Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01274 and RBAM_007780
See
Amino acid alignment /
Visit
BSNT_01274 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:57
# Commandline: needle
# -asequence dna-align/BSNT_01274___citS.1.9828.seq
# -bsequence dna-align/RBAM_007780___citS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01274___citS-RBAM_007780___citS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01274___citS-RBAM_007780___citS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01274___citS
# 2: RBAM_007780___citS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1721
# Identity: 1119/1721 (65.0%)
# Similarity: 1119/1721 (65.0%)
# Gaps: 208/1721 (12.1%)
# Score: 3547.5
#
#
#=======================================
BSNT_01274___ 1 GTGGTGAA---AAAGCGGTTCCATTTTTCCCTGCAAACAAAAATAATGGG 47
|||.||.| |||||||||...|.|.||.|||||||..|||||....||
RBAM_007780__ 1 GTGTTGGAAGCAAAGCGGTTTTGTGTCTCTCTGCAAATGAAAATCGCCGG 50
BSNT_01274___ 48 GCTGATTGCGGCTCTGCTGGTCTTTGTCATTGGTGTGCTGACCATTACGT 97
..|.|||||||||.|..|..|..|||||||.||...|||.||..|||..|
RBAM_007780__ 51 ATTAATTGCGGCTTTATTAATACTTGTCATCGGAACGCTCACAGTTATAT 100
BSNT_01274___ 98 TAGCCGTTCAGCATACACAGGGAGAACGGAGACAGGCAGAGCAGCTGGCG 147
|.|||.|||||||...|.|||.||..|.||..|||||.||.|||||||||
RBAM_007780__ 101 TTGCCTTTCAGCAATTAAAGGAAGGCCAGAAGCAGGCTGAACAGCTGGCG 150
BSNT_01274___ 148 GTTCAAACGGCGAGAACCATTTCCTATATGCCGCCGGTTAAAGAGCTCAT 197
||.||||||||.|.|||||||||.||.|||||.||.||.||||
RBAM_007780__ 151 GTGCAAACGGCAAAAACCATTTCATACATGCCTCCTGTAAAAG------- 193
BSNT_01274___ 198 TGAGAGAAAAGGCG----GACATGCGGCT-GAGACGC-----------AA 231
||||| |.|.|||||.| .|||.|| .|
RBAM_007780__ 194 ---------AGGCGTTCCGGCTTGCGGATCAAGAAGCTTTTACAAAGTTA 234
BSNT_01274___ 232 GAGGTCATTGAACAAATGAAAGAACAGACTGGCGCGTTTGCCATTTATGT 281
||.||||||||||||||||||||||||.|.||||||...|||.|.||..|
RBAM_007780__ 235 GACGTCATTGAACAAATGAAAGAACAGGCAGGCGCGCACGCCGTCTACAT 284
BSNT_01274___ 282 TTTGGACGAAAAAGGAGA----------CATTCGCAGCGCCTCTGGAAAA 321
....||..|||||||..| ||||||...|| |
RBAM_007780__ 285 CACTGATCAAAAAGGGCATGTTGCATTTCATTCGGCCCG----------A 324
BSNT_01274___ 322 AGC-GGATT---AAAGAAA--------CTGGAGCGCAGCAGAGAAA---- 355
||| |.||| ||||||| |||.| |.|.|||
RBAM_007780__ 325 AGCAGTATTCCGAAAGAAAATCAAAATCTGCA-------AAATAAAACCG 367
BSNT_01274___ 356 TTTTGTTTGGTGGTTCGCATGTTTCTGAAACAAAAGCGGATGGACGAAGA 405
|..||||.||.||.||.|..|||||.|| |||| |.||||.
