Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01280 and RBAM_007830

See Amino acid alignment / Visit BSNT_01280 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:58
# Commandline: needle
#    -asequence dna-align/BSNT_01280___yflM.1.9828.seq
#    -bsequence dna-align/RBAM_007830___yflM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01280___yflM-RBAM_007830___yflM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01280___yflM-RBAM_007830___yflM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01280___yflM
# 2: RBAM_007830___yflM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1115
# Identity:     829/1115 (74.3%)
# Similarity:   829/1115 (74.3%)
# Gaps:          46/1115 ( 4.1%)
# Score: 3057.5
# 
#
#=======================================

BSNT_01280___      1 TTGGAAGAAAAAGAAATACTCTGGAACGAAGCGAAAGCGTTTATTGCCGC     50
                     |||.||.|.|..||||||||.|||.|.||.|||||.|..|||||||..|.
RBAM_007830__      1 TTGAAACATACGGAAATACTTTGGGATGAGGCGAAGGATTTTATTGATGT     50

BSNT_01280___     51 ATGCTATCAGGAATTGGGAAAGGAGGAGGAAGTGAAAGACCGTCT-----     95
                     .||||||||||||.|.||||.|||...|.||.|.||.|..|||||     
RBAM_007830__     51 CTGCTATCAGGAACTCGGAATGGAATCGCAAATCAACGCGCGTCTGCACG    100

BSNT_01280___     96 CGAGGACATTAAAAG-TGAAATTGACCTGACCGGGAGCTATGTACATACG    144
                     |||      |||||| |||.||.||.|.|||.||.||.||.||.||||||
RBAM_007830__    101 CGA------TAAAAGATGAGATAGATCGGACGGGAAGTTACGTCCATACG    144

BSNT_01280___    145 AAGGAAGAGCTAGAGCACGGAGCGAAAATGGCTTGGAGAAACAGCAACCG    194
                     ..|||||||||.||.|||||.|||||||||||.|||.|.|||||||||||
RBAM_007830__    145 GCGGAAGAGCTTGAACACGGGGCGAAAATGGCGTGGCGCAACAGCAACCG    194

BSNT_01280___    195 CTGCATCGGCAGATTGTTCTGGAATTCGCTGAATGTTATTGACAGACGAG    244
                     |||.|||||..|..||||||||.|.||||||||.||.||||||.|.||  
RBAM_007830__    195 CTGTATCGGGCGTCTGTTCTGGCAATCGCTGAACGTCATTGACCGGCG--    242

BSNT_01280___    245 ACGTCCGG-------ACGAAGGAGGAAGTGCGTGACGCCCTCTTTCACCA    287
                          |||       |||||.||.||.|||||.|||||..|.|||.|.||
RBAM_007830__    243 -----CGGTGTGAACACGAAAGAAGAGGTGCGCGACGCATTATTTGAACA    287

BSNT_01280___    288 TATTGAAACCGCCACCAATAACGGCAAAATCAGACCGACCATTACGATTT    337
                     ||||||||.||||||.||...|||.|||||.|.||||||.||||||||||
RBAM_007830__    288 TATTGAAATCGCCACGAACGGCGGAAAAATTAAACCGACGATTACGATTT    337

BSNT_01280___    338 TCCCTCCGGAAGAGAAGGGTGAAAAGCAAGTCGAGATCTGGAATCATCAG    387
                     |||||||.||..||||.||.||.||||||||.||.|||||||||||.|||
RBAM_007830__    338 TCCCTCCTGAGAAGAATGGGGAGAAGCAAGTGGAAATCTGGAATCACCAG    387

BSNT_01280___    388 CTGATCCGGTACGCTGGATATGAGTCAGACGGAGAAAGAATCGGCGACCC    437
                     ||.|||||.||.||.|||||||||.|.||...||.||||.||||.||.||
RBAM_007830__    388 CTCATCCGCTATGCGGGATATGAGACTGAAAAAGGAAGAGTCGGTGATCC    437

BSNT_01280___    438 GGCTTCCTGTTCCCTGACAGCAGCCTGCGAAGAGCTCGGCTGGCGCGGAG    487
                     |||.||.|.|...|||||.||.|.|||||||.|.||||||||||||||..
RBAM_007830__    438 GGCATCATATGAGCTGACGGCTGTCTGCGAAAAACTCGGCTGGCGCGGGA    487

