Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01246 and RBAM_007550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_01246___yfnE.1.9828.seq
# -bsequence dna-align/RBAM_007550___yfnE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01246___yfnE-RBAM_007550___yfnE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01246___yfnE-RBAM_007550___yfnE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01246___yfnE
# 2: RBAM_007550___yfnE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1218
# Identity: 869/1218 (71.3%)
# Similarity: 869/1218 (71.3%)
# Gaps: 96/1218 ( 7.9%)
# Score: 3045.5
#
#
#=======================================
BSNT_01246___ 1 GTGAAAGCAAGCGTTATTATTCCTGCATATAATTCGAAGGAGCGTCTTTA 50
|||||.||||||||.|||.||||.|||||||||||.||||||||.|||||
RBAM_007550__ 1 GTGAAGGCAAGCGTCATTGTTCCCGCATATAATTCCAAGGAGCGGCTTTA 50
BSNT_01246___ 51 CAACAGCCTTCTGTCATTAAACCAGCAGGAGTGCGATGA-AGA---ATTT 96
.||||||||.|||||..|.||..|.|||||.||| | ||| .||.
RBAM_007550__ 51 TAACAGCCTGCTGTCCCTGAATGAACAGGAATGC----ACAGAGCCGTTC 96
BSNT_01246___ 97 GAAGTCATTGTAGCGGACAATGGCTCTGAGGACGGGACGCTCTCGATGCT 146
|||||.|||||.||.|||||.||.||.||.|||||.||..|.||.|||||
RBAM_007550__ 97 GAAGTGATTGTGGCTGACAACGGTTCGGAAGACGGAACCTTATCCATGCT 146
BSNT_01246___ 147 TGAGTCATTTCA-AGCTGATTTTCCGCTGATCTTTACACGGATTAAAGAA 195
|||.||| |||| .||..|||||||||||||.|||....|.|||||||||
RBAM_007550__ 147 TGAATCA-TTCAGCGCGAATTTTCCGCTGATTTTTGTGAGAATTAAAGAA 195
BSNT_01246___ 196 AACAGGGGCATTGCGTACGGACGAAATCAGGCGCTTCGCAATGCCAGAGG 245
|||||.||.||.||.|||||.||.|||||||||.|.||||||||||||||
RBAM_007550__ 196 AACAGAGGGATCGCTTACGGCCGGAATCAGGCGGTCCGCAATGCCAGAGG 245
BSNT_01246___ 246 AGACATCCTGATTTTCCATGACAGCGATATGCTTGCGGCAAAGGACCTTG 295
.||.||..||||.|||||||||||||||||||||||.|.||||||..|.|
RBAM_007550__ 246 CGATATTTTGATCTTCCATGACAGCGATATGCTTGCCGAAAAGGATTTGG 295
BSNT_01246___ 296 TGGCAAAACATATTAAAGCCCATGAGAACGAAGAGAATCTCGTCGTGTGC 345
||||.||.|||||.||.||.|||||||||...||..||||.|||||.|||
RBAM_007550__ 296 TGGCGAAGCATATCAAGGCTCATGAGAACCGGGACGATCTTGTCGTATGC 345
BSNT_01246___ 346 GGGTTGTTTTGGAAACGGATCTACAGTTTTTACTATGAACGATTTGAAGA 395
||..||||.|||||.|||||.|||||.|||||.|||||.||.||||||.|
RBAM_007550__ 346 GGTATGTTCTGGAAGCGGATTTACAGCTTTTATTATGACCGTTTTGAAAA 395
BSNT_01246___ 396 AGAACATAAGGAACAGCTCGCAAAGCTCACAGGT-----GAAATGCCG-- 438
|||.|||||||||.|.|||||..|.|| || ||..|||||
RBAM_007550__ 396 AGAGCATAAGGAAAAACTCGCCGAACT-----GTATGAAGAGCTGCCGGG 440
BSNT_01246___ 439 -AAGAAAGA--CAAACAAAAGCTGCTGGAGGAAGCGGACATCAAAAACGG 485
.|.||||| | |||.||..|.|||...||.||||.|.||||
RBAM_007550__ 441 CGATAAAGAGCC--------GCTCCTTCATGAAAGTGATATCAGAGACGG 482
BSNT_01246___ 486 AAGCTTTCTTGATAAAAGCTTTGACCTCGATACCGACTTTATAGACGTGC 535
|||.||||||||..||.|||||||..|.||||||||||||||....||||
RBAM_007550__ 483 AAGTTTTCTTGACCAATGCTTTGATTTAGATACCGACTTTATCCGTGTGC 532
BSNT_01246___ 536 TCAAGAAG-ATTTTAGATGAGTACGGCGATGACTTGAAAGGCTATCATAT 584
|.|| ||| |||||.||..|.|||||.|||||.|||||.|||||.|.|.|
RBAM_007550__ 533 TGAA-AAGCATTTTGGAAAAATACGGAGATGATTTGAACGGCTACCGTCT 581
BSNT_01246___ 585 GCCATGGCGCTTTTTTATCACGAATAATTCCTCTGTGAAACGCAAGCATG 634
|||.|||||.|||||.||.|||||.|||||.||.||.||..|..||||.|
RBAM_007550__ 582 GCCGTGGCGTTTTTTCATTACGAACAATTCGTCAGTCAAGAGACAGCACG 631
BSNT_01246___ 635 TGGTTGACCTCGGTTTATTTGACGAAGGCATTGTGCGGTACGGGTTTGAG 684
|||..||.|||||..|.|||||.|||||||||||..|.|||||.|||||.