RBAM_007780__ 368 TCATGTTCGGCGGGTCACCGGTTTCCGA--------CGGA---ATGAAGG 406
BSNT_01274___ 406 GTGATCAGAGGAAGCGCGCCGATCAT---------AAAAGAACAGAAGGG 446
.|| ||.|.||||||||.|||.|.|| ||||.|.||.||
RBAM_007780__ 407 CTG-TCCGGGGAAGCGCCCCGGTTATTTTGGAGGAAAAAAATCATAA--- 452
BSNT_01274___ 447 ATACAGCCAAGTGATCGGCAGCGTGTCTGTTGATTTTCTACAAACGGAGA 496
|.||||..||||.|..|||.|.||.||.|||.|||||...||||
RBAM_007780__ 453 ------CGAAGTCGTCGGAACGGTGACAGTCGAGTTTTTACAAGATGAGA 496
BSNT_01274___ 497 CAGAGCAAAG-CATCAAAAAGCATTTGAGAAATTTGAG-------TG--T 536
.||| .|||| .||.|||..||||.||.|..|||| || || |
RBAM_007780__ 497 TAGA-AAAAGATATGAAAGCGCATCTGCGGCATTT-AGGCTATTTTGCAT 544
BSNT_01274___ 537 GATTGCTG-TGCTTGTACTGCTGC-TCGGATTTATTGGCGCCGCCGTGCT 584
|.|||.|| |.|||.| |.|| |||| .||.||.||.|.|||
RBAM_007780__ 545 GTTTGGTGTTTCTTAT----CGGCATCGG------GGGAGCGGCGGCGCT 584
BSNT_01274___ 585 GGCGAAAAGCATCAGAAAGGATACGCTTGGGCTTGAGCCGCATGAGATCG 634
.||.|||||||||.|.||.|||||.||.||.|||||.||||||||.||.|
RBAM_007780__ 585 CGCAAAAAGCATCCGTAAAGATACACTCGGCCTTGAACCGCATGAAATTG 634
BSNT_01274___ 635 CGGCTCTATATCGTGAGAGAAACGCAATGCTTTTCGCGATTCGAGAAGGG 684
|.||.||.||..|.|||.|.||.||.|||||..|.|||||...|||||||
RBAM_007780__ 635 CAGCGCTGTACAGGGAGCGCAATGCGATGCTCCTTGCGATGAAAGAAGGG 684
BSNT_01274___ 685 ATTATTGCC----ACCAATCGTGAAGGCGTCGTCACCATGATGAACGTAT 730
|||||.||| ||.|| |||||||..||.|||||||||||..|||
RBAM_007780__ 685 ATTATCGCCGTAAACAAA----GAAGGCGCGGTAACCATGATGAATTTAT 730
BSNT_01274___ 731 CGGCGGCCGAGATGCTGAAGCTGCCCGAGCCTGTGATC------CATCTT 774
|.|||||.|..||||||||.||.||.||.||..||||| ||
RBAM_007780__ 731 CTGCGGCTGGTATGCTGAATCTTCCGGAACCGATGATCGGAAGGCA---- 776
BSNT_01274___ 775 CCTATAGATGACGTCATGCCGGGAGCAGGGCTGATGTCTGTGCTTGAACA 824
||||.|.||..||||||||||.|||...||.|||.|.||..|.|.|..
RBAM_007780__ 777 --TATAAAAGAAATCATGCCGGGCGCAAATCTCATGCCGGTTTTGGCAGG 824
BSNT_01274___ 825 AGGAGAAATGCTGCCGAACCAGGAGGTAAGCGT--CAACGATCAAGTGTT 872
.||||||.|.|.|||||||..|||||| |||| |...|||.||||.||
RBAM_007780__ 825 GGGAGAATTACCGCCGAACGTGGAGGT--GCGTGCCGGAGATAAAGTATT 872
BSNT_01274___ 873 TATTATCAATACGAAAGTGATGAATCAAGGCGGGCAGGTGTATGGGATTG 922
|||..|.||...|||||..|||||.||...|||.||.||.||.||....|
RBAM_007780__ 873 TATCTTAAACGTGAAAGAAATGAAGCAGACCGGACAAGTATACGGAGCGG 922
BSNT_01274___ 923 TCGTCAGCTTCAGGGAGAAAACAGAGCTGAAGAAGCTGATCGACACATTG 972
|..||||||||.||||||||||||||||.|||||.|||||..|||...||
RBAM_007780__ 923 TGATCAGCTTCCGGGAGAAAACAGAGCTCAAGAAACTGATTAACAAGCTG 972
BSNT_01274___ 973 ACAGAGGTTCGCAAATATTCAGAGGATCTCAGGGCGCAGACTCATGAATT 1022
||.||..|....|||||.|||||||||||..|||||||.||.||||||||
RBAM_007780__ 973 ACTGAAATGAAAAAATACTCAGAGGATCTTCGGGCGCAAACGCATGAATT 1022
BSNT_01274___ 1023 TTCAAATAAGCTTTATGCGATTTTAGGGCTGCTTGAGCTTGGGGAGTATG 1072
.||.|||||||||||.|||||..|.||.|||.|.|||||.||.||.|||.
