Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01281 and RBAM_007840

See Amino acid alignment / Visit BSNT_01281 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:58
# Commandline: needle
#    -asequence dna-align/BSNT_01281___yflL.1.9828.seq
#    -bsequence dna-align/RBAM_007840___yflL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01281___yflL-RBAM_007840___yflL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01281___yflL-RBAM_007840___yflL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01281___yflL
# 2: RBAM_007840___yflL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 286
# Identity:     192/286 (67.1%)
# Similarity:   192/286 (67.1%)
# Gaps:          23/286 ( 8.0%)
# Score: 599.5
# 
#
#=======================================

BSNT_01281___      1 ATGCTTCAATACCGAATCATTGTAAACGGCCGGGTTCAAGGTGTGGGCTT     50
                     ||||||||.||.|..||.||||.|.|||||||||||||.||.||.||.||
RBAM_007840__      1 ATGCTTCAGTATCATATGATTGCAGACGGCCGGGTTCAGGGCGTAGGTTT     50

BSNT_01281___     51 TCGCTATTTTGTTCAAATGGAAGCTGATAAGCGAAAACTGGCCGGCTGGG    100
                     ||||||.||.||.||.||||||||.||.|..|..||..|.||||||||||
RBAM_007840__     51 TCGCTACTTCGTCCAGATGGAAGCCGACAGACATAAGGTAGCCGGCTGGG    100

BSNT_01281___    101 TCAAAAACCGTGATGACGGGCGTGTCGAGATTTTGGCAGAGGGTCCGGAA    150
                     |.|||||||||||||||||.||.||.||.||..|.||.||.|||||.|||
RBAM_007840__    101 TAAAAAACCGTGATGACGGCCGGGTGGAAATCCTTGCCGAAGGTCCTGAA    150

BSNT_01281___    151 AACGCCCTGCAATC-GTTTGTTGAGGCTGTAAAGAACGGAAGCCCTTTCT    199
                     .| |.|.|..||.| .||||..||.||.||.|..||.||.|||||.||||
RBAM_007840__    151 GA-GTCGTTAAAACAATTTGCCGAAGCAGTCAGAAAAGGCAGCCCCTTCT    199

BSNT_01281___    200 CAAAGGTTACCGACATCTCTGTGAC------TGAATCCCGCAGCCTTGAA    243
                     ||||.||.||.|.|      ||.||      .|||||.|.|.|.||..||
RBAM_007840__    200 CAAATGTCACAGGC------GTAACCATCGAAGAATCACACCGTCTGAAA    243

BSNT_01281___    244 GG---CCATCATCGATTTTCTATTGTTTACTCATAA    276
                     ||   || .||.|  |||||.||...|||||.|   
RBAM_007840__    244 GGGTACC-GCACC--TTTTCCATCAGTTACTGA---    273


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.