Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01260 and RBAM_007650

See Amino acid alignment / Visit BSNT_01260 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:56
# Commandline: needle
#    -asequence dna-align/BSNT_01260___yfmO.1.9828.seq
#    -bsequence dna-align/RBAM_007650___yfmO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01260___yfmO-RBAM_007650___yfmO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01260___yfmO-RBAM_007650___yfmO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01260___yfmO
# 2: RBAM_007650___yfmO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1191
# Identity:    1062/1191 (89.2%)
# Similarity:  1062/1191 (89.2%)
# Gaps:           6/1191 ( 0.5%)
# Score: 4805.5
# 
#
#=======================================

BSNT_01260___      1 ATGGATAAGACAACACAAGTGAATCAGAAAACGGGTTTGCTCAGCCAGCC     50
                     |||||||...||.|||||      ||||||||.||.||..||||||||||
RBAM_007650__      1 ATGGATACATCATCACAA------CAGAAAACAGGCTTATTCAGCCAGCC     44

BSNT_01260___     51 AAAAGCGGTATGGGCTGTCGCGTTTGCCTGTGTGATTTCCTTTATGGGAA    100
                     .|||||.||.|||||.||.||||||||||||||.||||||||||||||||
RBAM_007650__     45 GAAAGCCGTTTGGGCGGTTGCGTTTGCCTGTGTTATTTCCTTTATGGGAA     94

BSNT_01260___    101 TCGGGCTGGTCGATCCAATTCTTCCGGCCATTGCCGCACAACTACATGCT    150
                     ||||.||.||||||||.|||||||||||.||.|||||||||.||||||||
RBAM_007650__     95 TCGGTCTTGTCGATCCGATTCTTCCGGCGATCGCCGCACAATTACATGCT    144

BSNT_01260___    151 TCACCTAGTGAAGTATCACTCTTGTTTACAAGTTATTTGCTTGTAACCGG    200
                     |||||||||||||||||.||.||.|||||||||||||||||.||.|||||
RBAM_007650__    145 TCACCTAGTGAAGTATCTCTGTTATTTACAAGTTATTTGCTCGTTACCGG    194

BSNT_01260___    201 ATTTATGATGTTTTTCTCAGGAGCCATTTCCAGCCGCATCGGCGCGAAAT    250
                     .|||||||||||||||||.||.||.|||||||||||.||||||||.||||
RBAM_007650__    195 TTTTATGATGTTTTTCTCCGGCGCGATTTCCAGCCGGATCGGCGCAAAAT    244

BSNT_01260___    251 GGACATTAATTCTCGGACTTATTTTTATTATTGTGTTTGCGGGGCTTGGC    300
                     ||||..|..|||||||||||||||||||.||.||||||||.|..||.|||
RBAM_007650__    245 GGACGCTGCTTCTCGGACTTATTTTTATCATCGTGTTTGCCGCCCTCGGC    294

BSNT_01260___    301 GGCAGCTCAAGCTCAATCGCTCAGTTAGTCGGCTATCGCGGCGGCTGGGG    350
                     ||.||||||||.||||||||||||.|.|||||||||||||||||||||||
RBAM_007650__    295 GGAAGCTCAAGTTCAATCGCTCAGCTTGTCGGCTATCGCGGCGGCTGGGG    344

BSNT_01260___    351 ATTAGGGAATGCTTTGTTTATTTCAACAGCGCTTGCGGTCATCGTTGGTG    400
                     ..|.|||||||||.|.|||||||||||.||||||||.|||||.||.||.|
RBAM_007650__    345 GCTTGGGAATGCTCTCTTTATTTCAACCGCGCTTGCCGTCATTGTCGGGG    394

BSNT_01260___    401 TATCAGTCGGAGGAAGCGCCCAAGCGATTATTTTGTATGAGGCTGCGCTC    450
                     ||||.|||||.||.||||||.||||.||||||.|||||||||||||.|||
RBAM_007650__    395 TATCTGTCGGCGGCAGCGCCAAAGCCATTATTCTGTATGAGGCTGCACTC    444

BSNT_01260___    451 GGTCTCGGGATTTCCGTCGGGCCGCTTGCAGGCGGAGAGCTTGGAAGCAT    500
                     ||..|.|||||||||||||||||||||||.|||||.||||||||.|||||
RBAM_007650__    445 GGCTTGGGGATTTCCGTCGGGCCGCTTGCCGGCGGTGAGCTTGGCAGCAT    494

BSNT_01260___    501 TTCATGGCGCGCACCGTTTTTCGGAGTATCTGTCCTGATGTTTATTACGT    550
                     ||||||||||||.|||||.|||||||||||||||||.|||||.||..||.
RBAM_007650__    495 TTCATGGCGCGCTCCGTTCTTCGGAGTATCTGTCCTCATGTTCATAGCGC    544

