Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01274 and RBAM_007780

See Amino acid alignment / Visit BSNT_01274 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:57
# Commandline: needle
#    -asequence dna-align/BSNT_01274___citS.1.9828.seq
#    -bsequence dna-align/RBAM_007780___citS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01274___citS-RBAM_007780___citS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01274___citS-RBAM_007780___citS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01274___citS
# 2: RBAM_007780___citS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1721
# Identity:    1119/1721 (65.0%)
# Similarity:  1119/1721 (65.0%)
# Gaps:         208/1721 (12.1%)
# Score: 3547.5
# 
#
#=======================================

BSNT_01274___      1 GTGGTGAA---AAAGCGGTTCCATTTTTCCCTGCAAACAAAAATAATGGG     47
                     |||.||.|   |||||||||...|.|.||.|||||||..|||||....||
RBAM_007780__      1 GTGTTGGAAGCAAAGCGGTTTTGTGTCTCTCTGCAAATGAAAATCGCCGG     50

BSNT_01274___     48 GCTGATTGCGGCTCTGCTGGTCTTTGTCATTGGTGTGCTGACCATTACGT     97
                     ..|.|||||||||.|..|..|..|||||||.||...|||.||..|||..|
RBAM_007780__     51 ATTAATTGCGGCTTTATTAATACTTGTCATCGGAACGCTCACAGTTATAT    100

BSNT_01274___     98 TAGCCGTTCAGCATACACAGGGAGAACGGAGACAGGCAGAGCAGCTGGCG    147
                     |.|||.|||||||...|.|||.||..|.||..|||||.||.|||||||||
RBAM_007780__    101 TTGCCTTTCAGCAATTAAAGGAAGGCCAGAAGCAGGCTGAACAGCTGGCG    150

BSNT_01274___    148 GTTCAAACGGCGAGAACCATTTCCTATATGCCGCCGGTTAAAGAGCTCAT    197
                     ||.||||||||.|.|||||||||.||.|||||.||.||.||||       
RBAM_007780__    151 GTGCAAACGGCAAAAACCATTTCATACATGCCTCCTGTAAAAG-------    193

BSNT_01274___    198 TGAGAGAAAAGGCG----GACATGCGGCT-GAGACGC-----------AA    231
                              |||||    |.|.|||||.| .|||.||           .|
RBAM_007780__    194 ---------AGGCGTTCCGGCTTGCGGATCAAGAAGCTTTTACAAAGTTA    234

BSNT_01274___    232 GAGGTCATTGAACAAATGAAAGAACAGACTGGCGCGTTTGCCATTTATGT    281
                     ||.||||||||||||||||||||||||.|.||||||...|||.|.||..|
RBAM_007780__    235 GACGTCATTGAACAAATGAAAGAACAGGCAGGCGCGCACGCCGTCTACAT    284

BSNT_01274___    282 TTTGGACGAAAAAGGAGA----------CATTCGCAGCGCCTCTGGAAAA    321
                     ....||..|||||||..|          ||||||...||          |
RBAM_007780__    285 CACTGATCAAAAAGGGCATGTTGCATTTCATTCGGCCCG----------A    324

BSNT_01274___    322 AGC-GGATT---AAAGAAA--------CTGGAGCGCAGCAGAGAAA----    355
                     ||| |.|||   |||||||        |||.|       |.|.|||    
RBAM_007780__    325 AGCAGTATTCCGAAAGAAAATCAAAATCTGCA-------AAATAAAACCG    367

BSNT_01274___    356 TTTTGTTTGGTGGTTCGCATGTTTCTGAAACAAAAGCGGATGGACGAAGA    405
                     |..||||.||.||.||.|..|||||.||        ||||   |.||||.
RBAM_007780__    368 TCATGTTCGGCGGGTCACCGGTTTCCGA--------CGGA---ATGAAGG    406

BSNT_01274___    406 GTGATCAGAGGAAGCGCGCCGATCAT---------AAAAGAACAGAAGGG    446
                     .|| ||.|.||||||||.|||.|.||         ||||.|.||.||   
RBAM_007780__    407 CTG-TCCGGGGAAGCGCCCCGGTTATTTTGGAGGAAAAAAATCATAA---    452

BSNT_01274___    447 ATACAGCCAAGTGATCGGCAGCGTGTCTGTTGATTTTCTACAAACGGAGA    496
                           |.||||..||||.|..|||.|.||.||.|||.|||||...||||
RBAM_007780__    453 ------CGAAGTCGTCGGAACGGTGACAGTCGAGTTTTTACAAGATGAGA    496

