACTATCGGC 996
|.|||||||||||||||||.||.|||||||||||||||||.||.||||||
RBAM_008250__ 947 CAGGAAAAGAAAAAGTCGTAGACGCGTATTGCGGCGTCGGTACGATCGGC 996
BSNT_01338___ 997 ATGTGGGTTGCGGACGGAGCGAAGGAAGTCCGCGGCATGGACGTCATCAA 1046
||||||||..|...|||.||.||.||..|||||||||||||||||||.||
RBAM_008250__ 997 ATGTGGGTCTCAAGCGGCGCAAAAGAGATCCGCGGCATGGACGTCATTAA 1046
BSNT_01338___ 1047 GGAATCAATTGACGATGCCAAGAAAAACGCCAAAAAACACGGCATGGCAA 1096
.|||||||||||||||||.||||||||||||||||||||||||||...||
RBAM_008250__ 1047 AGAATCAATTGACGATGCGAAGAAAAACGCCAAAAAACACGGCATCAAAA 1096
BSNT_01338___ 1097 ATGCCACATACGTAACAGGAACAGCCGAGCACTGGCTCCCGAAATGGACG 1146
|.||..||||.||.||||||||||||||.|||||||||||||||||||||
RBAM_008250__ 1097 ACGCGGCATATGTCACAGGAACAGCCGAACACTGGCTCCCGAAATGGACG 1146
BSNT_01338___ 1147 AAAGAAGGCTTCCGCCCGGACGTCGTCATTGTAGACCCGCCAAGAACGGG 1196
|||||||||||||||||.|||||.|||||.||.||||||||.|||||.||
RBAM_008250__ 1147 AAAGAAGGCTTCCGCCCTGACGTGGTCATCGTCGACCCGCCGAGAACCGG 1196
BSNT_01338___ 1197 CTGTGACAGCACGTTCTTGGACACGATCAAAAAAGTCAAACCGAAACGCT 1246
|||||||||.||.||.||.||.||.|||||||||||.|||||||||||||
RBAM_008250__ 1197 CTGTGACAGAACATTTTTAGATACCATCAAAAAAGTAAAACCGAAACGCT 1246
BSNT_01338___ 1247 TTGTCTACGTTTCCTGCAATCCATCCACGCTTGCGAAGGATTTGCAGACG 1296
|.||||||||.|||||||||||.|||||.||.|||||.||.|||||||||
RBAM_008250__ 1247 TCGTCTACGTATCCTGCAATCCTTCCACACTGGCGAAAGACTTGCAGACG 1296
BSNT_01338___ 1297 CTGTCGAAGGACTATCGCGTGGACTATATTCAGCCTGTCGATATGTTTCC 1346
||||||||||||||||||||.||.||||||||||||||.|||||||||||
RBAM_008250__ 1297 CTGTCGAAGGACTATCGCGTCGAATATATTCAGCCTGTTGATATGTTTCC 1346
BSNT_01338___ 1347 GCAGACGGCGCATGTTGAAGCAGTGGCGAGACTTGTATTGAAATCGTCTA 1396
|||.|||||.|||||.|||||.|||||||..||.|||||.||||||||||
RBAM_008250__ 1347 GCAAACGGCTCATGTGGAAGCTGTGGCGAAGCTAGTATTAAAATCGTCTA 1396
BSNT_01338___ 1397 ACTAA 1401
|||||
RBAM_008250__ 1397 ACTAA 1401
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