BSNT_01260___    551 TAATCGCGATTTCTTTCATGCTTCCGAAATTGCCGAAACCGGCGAAACGC    600
                     |...|||||||||..|||||||.|||||..||||||||||||||||||||
RBAM_007650__    545 TTTGCGCGATTTCACTCATGCTGCCGAAGCTGCCGAAACCGGCGAAACGC    594

BSNT_01260___    601 GTCGGTGTGTTTGATGCGATGAAGGCGCTAAAATATAAAGGCCTTTTAAC    650
                     |||||||||||||||||||||||||||||.|||||||||||||||||.||
RBAM_007650__    595 GTCGGTGTGTTTGATGCGATGAAGGCGCTCAAATATAAAGGCCTTTTGAC    644

BSNT_01260___    651 AATGGCGGTATCGGCATTCTTATACAACTTTGGATTTTTTATTTTGCTTG    700
                     ||||||.|||||.|||||||||||||||||||||||||||||||||||||
RBAM_007650__    645 AATGGCAGTATCTGCATTCTTATACAACTTTGGATTTTTTATTTTGCTTG    694

BSNT_01260___    701 CTTATTCTCCGTTCGTTCTGGATTTAGATGAACACGGTCTTGGATATGTC    750
                     ||||||||||||||||.||||||||||||||||||||.||||||||||||
RBAM_007650__    695 CTTATTCTCCGTTCGTGCTGGATTTAGATGAACACGGCCTTGGATATGTC    744

BSNT_01260___    751 TTCTTCGGCTGGGGCCTTCTGCTGGCGATTACGTCAGTCTTTACGGCGCC    800
                     ||||||||||||||..|..|||||||.|||||||||||||||||||||||
RBAM_007650__    745 TTCTTCGGCTGGGGTTTATTGCTGGCAATTACGTCAGTCTTTACGGCGCC    794

BSNT_01260___    801 GCTCGTGCACAAAGCGCTGGGCACAGTGCGTTCGCTCGTCGTTCTCTTTA    850
                     |||||||||||||||||||||.||||||.|||||||||||||||||||||
RBAM_007650__    795 GCTCGTGCACAAAGCGCTGGGAACAGTGGGTTCGCTCGTCGTTCTCTTTA    844

BSNT_01260___    851 TCGCCTTTGCGGCTATTCTCGTTATTATGGGGATCTGGACAGACCATCAG    900
                     ||||||||||||..||||||.|..|.||||||||.|||||.|||||||||
RBAM_007650__    845 TCGCCTTTGCGGTCATTCTCATCGTCATGGGGATATGGACTGACCATCAG    894

BSNT_01260___    901 ACTTTGATTATTACATGTATCGTTGTCGCTGGTGCTGTTCTCGGTATGGT    950
                     ||.|||||.|||||.||||||||||||||.||||||||||||||||||||
RBAM_007650__    895 ACGTTGATCATTACGTGTATCGTTGTCGCCGGTGCTGTTCTCGGTATGGT    944

BSNT_01260___    951 GAATACGATCATGACAACCGCTGTGATGGGTTCTGCGCCGGTTGAACGTT   1000
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_007650__    945 GAATACGATCATGACAACCGCTGTGATGGGTTCTGCGCCGGTTGAACGTT    994

BSNT_01260___   1001 CAATCGCGTCTTCAGCCTACAGCTCAGTCCGCTTCATCGGCGGCGCGCTC   1050
                     |||||||||||||||||||||||||||||||.||.||||||||.||||||
RBAM_007650__    995 CAATCGCGTCTTCAGCCTACAGCTCAGTCCGTTTTATCGGCGGTGCGCTC   1044

BSNT_01260___   1051 GCTCCGTGGATTGCAGGAATGCTGTCAGAACACTTTACTGCAAGCACACC   1100
                     ||||||||||||||.||||||||||||||||||||.||.||||||||.||
RBAM_007650__   1045 GCTCCGTGGATTGCGGGAATGCTGTCAGAACACTTCACCGCAAGCACTCC   1094

BSNT_01260___   1101 ATATACAGTAGGCGGAATCGTCGTTTTTGTCGGCATGCTTGTCCTTCTCA   1150
                     |||||||||||||||.||||||||||||||||||||||||||||||||||
RBAM_007650__   1095 ATATACAGTAGGCGGGATCGTCGTTTTTGTCGGCATGCTTGTCCTTCTCA   1144

BSNT_01260___   1151 TGGGACGTAAACATCTTGCTGGAATTAAGGCGGGGCATTAA   1191
                     |||||||.||||||||.||.|||||.||.||.||.||||||
RBAM_007650__   1145 TGGGACGCAAACATCTCGCCGGAATAAAAGCCGGACATTAA   1185


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