BSNT_01274___    497 CAGAGCAAAG-CATCAAAAAGCATTTGAGAAATTTGAG-------TG--T    536
                     .||| .|||| .||.|||..||||.||.|..|||| ||       ||  |
RBAM_007780__    497 TAGA-AAAAGATATGAAAGCGCATCTGCGGCATTT-AGGCTATTTTGCAT    544

BSNT_01274___    537 GATTGCTG-TGCTTGTACTGCTGC-TCGGATTTATTGGCGCCGCCGTGCT    584
                     |.|||.|| |.|||.|    |.|| ||||      .||.||.||.|.|||
RBAM_007780__    545 GTTTGGTGTTTCTTAT----CGGCATCGG------GGGAGCGGCGGCGCT    584

BSNT_01274___    585 GGCGAAAAGCATCAGAAAGGATACGCTTGGGCTTGAGCCGCATGAGATCG    634
                     .||.|||||||||.|.||.|||||.||.||.|||||.||||||||.||.|
RBAM_007780__    585 CGCAAAAAGCATCCGTAAAGATACACTCGGCCTTGAACCGCATGAAATTG    634

BSNT_01274___    635 CGGCTCTATATCGTGAGAGAAACGCAATGCTTTTCGCGATTCGAGAAGGG    684
                     |.||.||.||..|.|||.|.||.||.|||||..|.|||||...|||||||
RBAM_007780__    635 CAGCGCTGTACAGGGAGCGCAATGCGATGCTCCTTGCGATGAAAGAAGGG    684

BSNT_01274___    685 ATTATTGCC----ACCAATCGTGAAGGCGTCGTCACCATGATGAACGTAT    730
                     |||||.|||    ||.||    |||||||..||.|||||||||||..|||
RBAM_007780__    685 ATTATCGCCGTAAACAAA----GAAGGCGCGGTAACCATGATGAATTTAT    730

BSNT_01274___    731 CGGCGGCCGAGATGCTGAAGCTGCCCGAGCCTGTGATC------CATCTT    774
                     |.|||||.|..||||||||.||.||.||.||..|||||      ||    
RBAM_007780__    731 CTGCGGCTGGTATGCTGAATCTTCCGGAACCGATGATCGGAAGGCA----    776

BSNT_01274___    775 CCTATAGATGACGTCATGCCGGGAGCAGGGCTGATGTCTGTGCTTGAACA    824
                       ||||.|.||..||||||||||.|||...||.|||.|.||..|.|.|..
RBAM_007780__    777 --TATAAAAGAAATCATGCCGGGCGCAAATCTCATGCCGGTTTTGGCAGG    824

BSNT_01274___    825 AGGAGAAATGCTGCCGAACCAGGAGGTAAGCGT--CAACGATCAAGTGTT    872
                     .||||||.|.|.|||||||..||||||  ||||  |...|||.||||.||
RBAM_007780__    825 GGGAGAATTACCGCCGAACGTGGAGGT--GCGTGCCGGAGATAAAGTATT    872

BSNT_01274___    873 TATTATCAATACGAAAGTGATGAATCAAGGCGGGCAGGTGTATGGGATTG    922
                     |||..|.||...|||||..|||||.||...|||.||.||.||.||....|
RBAM_007780__    873 TATCTTAAACGTGAAAGAAATGAAGCAGACCGGACAAGTATACGGAGCGG    922

BSNT_01274___    923 TCGTCAGCTTCAGGGAGAAAACAGAGCTGAAGAAGCTGATCGACACATTG    972
                     |..||||||||.||||||||||||||||.|||||.|||||..|||...||
RBAM_007780__    923 TGATCAGCTTCCGGGAGAAAACAGAGCTCAAGAAACTGATTAACAAGCTG    972

BSNT_01274___    973 ACAGAGGTTCGCAAATATTCAGAGGATCTCAGGGCGCAGACTCATGAATT   1022
                     ||.||..|....|||||.|||||||||||..|||||||.||.||||||||
RBAM_007780__    973 ACTGAAATGAAAAAATACTCAGAGGATCTTCGGGCGCAAACGCATGAATT   1022

BSNT_01274___   1023 TTCAAATAAGCTTTATGCGATTTTAGGGCTGCTTGAGCTTGGGGAGTATG   1072
                     .||.|||||||||||.|||||..|.||.|||.|.|||||.||.||.|||.
RBAM_007780__   1023 CTCGAATAAGCTTTACGCGATCCTCGGTCTGTTAGAGCTGGGCGAATATA   1072

