Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01172 and RBAM_007250

See Amino acid alignment / Visit BSNT_01172 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:52
# Commandline: needle
#    -asequence dna-align/BSNT_01172.1.9828.seq
#    -bsequence dna-align/RBAM_007250___cotJB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01172-RBAM_007250___cotJB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01172-RBAM_007250___cotJB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01172
# 2: RBAM_007250___cotJB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 276
# Identity:     199/276 (72.1%)
# Similarity:   199/276 (72.1%)
# Gaps:          24/276 ( 8.7%)
# Score: 676.0
# 
#
#=======================================

BSNT_01172         1 ATGGCAAAAAAGGTTGACGCCGAATATTATCGTCAGCTAGAGCAAATACA     50
                     |||||.||||||.||||.|..|||||||||||.|.|||.||||||||.||
RBAM_007250__      1 ATGGCGAAAAAGATTGATGATGAATATTATCGGCTGCTGGAGCAAATTCA     50

BSNT_01172        51 GGCTGCTGATTTTGTGCTT-GTTGAGCTGAGTCTTTATTTAAATACACAT     99
                     |||.||.||.||||| ||| ||.|||||||..||||||.|..||||.|||
RBAM_007250__     51 GGCGGCGGACTTTGT-CTTGGTGGAGCTGACGCTTTATCTGGATACGCAT     99

BSNT_01172       100 CCTCATGA-----TGAGGATGCGCTGAATCAATTCAATCAATATTCCGGC    144
                     ||.|||||     |     .|||||..|.||.||..||.||||||||.|.
RBAM_007250__    100 CCCCATGACCGTCT-----CGCGCTTCAGCAGTTTCATGAATATTCCCGG    144

BSNT_01172       145 TATTCAAGGCA-CTTAAAAAGACAGTTCGAATCCT-CTTACGGACCGCTT    192
                     ||.|||||.|| ||||.|||| |.|||.||| ||| ..||||||||||||
RBAM_007250__    145 TACTCAAGACAGCTTAGAAAG-CGGTTTGAA-CCTGAGTACGGACCGCTT    192

BSNT_01172       193 CTGCAGTTCGGC----AACAGCCCCGCGGGCAAGGATTGGGATTGGGGAA    238
                     |||||.||||||    ..|||..|.|||..|||    |||||.|||||..
RBAM_007250__    193 CTGCAATTCGGCGTGAGTCAGGTCGGCGCTCAA----TGGGACTGGGGCC    238

BSNT_01172       239 AAGGGCCATGGCCGTGGCAAGTATAA    264
                     ..||.||.|||||.||||||||||||
RBAM_007250__    239 GCGGTCCTTGGCCATGGCAAGTATAA    264


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