BSNT_01280___    488 AGCGAACGGATTTTGACCTGCTGCCGCTCATTTTTCGCATGAAAGGCGAC    537
                     ||||.||.||||||||..|.||||||||..||||.||.||||||||.|||
RBAM_007830__    488 AGCGGACCGATTTTGATATTCTGCCGCTGCTTTTCCGGATGAAAGGGGAC    537

BSNT_01280___    538 GAACAGCCTGTCTGGTATGAGCTGCCGCGTTCA----CTTGTGATCGAGG    583
                     |..|||||.|||||||||||.|||||    |||    ||.||||..||.|
RBAM_007830__    538 GGGCAGCCGGTCTGGTATGACCTGCC----TCAGACGCTCGTGAAAGAAG    583

BSNT_01280___    584 TTCCAATCATACATCCGGACATCGAGGCGTTTGCTGATTTGGAGCTGAAG    633
                     |.||.||||..||||||||.||.||.|.||||||.|||||..|.||.|..
RBAM_007830__    584 TGCCGATCACCCATCCGGATATTGAAGAGTTTGCCGATTTAAATCTCAGA    633

BSNT_01280___    634 TGGTACGGCGTGCCTATCATCTCTGATATGAAGCTTGAGGTCGG-GGGCA    682
                     ||||||||.||.||.||.|||.|.|||||||.||||||..|||| ||||.
RBAM_007830__    634 TGGTACGGGGTTCCGATTATCGCCGATATGAGGCTTGAAATCGGCGGGCT    683

BSNT_01280___    683 TTCATTATAATGCCGCGCCATTTAACGGCTGGTATATGGGCACGGAGATC    732
                     .|| .||.||.||.|||||.||||||||.|||||||||||.||.||.|||
RBAM_007830__    684 GTC-GTACAACGCGGCGCCTTTTAACGGATGGTATATGGGAACCGAAATC    732

BSNT_01280___    733 GGAGCGAGAAACCTCGCAGATGAAAAGCGGTACGACAAGCTGAAAAAAGT    782
                     ||.||.||.|||||.||.||.|||||.|||||.||.|.|||.|||||||.
RBAM_007830__    733 GGCGCAAGGAACCTTGCTGACGAAAAACGGTATGATATGCTCAAAAAAGC    782

BSNT_01280___    783 AGCGTCCGTGATCGGCATCGCCG-----CTGATTACAATACGGATTTATG    827
                     .||..|.||.||.||.||..|||     |||     |||||.||..||||
RBAM_007830__    783 CGCTGCAGTCATGGGGATTTCCGCCAGCCTG-----AATACCGACCTATG    827

BSNT_01280___    828 GAAGGATCAAGCGCTAGTTGAATTGAATAAAGCTGTGCTGCACTCGTATA    877
                     |||.|||||.|.|||.||.|||.|||||||.||.|||||..|.||.||.|
RBAM_007830__    828 GAAAGATCAGGTGCTGGTGGAACTGAATAAGGCAGTGCTCTATTCATACA    877

BSNT_01280___    878 AAAAGCAGGGTGTCAGCATCGTTGACCATCATACAGCGGCAAGCCAGTTT    927
                     ||||.||.|||||||||||.||.||.||.|||||.|||||.|..||.|||
RBAM_007830__    878 AAAAACACGGTGTCAGCATTGTCGATCACCATACGGCGGCGAATCAATTT    927

BSNT_01280___    928 AAACGGTTTGAAGAACAGGAGGAAGAAGCGGGCAGAAAGCTGACGGGAGA    977
                     |||||.||||||||||||||..||||.||||||||||||||||||||.||
RBAM_007830__    928 AAACGCTTTGAAGAACAGGAACAAGACGCGGGCAGAAAGCTGACGGGCGA    977

BSNT_01280___    978 CTGGACGTGGCTGATTCCGCCAATTTCACCCGCTGCCACTCATATCTTCC   1027
                     ||||||.||||||||||||||.||.||.||.|||.||||.||.||.||||
RBAM_007830__    978 CTGGACCTGGCTGATTCCGCCGATCTCGCCGGCTTCCACCCACATTTTCC   1027

BSNT_01280___   1028 ACCGCTCCTATGATAACTCAATCGTTAAGCCGAACTATTTTTATCAAGAT   1077
                     |....||.|||||.||..|.||.||.||||||||.||||.||||||.||.
RBAM_007830__   1028 ATAAATCATATGACAATACGATTGTGAAGCCGAATTATTATTATCAGGAC   1077

BSNT_01280___   1078 AAGCCTTATGAGTAA   1092
                     |||||||||.|||||
RBAM_007830__   1078 AAGCCTTATCAGTAA   1092


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