RBAM_007780__ 1023 CTCGAATAAGCTTTACGCGATCCTCGGTCTGTTAGAGCTGGGCGAATATA 1072
BSNT_01274___ 1073 ATGAAGCCATTGATCTGATTAAAGAGGAATATGCGATGCAAAATGAACAG 1122
|||||||||||||.|||||.|||||.||.||.||.||.||.|||||||||
RBAM_007780__ 1073 ATGAAGCCATTGAACTGATAAAAGAAGAGTACGCCATCCAGAATGAACAG 1122
BSNT_01274___ 1123 CATGA-----TCTTTTATTCCATAACATCCATTCGCAGCAGGTGCAGGCC 1167
||.|| ||||| ||.|||||.|||||.||||.|||.||||||
RBAM_007780__ 1123 CACGAAATCCTCTTT-----CAAAACATTCATTCACAGCGGGTTCAGGCC 1167
BSNT_01274___ 1168 ATTTTGTTAGGGAAAATAAGCAAGGCATCGGAAAAGAAGGTCAAGCTGGT 1217
||..|.|||||.|||||..|.|||||.||.||.|||||.||.|||||...
RBAM_007780__ 1168 ATACTATTAGGAAAAATGGGAAAGGCGTCTGAGAAGAAAGTGAAGCTTTC 1217
BSNT_01274___ 1218 GATTGATGAGAACAGCT-----CACTCGCGCCTCTTCCTGCGCATATCGG 1262
.||.|||||.||||||| .|.||| ||.||.|.||||.|.||
RBAM_007780__ 1218 AATAGATGAAAACAGCTTTTTAGAATCG-----CTGCCGGAGCATGTGGG 1262
BSNT_01274___ 1263 CTTGTCCCATCTTATTACGATTATTGGCAATTTAATTGATAACGCTTTCG 1312
.|..|||||.||.||||||||.||.||.|||.|.||||||||||||||||
RBAM_007780__ 1263 TTCATCCCAGCTCATTACGATCATCGGAAATCTTATTGATAACGCTTTCG 1312
BSNT_01274___ 1313 AAGCTGTAGCGGAGCAAAGCG-TGAAGGAAGTTTTGTTTTTTATCACGGA 1361
||||.||.||.|| .||||.| ..||.||.||....||||||||.||.||
RBAM_007780__ 1313 AAGCCGTCGCCGA-AAAAGAGAAAAAAGAGGTCGCCTTTTTTATGACCGA 1361
BSNT_01274___ 1362 TATGGGCCATGACATTGTCATTGAAGTATCAGACACAGGGCCCGGTGTGC 1411
|||.|||...||.||.|||||.|||||..||||..||||...|||.||||
RBAM_007780__ 1362 TATCGGCAGAGATATCGTCATCGAAGTGGCAGATTCAGGAGACGGCGTGC 1411
BSNT_01274___ 1412 CGCCAGAGAAAATAGAAGCTGTGTTTGAGAGAGGCTATTCTTCAAAGGGG 1461
|.|..||.||||.||||.|..|.|||||.|..|||||.||||||||||||
RBAM_007780__ 1412 CTCAGGAAAAAACAGAAACGATATTTGAAAAGGGCTACTCTTCAAAGGGG 1461
BSNT_01274___ 1462 ATGAGGAGAGGCTACGGTCTGGCCAATGTGAAAGACTCAGTGCGTGAACT 1511
|.|||||||||.|||||..|.||||||.|||||||..|.||..|||||.|
RBAM_007780__ 1462 ACGAGGAGAGGATACGGCTTAGCCAATCTGAAAGAAGCCGTCAGTGAATT 1511
BSNT_01274___ 1512 GGGCGGCTGGATCGAACTGGCGAATCAAAAAACTGGCGGGGCGGTATTCA 1561
|...||.|.|||.||..|..||.|.||.||.|..|||||.||.|||||.|
RBAM_007780__ 1512 GCAGGGATCGATAGAGATTTCGCAGCAGAAGAGCGGCGGTGCCGTATTTA 1561
BSNT_01274___ 1562 CTGTGTTTATACCGAAGGAGAAA---CAAAGGGGGAATCCATTTGATTCA 1608
|.|||||||||||||| ||||| |||||||||||||..|.|||
RBAM_007780__ 1562 CGGTGTTTATACCGAA--AGAAACGCCAAAGGGGGAATCGGTGTGA---- 1605
BSNT_01274___ 1609 CATCGCGATTGCGGAGGATGA 1629
RBAM_007780__ 1605 --------------------- 1605
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.