Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01241 and RBAM_007510
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_01241___yfnI.1.9828.seq
# -bsequence dna-align/RBAM_007510___yfnI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01241___yfnI-RBAM_007510___yfnI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01241___yfnI-RBAM_007510___yfnI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01241___yfnI
# 2: RBAM_007510___yfnI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1979
# Identity: 1534/1979 (77.5%)
# Similarity: 1534/1979 (77.5%)
# Gaps: 67/1979 ( 3.4%)
# Score: 5995.5
#
#
#=======================================
BSNT_01241___ 1 ATGAATGAAGAACTTAAAGTGTTTAAGAAAGTAGAGGTTGCCATGAAGAA 50
||||||||
RBAM_007510__ 1 ------------------------------------------ATGAAGAA 8
BSNT_01241___ 51 ACTTTTTTCTTACAAACTTAGCTTTTTTGTGCTGGCTGTTATACTGTTTT 100
|.|.||||||||||.||||||.||||||||.||||||.||||..||||||
RBAM_007510__ 9 ATTATTTTCTTACAGACTTAGTTTTTTTGTACTGGCTATTATTTTGTTTT 58
BSNT_01241___ 101 GGGCAAAAACGTATTTATCCTA-CAAGACTGAGTTTAATCTTGGGGTAAA 149
||||.||||||||||||.|||| ||.| ||||.||.||.||||||||.||
RBAM_007510__ 59 GGGCCAAAACGTATTTAGCCTATCATG-CTGAATTCAACCTTGGGGTGAA 107
BSNT_01241___ 150 AGGCACAACTCAGGAGATCCTCCTGATATTTAACCCATTCTCAAGCGCCG 199
.||..|.||.|||.||.|.||.||..|..|.||.||.||||||||||||.
RBAM_007510__ 108 GGGTCCGACGCAGCAGTTTCTGCTTGTGATCAATCCGTTCTCAAGCGCCA 157
BSNT_01241___ 200 TCTTCTTTTTAGGACTGGCTTTGCTGGCGAAAGGGCGTAAATCAGCCATT 249
|.|||||||||||||||||.|||.|.||||||||.||.||||||||.|||
RBAM_007510__ 158 TTTTCTTTTTAGGACTGGCATTGTTTGCGAAAGGCCGCAAATCAGCGATT 207
BSNT_01241___ 250 ATTATGCTGATTATCGATTTCTTGATGACATTTGTGTTATATGCAAATAT 299
||.|||.|||||||.||||||.|.|||||.|||.|.||.|||||||||||
RBAM_007510__ 208 ATCATGGTGATTATTGATTTCATCATGACGTTTATTTTGTATGCAAATAT 257
BSNT_01241___ 300 TTTATTCTATCGTTTCTTTGACGATTTCTTGACGTTCCCGAACATTAAA- 348
..||||||||||.|||||.||.|||||||||||.||||||||| |||||
RBAM_007510__ 258 CCTATTCTATCGATTCTTCGATGATTTCTTGACATTCCCGAAC-TTAAAG 306
BSNT_01241___ 349 CAGTCCGGAAACGTTGGAAACATGGGAGACGGGATTTTCAGTATCATGGC 398
||.|||||.||.||.|||||.|||||||||||.||.|||||.||.|||.|
RBAM_007510__ 307 CAATCCGGTAATGTGGGAAATATGGGAGACGGCATCTTCAGCATTATGTC 356
BSNT_01241___ 399 CGGTCATGATATTTTCTA-TTTCTTAGATATTATCATTTTGATTGCGGTA 447
|||.|||||||||||.|| |||.|| ||||||||.|||||.||.|||.|.
RBAM_007510__ 357 CGGCCATGATATTTTATACTTTGTT-GATATTATTATTTTAATCGCGCTT 405
BSNT_01241___ 448 TTGATCTGGAGACCTGAATTAAAAGAATACAAAATGAAAAAACGCTTTGC 497
.||.|.|||||||.|||..|.||.||||.|||..||||||||||.|.|.|
RBAM_007510__ 406 CTGGTGTGGAGACGTGAGCTGAAGGAATTCAAGCTGAAAAAACGGTATAC 455
BSNT_01241___ 498 GTCTTTAGTGATCCTTTCTGGGATCGCACTGTTTTTCATCAACCTGCACT 547
|||.|||.|.|||.|..|.||.||.|...||||.|||.|.|||||| .|.
RBAM_007510__ 456 GTCATTAATTATCGTGACGGGTATTGTTTTGTTCTTCGTGAACCTG-GCG 504
BSNT_01241___ 548 A-TGCGGAAAAAGACCGTCCGCAGCTGCTGACAAGAACGTTTGACCGCAA 596
| |||.|||.|.|||||.|||.||||||||||||||||||||||||||||
RBAM_007510__ 505 ATTGCCGAAGAGGACCGCCCGGAGCTGCTGACAAGAACGTTTGACCGCAA 554
BSNT_01241___ 597 TTATATCGTGAAGTATTTAGGTCTGTACAACTACACCATTTATGACGGTG 646
|||.||.||.||.||.|||||.||.||.||.|||||.|||||||||||.|
RBAM_007510__ 555 TTACATTGTAAAATACTTAGGCCTTTATAATTACACGATTTATGACGGCG 604
BSNT_01241___ 647 TGCAGACGGCTCAAACAGAAACGCAACGGGCCTATGCAAGCAGCGATGAT 696
|.||||||||.||.||.|||.|.||.|||||.|||||.|||||||||||.
