Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01337 and RBAM_008240

See Amino acid alignment / Visit BSNT_01337 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:02
# Commandline: needle
#    -asequence dna-align/BSNT_01337___yfjP.1.9828.seq
#    -bsequence dna-align/RBAM_008240___yfjP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01337___yfjP-RBAM_008240___yfjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01337___yfjP-RBAM_008240___yfjP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01337___yfjP
# 2: RBAM_008240___yfjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 883
# Identity:     646/883 (73.2%)
# Similarity:   646/883 (73.2%)
# Gaps:          38/883 ( 4.3%)
# Score: 2329.5
# 
#
#=======================================

BSNT_01337___      1 ATGTGGAAGGAAAAAGTATCTGTCACGCCTCCGTATCATTTTGACCGCGT     50
                     |||||||||||||..||.||.|||||.||.||||||||||||||....||
RBAM_008240__      1 ATGTGGAAGGAAACGGTTTCGGTCACACCGCCGTATCATTTTGATAAAGT     50

BSNT_01337___     51 GCTGGACAGGCTGTCTTTAGACCCCCTCAATGCTGTTGATCGAGAGGCAA    100
                     .||.||.||||||||..|.||.||.||.|||||.||.||||...|.||||
RBAM_008240__     51 CCTTGAAAGGCTGTCGCTCGATCCGCTGAATGCGGTCGATCTTCATGCAA    100

BSNT_01337___    101 GGGAAGTCCGTGTGCCAATCAGAAATCAAGCGGGGGACGTATGTATTGTA    150
                     |...|.||...|||||..||||||      |..||||||        |.|
RBAM_008240__    101 GATCAATCAAAGTGCCGCTCAGAA------CACGGGACG--------GCA    136

BSNT_01337___    151 AA--------------GGTACAAGCGTTAGG-ACATGCGGGC-GATCCTG    184
                     ||              |||.||||||..||| ||.|.|  || ||.||.|
RBAM_008240__    137 AACTGTCCGTCATCACGGTTCAAGCGGAAGGCACCTCC--GCAGACCCGG    184

BSNT_01337___    185 AGTTCCTCGTCAGCGGGGAAACGGATCAGGGAGAAATGATGAAGGAA---    231
                     ..||.|||||||||||.|||||||| |.|.|||.|  |||||..|||   
RBAM_008240__    185 TCTTTCTCGTCAGCGGAGAAACGGA-CCGCGAGGA--GATGATTGAACGG    231

BSNT_01337___    232 ATCAAGCGGATTTTTCAATGGGAAAATCATTTGCAGCACGTTCTGGATCA    281
                     |||||.|..||||||||.|||||..|.|...|.||||..||.||.|||||
RBAM_008240__    232 ATCAAACACATTTTTCAGTGGGAGCAGCCGCTTCAGCCTGTGCTTGATCA    281

BSNT_01337___    282 TTTTTCAAAAACGAGCCTGTCCGCTATTTTTGAAGAGCATGCCGGGACGC    331
                     |||.||||||||.|..|||||.|.|.|||||||.||||||||.||.||.|
RBAM_008240__    282 TTTCTCAAAAACAAATCTGTCGGGTCTTTTTGAGGAGCATGCGGGAACCC    331

BSNT_01337___    332 CGCTTGTTCTGGACTACAGCGTGTACAACTGCATGATGAAATGCATTATC    381
                     ||||.||..||||.||...|||.||||||||..|.|||||||||||.|||
RBAM_008240__    332 CGCTCGTCTTGGAGTATGACGTCTACAACTGTCTCATGAAATGCATCATC    381

BSNT_01337___    382 CACCAGCAGCTCAATCTTTCCTTCGCTTACACGCTAACAGAACGGTTTGT    431
                     ||||||||||||||.||.||||||||||..||..||||.||||||||.||
RBAM_008240__    382 CACCAGCAGCTCAACCTGTCCTTCGCTTTTACTTTAACGGAACGGTTCGT    431

BSNT_01337___    432 TCATGCGTTTGGCGAGCAGAAGGATGGCGTGTGGTGCTACCCAAAGCCGG    481
                     .|||||.||.||.||.||.||.||.|||||.||||||||.||..|||||.
RBAM_008240__    432 CCATGCCTTCGGTGAACAAAAAGACGGCGTCTGGTGCTATCCCGAGCCGA    481

BSNT_01337___    482 AAACGATTGCAGAACTCGATTATCAGGATCTGCGTGATCTGCAATTCAGC    531
                     |||||||..|.|..||.||.||||||||..||||.||.||.||.||||||
RBAM_008240__    482 AAACGATCACGGGGCTTGAGTATCAGGACTTGCGGGAGCTCCAGTTCAGC    531

BSNT_01337___    532 ATGAGAAAAGCGGAATACACCATTGATACATCAAGGATGATCGCAGAAGG    581
                     |||||||||||||||||..|.|||||.|..|||.|||||||.||||||||
RBAM_008240__    532 ATGAGAAAAGCGGAATATGCGATTGACATTTCACGGATGATTGCAGAAGG    581

BSNT_01337___    582 CACACTCAGCTTGTCAGAGCTGCCGCATATGGCGGATGAAGACATTATGA    631
                     ..|.||||...||.|.||.||..|.|||.||.||||||||||||||||||
RBAM_008240__    582 AGCGCTCAATCTGGCGGAACTTACCCATTTGTCGGATGAAGACATTATGA    631

BSNT_01337___    632 AGAAACTGATCAAAATTAGGGGTATCGGCCCGTGGACCGTGCAAAATATC    681
                     |.||.|||||||..||.||.||.|||||||||||||||||.|||||..||
RBAM_008240__    632 AAAAGCTGATCACCATCAGAGGCATCGGCCCGTGGACCGTCCAAAACGTC    681

BSNT_01337___    682 CTCATGTTCGGACTTGGCCGTCCCAATTTATTCCCGCTTGCCGATATCGG    731
                     |||||||||||.||.|||||.||.|||.|.||.||..|.||.||.|||||
RBAM_008240__    682 CTCATGTTCGGCCTCGGCCGCCCGAATCTGTTTCCTTTGGCGGACATCGG    731

BSNT_01337___    732 CCTCCAGAATGCCATCAAACGCCATTTTCAGCTGGACGATAAGCCGGCAA    781
                     |||.||.||||||.|||||||||..||....||.||.|||||.|||.|||
RBAM_008240__    732 CCTGCAAAATGCCGTCAAACGCCGCTTCGCCCTTGAGGATAAACCGTCAA    781

BSNT_01337___    782 AGGATGTCATGCTGGCGATGAGCAAGGAGTGGGAGCCTTATTTAAGCTAT    831
                     |.||.||.|||||...|.|.||||..||.||||.|||.||||||||||||
RBAM_008240__    782 AAGACGTGATGCTCCAGGTAAGCAGCGAATGGGCGCCGTATTTAAGCTAT    831

BSNT_01337___    832 GCGTCTTTGTATTTGTGGAGAAGTATAGAATAA    864
                     |||||.||.|||||||||||||||||.||||.|
RBAM_008240__    832 GCGTCCTTATATTTGTGGAGAAGTATTGAATGA    864


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