RBAM_007550__ 632 TGGCAGATCTCGGCCTGTTTGATGAAGGCATTGTCAGATACGGCTTTGAA 681
BSNT_01246___ 685 GATTATGACCTCGGGATCAGGCTTCATCAGGCCGGATTGA-CCTTCAGGC 733
||||||||.|||||.|||||||||||||||.|.|||.||| ..|||| ||
RBAM_007550__ 682 GATTATGATCTCGGCATCAGGCTTCATCAGTCGGGAATGAGATTTCA-GC 730
BSNT_01246___ 734 TTCGCCGTGATATTGTCAGTGTTCATCAGGAACATCCAAGCAATTGTAAG 783
|.||.||.|||||..|.||.||.||||||||.|||||.|||||.||....
RBAM_007550__ 731 TGCGGCGCGATATCATGAGCGTACATCAGGAGCATCCGAGCAACTGCGCT 780
BSNT_01246___ 784 TCTGTAGACGATATTCGGGCAAACATTGCCTATATGTGCGATAAATACAA 833
||.||.||.|||||..||||.||.||.||.||.||||||||.||.|||||
RBAM_007550__ 781 TCCGTTGATGATATCAGGGCGAATATCGCGTACATGTGCGACAAGTACAA 830
BSNT_01246___ 834 TAACATCCGCTC-CTTAGACGTTCATCTCGCTTTTAATGGGCCGTT---C 879
|.||||.|..|| ||| |||||.||.|||||.|||||.||.||||| |
RBAM_007550__ 831 TGACATTCATTCGCTT-GACGTGCACCTCGCGTTTAACGGCCCGTTTGAC 879
BSNT_01246___ 880 CCGCCTGACATGACGAACAGAATCATGGCTGATATTCAAAAGCTGCTGGA 929
.|| ||..|.||.|||||.||.|||||.||.||..||..||||||.||
RBAM_007550__ 880 GCG---GAGTTAACCAACAGCATGATGGCAGACATCGAAGTGCTGCTTGA 926
BSNT_01246___ 930 ATCACAGAAATATGATATGCTGCTGAATCTGTTTCTTGAGCTTCTGCATG 979
.|...||||||||||.|..||||||.|..|.|||||.|||||.|||||.|
RBAM_007550__ 927 TTATGAGAAATATGAAAGCCTGCTGCACATTTTTCTCGAGCTGCTGCACG 976
BSNT_01246___ 980 TTGTTAAAGAGCGCAACATTGATCCGGATTGGCGAAAGAAATCCCCAAGG 1029
..||||||||.||||||.|.||.|||||.|||...|.||||..|||..||
RBAM_007550__ 977 CGGTTAAAGACCGCAACCTCGACCCGGACTGGAAGACGAAAAGCCCGCGG 1026
BSNT_01246___ 1030 GTGACGGCGAAAAGCTTTGATTTGCAAACT-------GTCCGCAAGCTTC 1072
.|.||||||||.||||| |||.|| |||.|.||||||.
RBAM_007550__ 1027 ATCACGGCGAACAGCTT-------CAATCTGCCGGAGGTCGGAAAGCTTT 1069
BSNT_01246___ 1073 TGCCTAAGGCGAAGAAAAAGCTAGGCGTGAACG-ATTTTGC--------- 1112
||.|.||.|||.|.||||||||.||||| .||| |.|||||
RBAM_007550__ 1070 TGGCAAAAGCGGAAAAAAAGCTGGGCGT-CACGCACTTTGCAAGGGCGTT 1118
BSNT_01246___ 1113 CAACGCACTGTATGC-GCTTGTCAACGATTTGCTGCACGTGGATCTTAGA 1161
|||.||.||| || ||| |||||.|||||.||||||||||.|
RBAM_007550__ 1119 CAAAGCGCTG---GCTGCT-------GATTTACTGCATGTGGATCTTAAA 1158
BSNT_01246___ 1162 TCATTGGATGTGGTATAA 1179
|.|
RBAM_007550__ 1159 TAA--------------- 1161
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