RBAM_007510__ 605 TACAGACGGCGCAGACGGAATCACAGCGGGCATATGCCAGCAGCGATGAC 654
BSNT_01241___ 697 TTAACAAGCGTCGAGAATTACACGACGTCTCATTATGCGAAACCAAACGC 746
.|.||.|||||.||.||.|||||..||||.|||||||||||.||.|||||
RBAM_007510__ 655 CTGACGAGCGTTGAAAACTACACATCGTCGCATTATGCGAAGCCGAACGC 704
BSNT_01241___ 747 CGAGTACTTCGGCTCTGCCAAAGGCAAAAATATCATTAAAATTCACCTCG 796
||||||.||||||...||||||||||||||.||.|||||.||||||.|.|
RBAM_007510__ 705 CGAGTATTTCGGCAAGGCCAAAGGCAAAAACATTATTAAGATTCACTTGG 754
BSNT_01241___ 797 AAAGCTTCCAGTCATTCCTGATTGACTACAAGCTAAACGGTGAAGAGGTG 846
||||.|||||.||.||..||||..|||||||.||..||||..||||.||.
RBAM_007510__ 755 AAAGTTTCCAATCGTTTTTGATCAACTACAAACTTGACGGAAAAGAAGTC 804
BSNT_01241___ 847 ACGCCTTTCTTAAATAAACTTGCGCACGGCGGGGAAGATGTGACGTATTT 896
|||||.|||.|.||||||||.||.|.||||||.||.||..|||||||.||
RBAM_007510__ 805 ACGCCGTTCCTGAATAAACTCGCCCGCGGCGGAGAGGACATGACGTACTT 854
BSNT_01241___ 897 TGATAACTTCTTCCATCAGACAGGCCAGGGAAAAACATCTGATGCCGAGC 946
|||||||||.|||||.||.||.|||||.||.|||||||||||.|||||||
RBAM_007510__ 855 TGATAACTTTTTCCACCAAACGGGCCAAGGTAAAACATCTGACGCCGAGC 904
BSNT_01241___ 947 TGACAATGGATAACTCGATCTTCGGTCTTCCTGAAGGCTCCGCGTTTGTG 996
|||..|||||||||....|.|||||.||.||||||||.||.||.||.|||
RBAM_007510__ 905 TGATGATGGATAACAGCCTGTTCGGACTGCCTGAAGGGTCAGCCTTCGTG 954
BSNT_01241___ 997 ACGAAAGGCGAAAACACTTACCAATCGCTTCCTGCGATTTTAGACCAGAA 1046
||.|||||.||||||||.||.||||||||||||||.||..|.||||| ||
RBAM_007510__ 955 ACAAAAGGGGAAAACACGTATCAATCGCTTCCTGCCATCCTTGACCA-AA 1003
BSNT_01241___ 1047 G-GAAGGCTATACAAGCGCCGTCCTGCATGGTGATTACAAATCGTTCTGG 1095
| ||.|||||||||||||||||..|.||.|||||.||||||||.||||||
RBAM_007510__ 1004 GTGAGGGCTATACAAGCGCCGTTTTACACGGTGACTACAAATCATTCTGG 1053
BSNT_01241___ 1096 AACCGTGACCAGATTTACAAACATATCGGATACGACAAGTTCTTTGACGC 1145
|||||||||||||||||||||||||||||.|||||.||.|||||||||||
RBAM_007510__ 1054 AACCGTGACCAGATTTACAAACATATCGGCTACGATAAATTCTTTGACGC 1103
BSNT_01241___ 1146 AAGTACGTACGATATGTCGGATGAAAATGTGATTAACATGGGGCTTAAGG 1195
.||.||.|||||||||||.|||||.||..|..|.||.|||||.||.||||
RBAM_007510__ 1104 CAGCACATACGATATGTCTGATGACAACCTTGTCAATATGGGACTGAAGG 1153
BSNT_01241___ 1196 ATAAGCCGTTCTTTACAGAATCGATTTCAAAGCTTGAATCTCTTAAACAG 1245
||||.||.|||||.|.||||||.|||.|.||||||.||||.||.||||||
RBAM_007510__ 1154 ATAAACCATTCTTCAAAGAATCCATTCCGAAGCTTCAATCGCTGAAACAG 1203
BSNT_01241___ 1246 CCGTTTTATGCGCATTTGATTACATTGACAAACCATTATCCGTTTAACCT 1295
|||||.||.|||||||||.|.||..||||.||||||||||||||||..||
RBAM_007510__ 1204 CCGTTCTACGCGCATTTGCTCACGCTGACGAACCATTATCCGTTTACGCT 1253
BSNT_01241___ 1296 TGATGAAAAAGACGCGTCTCTTAAAAAAGCGACAACAGGCGATAACACAG 1345
|||||||||||||||..|..|..|||||||||.|||.|||||....||.|
RBAM_007510__ 1254 TGATGAAAAAGACGCAACGATCGAAAAAGCGAAAACGGGCGACGCGACTG 1303
BSNT_01241___ 1346 TTGACAGCTACTTCCAGACAGCGCGTTACCTTGACGAAGCGCTTGAGCAA 1395
|.||...|||.||||||||.||||||||.||.||||||||||||||.||.
