Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01171 and RBAM_007240

See Amino acid alignment / Visit BSNT_01171 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:52
# Commandline: needle
#    -asequence dna-align/BSNT_01171___cotJA.1.9828.seq
#    -bsequence dna-align/RBAM_007240___cotJA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01171___cotJA-RBAM_007240___cotJA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01171___cotJA-RBAM_007240___cotJA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01171___cotJA
# 2: RBAM_007240___cotJA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 249
# Identity:     203/249 (81.5%)
# Similarity:   203/249 (81.5%)
# Gaps:           0/249 ( 0.0%)
# Score: 831.0
# 
#
#=======================================

BSNT_01171___      1 ATGAAGGATATGCAGCCGTTTTCGCCTGTCAAATCATATACGCCCTTTCA     50
                     |||||.||.|..|||||||||.|.||.||||||||.||||..|||||.||
RBAM_007240__      1 ATGAAAGAAAATCAGCCGTTTACACCGGTCAAATCCTATAAACCCTTCCA     50

BSNT_01171___     51 CAGCCGTTTTGATCCCTGTCCGCCCATAGGGAAGAAATATTACAGAACGC    100
                     ||||||.|||||||||||.|||||.||.||||..|||||.|.||||||||
RBAM_007240__     51 CAGCCGGTTTGATCCCTGCCCGCCGATCGGGAGAAAATACTTCAGAACGC    100

BSNT_01171___    101 CCCCTAACCTTTATATGACCTTTCAGCCTGAGCACATGGAGCAGTTTTCG    150
                     |.||..|.|||||||||...||||||||..|.|||.|||||||||||||.
RBAM_007240__    101 CGCCGCATCTTTATATGCGGTTTCAGCCGTATCACTTGGAGCAGTTTTCT    150

BSNT_01171___    151 CCGATGGAGGCTTTGAGGAAAGGCACCCTTTGGAAGGATCTCTATGATTT    200
                     |||||||||||.|||||.|||||.|||||||||||||||||.||.|||||
RBAM_007240__    151 CCGATGGAGGCATTGAGAAAAGGGACCCTTTGGAAGGATCTTTACGATTT    200

BSNT_01171___    201 TTATGAAAACCCTTATCGAGGGGGAGACGCACATGGCAAAAAAGGTTGA    249
                     .|||||.||.||||||||.||||||..||.|.|||||.||||||.||||
RBAM_007240__    201 CTATGATAATCCTTATCGGGGGGGAATCGAATATGGCGAAAAAGATTGA    249


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