BSNT_01274___   1073 ATGAAGCCATTGATCTGATTAAAGAGGAATATGCGATGCAAAATGAACAG   1122
                     |||||||||||||.|||||.|||||.||.||.||.||.||.|||||||||
RBAM_007780__   1073 ATGAAGCCATTGAACTGATAAAAGAAGAGTACGCCATCCAGAATGAACAG   1122

BSNT_01274___   1123 CATGA-----TCTTTTATTCCATAACATCCATTCGCAGCAGGTGCAGGCC   1167
                     ||.||     |||||     ||.|||||.|||||.||||.|||.||||||
RBAM_007780__   1123 CACGAAATCCTCTTT-----CAAAACATTCATTCACAGCGGGTTCAGGCC   1167

BSNT_01274___   1168 ATTTTGTTAGGGAAAATAAGCAAGGCATCGGAAAAGAAGGTCAAGCTGGT   1217
                     ||..|.|||||.|||||..|.|||||.||.||.|||||.||.|||||...
RBAM_007780__   1168 ATACTATTAGGAAAAATGGGAAAGGCGTCTGAGAAGAAAGTGAAGCTTTC   1217

BSNT_01274___   1218 GATTGATGAGAACAGCT-----CACTCGCGCCTCTTCCTGCGCATATCGG   1262
                     .||.|||||.|||||||     .|.|||     ||.||.|.||||.|.||
RBAM_007780__   1218 AATAGATGAAAACAGCTTTTTAGAATCG-----CTGCCGGAGCATGTGGG   1262

BSNT_01274___   1263 CTTGTCCCATCTTATTACGATTATTGGCAATTTAATTGATAACGCTTTCG   1312
                     .|..|||||.||.||||||||.||.||.|||.|.||||||||||||||||
RBAM_007780__   1263 TTCATCCCAGCTCATTACGATCATCGGAAATCTTATTGATAACGCTTTCG   1312

BSNT_01274___   1313 AAGCTGTAGCGGAGCAAAGCG-TGAAGGAAGTTTTGTTTTTTATCACGGA   1361
                     ||||.||.||.|| .||||.| ..||.||.||....||||||||.||.||
RBAM_007780__   1313 AAGCCGTCGCCGA-AAAAGAGAAAAAAGAGGTCGCCTTTTTTATGACCGA   1361

BSNT_01274___   1362 TATGGGCCATGACATTGTCATTGAAGTATCAGACACAGGGCCCGGTGTGC   1411
                     |||.|||...||.||.|||||.|||||..||||..||||...|||.||||
RBAM_007780__   1362 TATCGGCAGAGATATCGTCATCGAAGTGGCAGATTCAGGAGACGGCGTGC   1411

BSNT_01274___   1412 CGCCAGAGAAAATAGAAGCTGTGTTTGAGAGAGGCTATTCTTCAAAGGGG   1461
                     |.|..||.||||.||||.|..|.|||||.|..|||||.||||||||||||
RBAM_007780__   1412 CTCAGGAAAAAACAGAAACGATATTTGAAAAGGGCTACTCTTCAAAGGGG   1461

BSNT_01274___   1462 ATGAGGAGAGGCTACGGTCTGGCCAATGTGAAAGACTCAGTGCGTGAACT   1511
                     |.|||||||||.|||||..|.||||||.|||||||..|.||..|||||.|
RBAM_007780__   1462 ACGAGGAGAGGATACGGCTTAGCCAATCTGAAAGAAGCCGTCAGTGAATT   1511

BSNT_01274___   1512 GGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCA   1561
                     |...||.|.|||.||..|..||.|.||.||.|..|||||.||.|||||.|
RBAM_007780__   1512 GCAGGGATCGATAGAGATTTCGCAGCAGAAGAGCGGCGGTGCCGTATTTA   1561

BSNT_01274___   1562 CTGTGTTTATACCGAAGGAGAAA---CAAAGGGGGAATCCATTTGATTCA   1608
                     |.||||||||||||||  |||||   |||||||||||||..|.|||    
RBAM_007780__   1562 CGGTGTTTATACCGAA--AGAAACGCCAAAGGGGGAATCGGTGTGA----   1605

BSNT_01274___   1609 CATCGCGATTGCGGAGGATGA   1629
                                          
RBAM_007780__   1605 ---------------------   1605


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