RBAM_007510__ 1304 TGGATGACTATTTCCAGACGGCGCGTTATCTCGACGAAGCGCTTGAACAG 1353
BSNT_01241___ 1396 TTCTTCAAGGAGCTGAAGGAAGCCGGCCTGTATGACAACTCAGTCATCAT 1445
|||||.||.||.||||||..|.||||..|.|||||||||||.||.||.||
RBAM_007510__ 1354 TTCTTTAAAGATCTGAAGTCATCCGGTTTATATGACAACTCGGTGATTAT 1403
BSNT_01241___ 1446 GATTTACGGTGACCATAACGGTATTTCTGAAAACCATAACCGAGCGATGA 1495
|.|||||||.||||||.||||.||.|||||||||||||||||.|||||||
RBAM_007510__ 1404 GCTTTACGGAGACCATTACGGAATCTCTGAAAACCATAACCGCGCGATGA 1453
BSNT_01241___ 1496 AAGAGATTCTTGGAAAAGAGATCACAGATTATCAAAACGCACAGAACCAG 1545
||||.|||||.||.|||||.||.||...||||||||||||.|||||.|||
RBAM_007510__ 1454 AAGAAATTCTCGGCAAAGAAATTACGCCTTATCAAAACGCGCAGAATCAG 1503
BSNT_01241___ 1546 CGTGTGCCGCTGATGATCCGCGTTCCTGGCAAAAAAGGCGGAGTGAACCA 1595
|||||||||||.|||.|.|||.|.||.||||||||||||||.||||||||
RBAM_007510__ 1504 CGTGTGCCGCTTATGCTTCGCATCCCCGGCAAAAAAGGCGGGGTGAACCA 1553
BSNT_01241___ 1596 TACGTATGGCGGCGAAATTGACGTTATGCCGACACTTCTGCACTTAGAAG 1645
||||||.|||||.|||||.||||||.|||||||..|.||.|||||.||||
RBAM_007510__ 1554 TACGTACGGCGGTGAAATGGACGTTGTGCCGACGATCCTTCACTTGGAAG 1603
BSNT_01241___ 1646 GAATTGATTCTCAGAAATACATCAACTTTGGTACTGATTTATTCTCTAAA 1695
|.||.||||||.|||||||.||.||.||.||.||.|||.|.|||||.|||
RBAM_007510__ 1604 GCATCGATTCTAAGAAATATATTAATTTCGGCACCGATCTCTTCTCGAAA 1653
BSNT_01241___ 1696 GACCACGACGATACAGTGGCATTCAGAAACGGAGACTTCGTAACGCCGAA 1745
|||||.||.|||||.|||.|.|||.|.||||||||.|.|||.||||||||
RBAM_007510__ 1654 GACCATGATGATACGGTGACGTTCCGTAACGGAGATTACGTCACGCCGAA 1703
BSNT_01241___ 1746 GTACACATCAGTCGACAATATCATTTACGATACGAAGACAGGTGAAAAAC 1795
.||.||.||..||..||||.||.|.|||||||||||||||||..||.|||
RBAM_007510__ 1704 ATATACTTCCATCTCCAATGTCGTATACGATACGAAGACAGGAAAAGAAC 1753
BSNT_01241___ 1796 TGAAAGCGAATGAAGAAACGAAGAATCTGAAAACAAGAGTGAACCAGCAG 1845
||||||..|||.|.||||||||.||.||||||.|.|||||.|...|||||
RBAM_007510__ 1754 TGAAAGGCAATCAGGAAACGAAAAACCTGAAAGCCAGAGTCACAGAGCAG 1803
BSNT_01241___ 1846 CTGAGCCTTTCAGACAGTGTCCTGTACAAAGACTTGCTGAGGTTCCATAA 1895
||||..||.||.|||||.||..||||||||||||||||.||.|||||.||
RBAM_007510__ 1804 CTGAAGCTGTCTGACAGCGTGATGTACAAAGACTTGCTCAGATTCCACAA 1853
BSNT_01241___ 1896 ACTAAATGA-TTTCAAAGCC-GTTGATCCGTCAGACTATCATTACGGCAA 1943
|.|.|..|| ||| |.||| |||||||||||..|.||||||||||||||
RBAM_007510__ 1854 ATTGAGCGACTTT--ACGCCGGTTGATCCGTCTAAATATCATTACGGCAA 1901
BSNT_01241___ 1944 GGAAAAAG--AAATCA----AATAA---- 1962
.| ||||| .||||| |||||
RBAM_007510__ 1902 AG-AAAAGCTGAATCAGGATAATAAATAA 1929
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